[package - 134releng-armv7-default][science/lammps] Failed for lammps-20241119_1 in configure
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Date: Tue, 11 Feb 2025 00:26:15 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere3/data/134releng-armv7-default/5beddb013d54/logs/lammps-20241119_1.log
Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=134releng-armv7-default&build=5beddb013d54
Log:
=>> Building science/lammps
build started at Tue Feb 11 00:25:18 UTC 2025
port directory: /usr/ports/science/lammps
package name: lammps-20241119_1
building for: FreeBSD 134releng-armv7-default-job-08 13.4-RELEASE-p3 FreeBSD 13.4-RELEASE-p3 1304000 arm
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 6170 Feb 4 01:02 /usr/ports/science/lammps/Makefile
Ports top last git commit: 5beddb013d5
Ports top unclean checkout: no
Port dir last git commit: e54e2c695bb
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500028
Jail OSVERSION: 1304000
Job Id: 08
---Begin Environment---
SHELL=/bin/csh
OSVERSION=1304000
UNAME_v=FreeBSD 13.4-RELEASE-p3 1304000
UNAME_r=13.4-RELEASE-p3
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.2
MASTERMNT=/usr/local/poudriere/data/.m/134releng-armv7-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/134releng-armv7-default/08/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=134releng-armv7-default
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SCRIPTNAME=bulk.sh
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POUDRIERE_PKGNAME=poudriere-git-3.4.2
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for lammps-20241119_1:
EXCEPTIONS=on: Enable the use of C++ exceptions
FFMPEG=on: FFmpeg support (WMA, AIFF, AC3, APE...)
GZIP=on: Enable GZIP support
JPEG=on: JPEG image format support
PNG=on: PNG image format support
====> Enable parallelizations:
MPI=on: MPI (Message Passing Interface) support
OPENMP=on: Parallel processing support via OpenMP
====> Enable packages:
H5MD=on: H5MD package based on the libhdf5 library
KIM=on: KIM package based on the OpenKim library/repository
KOKKOS=on: Kokkos package based on the libkokkos library
LATTE=on: Latte package based on the liblatte library
NETCDF=on: NetCDF package based on the NetCDF library
PLUMED=on: Plumed package based on the plumed library
VORONOI=on: Voro++, Voronoi tessellation package
VTK=off: VTK package based on the external VTK-9 library
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
BLA_VENDOR="OpenBLAS" F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" PYTHON="/usr/local/bin/python3.11" PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/science/lammps/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/lammps/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/lammps/work/.cache HOME=/wrkdirs/usr/ports/science/lammps/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/lammps/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/lammps/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
--End CONFIGURE_ENV--
--MAKE_ENV--
F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" XDG_DATA_HOME=/wrkdirs/usr/ports/science/lammps/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/lammps/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/lammps/work/.cache HOME=/wrkdirs/usr/ports/science/lammps/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/lammps/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/lammps/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/
bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
EXCEPTIONS="" NO_EXCEPTIONS="@comment " FFMPEG="" NO_FFMPEG="@comment " GZIP="" NO_GZIP="@comment " H5MD="" NO_H5MD="@comment " JPEG="" NO_JPEG="@comment " KIM="" NO_KIM="@comment " KOKKOS="" NO_KOKKOS="@comment " LATTE="" NO_LATTE="@comment " MPI="" NO_MPI="@comment " NETCDF="" NO_NETCDF="@comment " OPENMP="" NO_OPENMP="@comment " PLUMED="" NO_PLUMED="@comment " PNG="" NO_PNG="@comment " VORONOI="" NO_VORONOI="@comment " VTK="@comment " NO_VTK="" CMAKE_BUILD_TYPE="release" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" GTK4_VERSION="4.0.0" PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=13.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/lammps" EXAMPLESDIR="share/examples/lammps" DATADIR="share/lammps" WWWDIR=
"www/lammps" ETCDIR="etc/lammps"
--End PLIST_SUB--
--SUB_LIST--
EXCEPTIONS="" NO_EXCEPTIONS="@comment " FFMPEG="" NO_FFMPEG="@comment " GZIP="" NO_GZIP="@comment " H5MD="" NO_H5MD="@comment " JPEG="" NO_JPEG="@comment " KIM="" NO_KIM="@comment " KOKKOS="" NO_KOKKOS="@comment " LATTE="" NO_LATTE="@comment " MPI="" NO_MPI="@comment " NETCDF="" NO_NETCDF="@comment " OPENMP="" NO_OPENMP="@comment " PLUMED="" NO_PLUMED="@comment " PNG="" NO_PNG="@comment " VORONOI="" NO_VORONOI="@comment " VTK="@comment " NO_VTK="" PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/lammps DOCSDIR=/usr/local/share/doc/lammps EXAMPLESDIR=/usr/local/share/examples/lammps WWWDIR=/usr/local/www/lammps ETCDIR=/usr/local/etc/lammps
--End SUB_LIST--
---Begin make.conf---
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> lammps-20241119_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.0.5.pkg
[134releng-armv7-default-job-08] Installing pkg-2.0.5...
