[package - 134arm64-quarterly][science/mdynamix] Failed for mdynamix-5.3.0 in build
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Date: Wed, 26 Feb 2025 11:44:42 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere1/data/134arm64-quarterly/2cbed7722168/logs/mdynamix-5.3.0.log
Build URL: https://pkg-status.freebsd.org/ampere1/build.html?mastername=134arm64-quarterly&build=2cbed7722168
Log:
=>> Building science/mdynamix
build started at Wed Feb 26 11:44:13 UTC 2025
port directory: /usr/ports/science/mdynamix
package name: mdynamix-5.3.0
building for: FreeBSD 134arm64-quarterly-job-08 13.4-RELEASE-p4 FreeBSD 13.4-RELEASE-p4 arm64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 991 Jan 12 01:02 /usr/ports/science/mdynamix/Makefile
Ports top last git commit: 2cbed7722
Ports top unclean checkout: no
Port dir last git commit: 93a86df99
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500028
Jail OSVERSION: 1304000
Job Id: 08
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---Begin OPTIONS List---
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--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" MAKE=/usr/local/bin/gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/mdynamix/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/mdynamix/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/mdynamix/work/.cache HOME=/wrkdirs/usr/ports/science/mdynamix/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/mdynamix/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/mdynamix/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" XDG_DATA_HOME=/wrkdirs/usr/ports/science/mdynamix/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/mdynamix/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/mdynamix/work/.cache HOME=/wrkdirs/usr/ports/science/mdynamix/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/mdynamix/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/mdynamix/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/loc
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--PLIST_SUB--
OSREL=13.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/mdynamix" EXAMPLESDIR="share/examples/mdynamix" DATADIR="share/mdynamix" WWWDIR="www/mdynamix" ETCDIR="etc/mdynamix"
--End PLIST_SUB--
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PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/mdynamix DOCSDIR=/usr/local/share/doc/mdynamix EXAMPLESDIR=/usr/local/share/examples/mdynamix WWWDIR=/usr/local/www/mdynamix ETCDIR=/usr/local/etc/mdynamix
--End SUB_LIST--
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BATCH=yes
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PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
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#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
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cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 1048576
stack size (kbytes, -s) 1048576
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2+ accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> mdynamix-5.3.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[134arm64-quarterly-job-08] Installing pkg-1.21.3...
[134arm64-quarterly-job-08] Extracting pkg-1.21.3: .......... done
===> mdynamix-5.3.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of mdynamix-5.3.0
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2+ accepted by the user
===> Fetching all distfiles required by mdynamix-5.3.0 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2+ accepted by the user
===> Fetching all distfiles required by mdynamix-5.3.0 for building
=> SHA256 Checksum OK for md530.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2+ accepted by the user
===> Fetching all distfiles required by mdynamix-5.3.0 for building
===> Extracting for mdynamix-5.3.0
=> SHA256 Checksum OK for md530.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for mdynamix-5.3.0
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> mdynamix-5.3.0 depends on executable: gfortran13 - not found
===> Installing existing package /packages/All/gcc13-13.3.0.pkg
[134arm64-quarterly-job-08] Installing gcc13-13.3.0...
[134arm64-quarterly-job-08] `-- Installing binutils-2.43.1,1...
[134arm64-quarterly-job-08] | `-- Installing indexinfo-0.3.1...
[134arm64-quarterly-job-08] | `-- Extracting indexinfo-0.3.1: .... done
[134arm64-quarterly-job-08] | `-- Installing zstd-1.5.6...
[134arm64-quarterly-job-08] | | `-- Installing liblz4-1.10.0,1...
[134arm64-quarterly-job-08] | | `-- Extracting liblz4-1.10.0,1: .......... done
[134arm64-quarterly-job-08] | `-- Extracting zstd-1.5.6: .......... done
[134arm64-quarterly-job-08] `-- Extracting binutils-2.43.1,1: .......... done
[134arm64-quarterly-job-08] `-- Installing gmp-6.3.0...
[134arm64-quarterly-job-08] `-- Extracting gmp-6.3.0: .......... done
[134arm64-quarterly-job-08] `-- Installing mpc-1.3.1_1...
[134arm64-quarterly-job-08] | `-- Installing mpfr-4.2.1,1...
[134arm64-quarterly-job-08] | `-- Extracting mpfr-4.2.1,1: .......... done
[134arm64-quarterly-job-08] `-- Extracting mpc-1.3.1_1: ......... done
[134arm64-quarterly-job-08] Extracting gcc13-13.3.0: .......... done
=====
Message from gcc13-13.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc13
<snip>
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/REAL(8)).
pimd.f:531:30:
531 | call MPI_ALLREDUCE(BUFF,BUF2,IBUF,MPI_REAL,
| 1
......
