[package - 141releng-armv7-default][biology/coverm] Failed for coverm-0.7.0_2 in build
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Date: Wed, 01 Jan 2025 02:15:28 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere3/data/141releng-armv7-default/5dc9e6d0c83c/logs/coverm-0.7.0_2.log
Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=141releng-armv7-default&build=5dc9e6d0c83c
Log:
=>> Building biology/coverm
build started at Wed Jan 1 02:07:34 UTC 2025
port directory: /usr/ports/biology/coverm
package name: coverm-0.7.0_2
building for: FreeBSD 141releng-armv7-default-job-12 14.1-RELEASE-p6 FreeBSD 14.1-RELEASE-p6 1401000 arm
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 5806 Dec 24 01:06 /usr/ports/biology/coverm/Makefile
Ports top last git commit: 5dc9e6d0c83
Ports top unclean checkout: no
Port dir last git commit: 39ac58d19ab
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500028
Jail OSVERSION: 1401000
Job Id: 12
---Begin Environment---
SHELL=/bin/sh
OSVERSION=1401000
UNAME_v=FreeBSD 14.1-RELEASE-p6 1401000
UNAME_r=14.1-RELEASE-p6
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.2
MASTERMNT=/usr/local/poudriere/data/.m/141releng-armv7-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/141releng-armv7-default/12/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=141releng-armv7-default
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/141releng-armv7-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.2
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/coverm/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/coverm/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/coverm/work/.cache HOME=/wrkdirs/usr/ports/biology/coverm/work TMPDIR="/wrkdirs/usr/ports/biology/coverm/work" PATH=/wrkdirs/usr/ports/biology/coverm/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/coverm/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/coverm/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/coverm/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/coverm/work/.cache HOME=/wrkdirs/usr/ports/biology/coverm/work TMPDIR="/wrkdirs/usr/ports/biology/coverm/work" PATH=/wrkdirs/usr/ports/biology/coverm/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/coverm/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTA
LL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
OSREL=14.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/coverm" EXAMPLESDIR="share/examples/coverm" DATADIR="share/coverm" WWWDIR="www/coverm" ETCDIR="etc/coverm"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/coverm DOCSDIR=/usr/local/share/doc/coverm EXAMPLESDIR=/usr/local/share/examples/coverm WWWDIR=/usr/local/www/coverm ETCDIR=/usr/local/etc/coverm
--End SUB_LIST--
---Begin make.conf---
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License AGPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> coverm-0.7.0_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[141releng-armv7-default-job-12] Installing pkg-1.21.3...
[141releng-armv7-default-job-12] Extracting pkg-1.21.3: .......... done
===> coverm-0.7.0_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of coverm-0.7.0_2
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License AGPLv3 accepted by the user
===> Fetching all distfiles required by coverm-0.7.0_2 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License AGPLv3 accepted by the user
===> Fetching all distfiles required by coverm-0.7.0_2 for building
=> SHA256 Checksum OK for rust/crates/addr2line-0.24.2.crate.
=> SHA256 Checksum OK for rust/crates/adler2-2.0.0.crate.
=> SHA256 Checksum OK for rust/crates/aho-corasick-1.1.3.crate.
=> SHA256 Checksum OK for rust/crates/ansi_term-0.12.1.crate.
=> SHA256 Checksum OK for rust/crates/anstream-0.6.15.crate.
=> SHA256 Checksum OK for rust/crates/anstyle-1.0.8.crate.
=> SHA256 Checksum OK for rust/crates/anstyle-parse-0.2.5.crate.
=> SHA256 Checksum OK for rust/crates/anstyle-query-1.1.1.crate.
=> SHA256 Checksum OK for rust/crates/anstyle-wincon-3.0.4.crate.
=> SHA256 Checksum OK for rust/crates/anyhow-1.0.89.crate.
=> SHA256 Checksum OK for rust/crates/approx-0.5.1.crate.
=> SHA256 Checksum OK for rust/crates/assert_cli-0.6.3.crate.
=> SHA256 Checksum OK for rust/crates/atty-0.2.14.crate.
=> SHA256 Checksum OK for rust/crates/autocfg-1.4.0.crate.