1117 | call MPI_ALLREDUCE(BUFF,BUF2,IBUF,MPI_DOUBLE_PRECISION,
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/REAL(8)).
gfortran -O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -ffast-math -c -o restart.o restart.f
gfortran -O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -ffast-math -c -o scalar.o scalar.f
gfortran -O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -ffast-math -c -o service.o service.f
mpif77 -O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -ffast-math -c -o service.o service.f
mpif77 -O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -ffast-math -c -o setup.o setup.f
setup.f:978:72:
978 | DO 100 J = 1,NRY
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1)
setup.f:979:72:
979 | DO 100 K = 1,NRZ
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1)
gfortran -O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -ffast-math -c -o setup.o setup.f
setup.f:978:72:
978 | DO 100 J = 1,NRY
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1)
setup.f:979:72:
979 | DO 100 K = 1,NRZ
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1)
mpif77 -O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -ffast-math -c -o util.o util.f
util.f:168:72:
168 | DO 20 J=1,N
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1)
util.f:169:72:
169 | 20 A(I,J)=A(I,J)/SCL
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
util.f:171:72:
171 | DO 30 J=1,N
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1)
util.f:177:72:
177 | DO 100 J=1,IU1
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1)
util.f:178:72:
178 | 100 TES=TES+2.D0*A(I,J)*A(I,J)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1)
util.f:185:72:
185 | DO 165 J=1,IUU1
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 165 at (1)
util.f:202:72:
202 | IF(K-I)140,135,135
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
util.f:207:72:
207 | 140 IF(K-J)145,150,150
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
util.f:223:72:
223 | IF(M-1)175,170,170
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
util.f:226:72:
226 | 175 IF(TES-RHO)180,180,105
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
util.f:228:72:
228 | DO 190 J=1,N
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 190 at (1)
util.f:229:72:
229 | 190 A(I,J)=SCL*A(I,J)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 190 at (1)
util.f:478:72:
478 | IF(NDIM-6)5,5,2
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
util.f:484:72:
484 | IF(I-NDIM)3,6,6
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
gfortran -O -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -ffast-math -c -o util.o util.f
util.f:168:72:
168 | DO 20 J=1,N
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1)
util.f:169:72:
169 | 20 A(I,J)=A(I,J)/SCL
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
util.f:171:72:
171 | DO 30 J=1,N
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1)
util.f:177:72:
177 | DO 100 J=1,IU1
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1)
util.f:178:72:
178 | 100 TES=TES+2.D0*A(I,J)*A(I,J)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1)
util.f:185:72:
185 | DO 165 J=1,IUU1
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 165 at (1)
util.f:202:72:
202 | IF(K-I)140,135,135
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
util.f:207:72:
207 | 140 IF(K-J)145,150,150
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
util.f:223:72:
223 | IF(M-1)175,170,170
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
util.f:226:72:
226 | 175 IF(TES-RHO)180,180,105
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
util.f:228:72:
228 | DO 190 J=1,N
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 190 at (1)
util.f:229:72:
229 | 190 A(I,J)=SCL*A(I,J)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 190 at (1)
util.f:478:72:
478 | IF(NDIM-6)5,5,2
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
util.f:484:72:
484 | IF(I-NDIM)3,6,6
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
mpif77 -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong -o mdp aver.o cpu_mpi.o input.o forces.o main.o mdee.o mdstep.o restart.o mpi.o pimd.o service.o setup.o util.o
gfortran -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong -o md aver.o cpu_intel.o input.o forces.o main.o mdee.o mdstep.o restart.o scalar.o service.o setup.o util.o
make[1]: Leaving directory '/wrkdirs/usr/ports/science/mdynamix/work/mdynamix'
/usr/local/bin/ld: main.o: in function `MAIN__':
main.f:(.text+0x15e0): undefined reference to `iunits_'
/usr/local/bin/ld: main.f:(.text+0x279c): undefined reference to `fcc_'
/usr/local/bin/ld: main.f:(.text+0x2888): undefined reference to `dnasol_'
/usr/local/bin/ld: main.f:(.text+0x2890): undefined reference to `sphole_'
/usr/local/bin/ld: main.f:(.text+0x28e4): undefined reference to `cubic_'
/usr/local/bin/ld: main.f:(.text+0x3d50): undefined reference to `bndlst_'
/usr/local/bin/ld: main.f:(.text+0x4c0c): undefined reference to `pullini_'
collect2: error: ld returned 1 exit status
make[1]: *** [Makefile.mpi:10: default] Error 1
make[1]: Leaving directory '/wrkdirs/usr/ports/science/mdynamix/work/mdynamix'
gmake: *** [Makefile:15: mpi] Error 2
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/mdynamix