=> SHA256 Checksum OK for rust/crates/backtrace-0.3.74.crate.
=> SHA256 Checksum OK for rust/crates/bincode-1.3.3.crate.
=> SHA256 Checksum OK for rust/crates/bio-1.6.0.crate.
=> SHA256 Checksum OK for rust/crates/bio-types-1.0.4.crate.
=> SHA256 Checksum OK for rust/crates/bird_tool_utils-0.5.1.crate.
=> SHA256 Checksum OK for rust/crates/bird_tool_utils-man-0.4.0.crate.
=> SHA256 Checksum OK for rust/crates/bit-set-0.5.3.crate.
=> SHA256 Checksum OK for rust/crates/bit-vec-0.5.1.crate.
=> SHA256 Checksum OK for rust/crates/bit-vec-0.6.3.crate.
=> SHA256 Checksum OK for rust/crates/bitflags-1.3.2.crate.
=> SHA256 Checksum OK for rust/crates/bitflags-2.6.0.crate.
=> SHA256 Checksum OK for rust/crates/buf_redux-0.8.4.crate.
=> SHA256 Checksum OK for rust/crates/buffer-redux-1.0.2.crate.
=> SHA256 Checksum OK for rust/crates/bv-0.11.1.crate.
=> SHA256 Checksum OK for rust/crates/bytecount-0.6.8.crate.
=> SHA256 Checksum OK for rust/crates/bytemuck-1.18.0.crate.
=> SHA256 Checksum OK for rust/crates/byteorder-1.5.0.crate.
=> SHA256 Checksum OK for rust/crates/bzip2-0.4.4.crate.
=> SHA256 Checksum OK for rust/crates/bzip2-sys-0.1.11+1.0.8.crate.
=> SHA256 Checksum OK for rust/crates/capnp-0.14.11.crate.
=> SHA256 Checksum OK for rust/crates/cargo-husky-1.5.0.crate.
=> SHA256 Checksum OK for rust/crates/cc-1.1.24.crate.
=> SHA256 Checksum OK for rust/crates/cfg-if-1.0.0.crate.
=> SHA256 Checksum OK for rust/crates/checkm-0.2.0.crate.
=> SHA256 Checksum OK for rust/crates/clap-3.2.25.crate.
=> SHA256 Checksum OK for rust/crates/clap-4.5.19.crate.
=> SHA256 Checksum OK for rust/crates/clap_builder-4.5.19.crate.
<snip>
= note: expected raw pointer `*mut u8`
found mutable reference `&mut i8`
note: function defined here
--> /wrkdirs/usr/ports/biology/coverm/work/target/release/build/hts-sys-c3c4c7ccd37e0633/out/bindings.rs:9439:12
|
9439 | pub fn bam_mods_query_type(
| ^^^^^^^^^^^^^^^^^^^
error[E0308]: mismatched types
--> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/rust-htslib-0.44.1/src/bam/mod.rs:179:21
|
177 | i64::from(htslib::cram_seek(
| ----------------- arguments to this function are incorrect
178 | htsfile.fp.cram,
179 | offset as libc::off_t,
| ^^^^^^^^^^^^^^^^^^^^^ expected `i32`, found `i64`
|
note: function defined here
--> /wrkdirs/usr/ports/biology/coverm/work/target/release/build/hts-sys-c3c4c7ccd37e0633/out/bindings.rs:9704:12
|
9704 | pub fn cram_seek(
| ^^^^^^^^^
help: you can convert an `i64` to an `i32` and panic if the converted value doesn't fit
|
179 | (offset as libc::off_t).try_into().unwrap(),
| + +++++++++++++++++++++
error[E0308]: mismatched types
--> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/rust-htslib-0.44.1/src/bam/mod.rs:1128:29
|
1128 | (*rec).l_text = l_text as u64;
| ------------- ^^^^^^^^^^^^^ expected `u32`, found `u64`
| |
| expected due to the type of this binding
error[E0308]: mismatched types
--> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/rust-htslib-0.44.1/src/bam/mod.rs:1393:45
|
1393 | let rec = htslib::sam_hdr_parse((l_text + 1) as u64, text as *const c_char);
| --------------------- ^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64`
| |
| arguments to this function are incorrect
|
note: function defined here
--> /wrkdirs/usr/ports/biology/coverm/work/target/release/build/hts-sys-c3c4c7ccd37e0633/out/bindings.rs:8520:12
|
8520 | pub fn sam_hdr_parse(l_text: size_t, text: *const ::std::os::raw::c_char) -> *mut sam_hdr_t;
| ^^^^^^^^^^^^^
help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit
|
1393 | let rec = htslib::sam_hdr_parse(((l_text + 1) as u64).try_into().unwrap(), text as *const c_char);
| + +++++++++++++++++++++
error[E0308]: mismatched types
--> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/rust-htslib-0.44.1/src/bam/mod.rs:1395:29
|
1395 | (*rec).l_text = l_text as u64;
| ------------- ^^^^^^^^^^^^^ expected `u32`, found `u64`
| |
| expected due to the type of this binding
error[E0308]: mismatched types
--> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/rust-htslib-0.44.1/src/bcf/record.rs:1011:48
|
1011 | let rm_set = unsafe { htslib::kbs_init(remove.len() as u64) };
| ---------------- ^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64`
| |
| arguments to this function are incorrect
|
note: function defined here
--> /wrkdirs/usr/ports/biology/coverm/work/target/release/build/hts-sys-c3c4c7ccd37e0633/out/bindings.rs:11642:12
|
11642 | pub fn kbs_init(ni: size_t) -> *mut kbitset_t;
| ^^^^^^^^
help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit
|
1011 | let rm_set = unsafe { htslib::kbs_init((remove.len() as u64).try_into().unwrap()) };
| + +++++++++++++++++++++
error[E0308]: mismatched types
--> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/rust-htslib-0.44.1/src/bgzf/mod.rs:118:17
|
115 | htslib::bgzf_read(
| ----------------- arguments to this function are incorrect
...
118 | buf.len() as u64,
| ^^^^^^^^^^^^^^^^ expected `u32`, found `u64`
|
note: function defined here
--> /wrkdirs/usr/ports/biology/coverm/work/target/release/build/hts-sys-c3c4c7ccd37e0633/out/bindings.rs:10097:12
|
10097 | pub fn bgzf_read(fp: *mut BGZF, data: *mut ::std::os::raw::c_void, length: size_t) -> ssize_t;
| ^^^^^^^^^
help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit
|
118 | (buf.len() as u64).try_into().unwrap(),
| + +++++++++++++++++++++
error[E0308]: mismatched types
--> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/rust-htslib-0.44.1/src/bgzf/mod.rs:264:17
|
261 | htslib::bgzf_write(
| ------------------ arguments to this function are incorrect
...
264 | buf.len() as u64,
| ^^^^^^^^^^^^^^^^ expected `u32`, found `u64`
|
note: function defined here
--> /wrkdirs/usr/ports/biology/coverm/work/target/release/build/hts-sys-c3c4c7ccd37e0633/out/bindings.rs:10100:12
|
10100 | pub fn bgzf_write(
| ^^^^^^^^^^
help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit
|
264 | (buf.len() as u64).try_into().unwrap(),
| + +++++++++++++++++++++
warning: `roff` (lib) generated 1 warning (1 duplicate)
Compiling version-compare v0.1.1
Running `CARGO=/usr/local/bin/cargo CARGO_CRATE_NAME=version_compare CARGO_MANIFEST_DIR=/wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/version-compare-0.1.1 CARGO_MANIFEST_PATH=/wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/version-compare-0.1.1/Cargo.toml CARGO_PKG_AUTHORS='Tim Visee <3a4fb3964f@sinenomine.email>' CARGO_PKG_DESCRIPTION='Rust library to easily compare version numbers with no specific format, and test against various comparison operators.' CARGO_PKG_HOMEPAGE='https://timvisee.com/projects/version-compare/' CARGO_PKG_LICENSE=MIT CARGO_PKG_LICENSE_FILE='' CARGO_PKG_NAME=version-compare CARGO_PKG_README=README.md CARGO_PKG_REPOSITORY='https://gitlab.com/timvisee/version-compare' CARGO_PKG_RUST_VERSION='' CARGO_PKG_VERSION=0.1.1 CARGO_PKG_VERSION_MAJOR=0 CARGO_PKG_VERSION_MINOR=1 CARGO_PKG_VERSION_PATCH=1 CARGO_PKG_VERSION_PRE='' LD_LIBRARY_PATH=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps /usr/local/bin/rust
c --crate-name version_compare --edition=2018 /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/version-compare-0.1.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C panic=abort -C linker-plugin-lto -C codegen-units=1 --check-cfg 'cfg(docsrs)' --check-cfg 'cfg(feature, values())' -C metadata=792c74126f35a680 -C extra-filename=-792c74126f35a680 --out-dir /wrkdirs/usr/ports/biology/coverm/work/target/release/deps -C strip=symbols -L dependency=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps --cap-lints warn -C target-cpu= -C link-arg=-fstack-protector-strong`
warning: unexpected `cfg` condition name: `tarpaulin`
--> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/version-compare-0.1.1/src/cmp.rs:320:12
|
320 | #[cfg_attr(tarpaulin, skip)]
| ^^^^^^^^^
|
= help: expected names are: `clippy`, `debug_assertions`, `doc`, `docsrs`, `doctest`, `feature`, `fmt_debug`, `miri`, `overflow_checks`, `panic`, `proc_macro`, `relocation_model`, `rustfmt`, `sanitize`, `sanitizer_cfi_generalize_pointers`, `sanitizer_cfi_normalize_integers`, `target_abi`, `target_arch`, `target_endian`, `target_env`, `target_family`, `target_feature`, `target_has_atomic`, `target_has_atomic_equal_alignment`, `target_has_atomic_load_store`, `target_os`, `target_pointer_width`, `target_thread_local`, `target_vendor`, `test`, `ub_checks`, `unix`, and `windows`
= help: consider using a Cargo feature instead
= help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint:
[lints.rust]
unexpected_cfgs = { level = "warn", check-cfg = ['cfg(tarpaulin)'] }
= help: or consider adding `println!("cargo::rustc-check-cfg=cfg(tarpaulin)");` to the top of the `build.rs`
= note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
= note: `#[warn(unexpected_cfgs)]` on by default
warning: unexpected `cfg` condition name: `tarpaulin`
--> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/version-compare-0.1.1/src/compare.rs:66:12
|
66 | #[cfg_attr(tarpaulin, skip)]
| ^^^^^^^^^
|
= help: consider using a Cargo feature instead
= help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint:
[lints.rust]
unexpected_cfgs = { level = "warn", check-cfg = ['cfg(tarpaulin)'] }
= help: or consider adding `println!("cargo::rustc-check-cfg=cfg(tarpaulin)");` to the top of the `build.rs`
= note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
warning: unexpected `cfg` condition name: `tarpaulin`
--> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/version-compare-0.1.1/src/manifest.rs:58:12
|
58 | #[cfg_attr(tarpaulin, skip)]
| ^^^^^^^^^
|
= help: consider using a Cargo feature instead
= help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint:
[lints.rust]
unexpected_cfgs = { level = "warn", check-cfg = ['cfg(tarpaulin)'] }
= help: or consider adding `println!("cargo::rustc-check-cfg=cfg(tarpaulin)");` to the top of the `build.rs`
= note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
warning: unexpected `cfg` condition name: `tarpaulin`
--> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/version-compare-0.1.1/src/part.rs:34:12
|
34 | #[cfg_attr(tarpaulin, skip)]
| ^^^^^^^^^
|
= help: consider using a Cargo feature instead
= help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint:
[lints.rust]
unexpected_cfgs = { level = "warn", check-cfg = ['cfg(tarpaulin)'] }
= help: or consider adding `println!("cargo::rustc-check-cfg=cfg(tarpaulin)");` to the top of the `build.rs`
= note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
warning: unexpected `cfg` condition name: `tarpaulin`
--> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/version-compare-0.1.1/src/version.rs:462:12
|
462 | #[cfg_attr(tarpaulin, skip)]
| ^^^^^^^^^
|
= help: consider using a Cargo feature instead
= help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint:
[lints.rust]
unexpected_cfgs = { level = "warn", check-cfg = ['cfg(tarpaulin)'] }
= help: or consider adding `println!("cargo::rustc-check-cfg=cfg(tarpaulin)");` to the top of the `build.rs`
= note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
For more information about this error, try `rustc --explain E0308`.
warning: `rust-htslib` (lib) generated 1 warning (1 duplicate)
error: could not compile `rust-htslib` (lib) due to 10 previous errors; 1 warning emitted
Caused by:
process didn't exit successfully: `CARGO=/usr/local/bin/cargo CARGO_CRATE_NAME=rust_htslib CARGO_MANIFEST_DIR=/wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/rust-htslib-0.44.1 CARGO_MANIFEST_PATH=/wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/rust-htslib-0.44.1/Cargo.toml CARGO_PKG_AUTHORS='Christopher Schröder <christopher.schroeder@tu-dortmund.de>:Johannes Köster <johannes.koester@tu-dortmund.de>' CARGO_PKG_DESCRIPTION='This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.' CARGO_PKG_HOMEPAGE='' CARGO_PKG_LICENSE=MIT CARGO_PKG_LICENSE_FILE='' CARGO_PKG_NAME=rust-htslib CARGO_PKG_README=README.md CARGO_PKG_REPOSITORY='https://github.com/rust-bio/rust-htslib.git' CARGO_PKG_RUST_VERSION='' CARGO_PKG_VERSION=0.44.1 CARGO_PKG_VERSION_MAJOR=0 CARGO_PKG_VERSION_MINOR=44 CARGO_PKG_VERSION_PATCH=1 CARGO_PKG_VERSION_PRE='' LD_LIBRARY_PATH=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps /u
sr/local/bin/rustc --crate-name rust_htslib --edition=2018 /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/rust-htslib-0.44.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C panic=abort -C linker-plugin-lto -C codegen-units=1 --check-cfg 'cfg(docsrs)' --check-cfg 'cfg(feature, values("bindgen", "bzip2", "curl", "default", "gcs", "libdeflate", "lzma", "s3", "serde", "serde_bytes", "serde_feature", "static"))' -C metadata=4f051a6230481ada -C extra-filename=-4f051a6230481ada --out-dir /wrkdirs/usr/ports/biology/coverm/work/target/release/deps -C strip=symbols -L dependency=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps --extern bio_types=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps/libbio_types-91c51ac43a6251ee.rmeta --extern byteorder=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps/libbyteorder-dffaf63bde304cbc.rmeta --
extern custom_derive=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps/libcustom_derive-7483bb2affc966c7.rmeta --extern derive_new=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps/libderive_new-fc98a8aeb89995c6.so --extern hts_sys=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps/libhts_sys-42c8a8b28fc75707.rmeta --extern ieee754=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps/libieee754-4d2bff9be3298f89.rmeta --extern lazy_static=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps/liblazy_static-5dc051c9ad114269.rmeta --extern libc=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps/liblibc-30a588b0b0b53017.rmeta --extern linear_map=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps/liblinear_map-5b15060627a20503.rmeta --extern newtype_derive=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps/libnewtype_derive-ada766d388787f5b.rmeta --extern regex=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps/
libregex-63f53b471a5f67fa.rmeta --extern thiserror=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps/libthiserror-ff044f47e89505df.rmeta --extern url=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps/liburl-9b1c47af21a048cb.rmeta --cap-lints warn -C target-cpu= -C link-arg=-fstack-protector-strong -L native=/wrkdirs/usr/ports/biology/coverm/work/target/release/build/hts-sys-c3c4c7ccd37e0633/out -L native=/wrkdirs/usr/ports/biology/coverm/work/target/release/build/libz-sys-02fc58be1fd98f4f/out/lib -L native=/wrkdirs/usr/ports/biology/coverm/work/target/release/build/libz-sys-02fc58be1fd98f4f/out/lib64` (exit status: 1)
warning: build failed, waiting for other jobs to finish...
warning: `version-compare` (lib) generated 6 warnings (1 duplicate)
warning: `galah` (lib) generated 1 warning (1 duplicate)
*** Error code 101
Stop.
make: stopped in /usr/ports/biology/coverm