[134releng-armv7-default-job-08] Extracting pkg-2.0.5: .......... done
===> lammps-20241119_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of lammps-20241119_1
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by lammps-20241119_1 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by lammps-20241119_1 for building
=> SHA256 Checksum OK for lammps-lammps-20241119-patch_19Nov2024_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by lammps-20241119_1 for building
===> Extracting for lammps-20241119_1
=> SHA256 Checksum OK for lammps-lammps-20241119-patch_19Nov2024_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for lammps-20241119_1
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> lammps-20241119_1 depends on executable: ffmpeg - not found
<snip>
[134releng-armv7-default-job-08] `-- Extracting lapack-3.12.1: .......... done
[134releng-armv7-default-job-08] Extracting eigen-3.4.0_4: .......... done
=====
Message from gcc13-13.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc13
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> lammps-20241119_1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found
===> Returning to build of lammps-20241119_1
===> lammps-20241119_1 depends on executable: gfortran13 - found
===> lammps-20241119_1 depends on executable: cython-3.11 - not found
===> Installing existing package /packages/All/py311-cython-0.29.37_1.pkg
[134releng-armv7-default-job-08] Installing py311-cython-0.29.37_1...
[134releng-armv7-default-job-08] `-- Installing py311-setuptools-63.1.0_1...
[134releng-armv7-default-job-08] `-- Extracting py311-setuptools-63.1.0_1: .......... done
[134releng-armv7-default-job-08] Extracting py311-cython-0.29.37_1: .......... done
===> lammps-20241119_1 depends on executable: cython-3.11 - found
===> Returning to build of lammps-20241119_1
===> lammps-20241119_1 depends on file: /usr/local/bin/python3.11 - found
===> lammps-20241119_1 depends on package: pkgconf>=1.3.0_1 - not found
===> Installing existing package /packages/All/pkgconf-2.3.0,1.pkg
[134releng-armv7-default-job-08] Installing pkgconf-2.3.0,1...
[134releng-armv7-default-job-08] Extracting pkgconf-2.3.0,1: .......... done
===> lammps-20241119_1 depends on package: pkgconf>=1.3.0_1 - found
===> Returning to build of lammps-20241119_1
===> lammps-20241119_1 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> lammps-20241119_1 depends on shared library: libevent.so - not found
===> Installing existing package /packages/All/libevent-2.1.12.pkg
[134releng-armv7-default-job-08] Installing libevent-2.1.12...
[134releng-armv7-default-job-08] Extracting libevent-2.1.12: .......... done
===> lammps-20241119_1 depends on shared library: libevent.so - found (/usr/local/lib/libevent.so)
===> Returning to build of lammps-20241119_1
===> lammps-20241119_1 depends on shared library: libfftw3.so - not found
===> Installing existing package /packages/All/fftw3-3.3.10_5.pkg
[134releng-armv7-default-job-08] Installing fftw3-3.3.10_5...
[134releng-armv7-default-job-08] Extracting fftw3-3.3.10_5: .......... done
===> lammps-20241119_1 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so)
===> Returning to build of lammps-20241119_1
===> lammps-20241119_1 depends on shared library: libhwloc.so - not found
===> Installing existing package /packages/All/hwloc2-2.11.2.pkg
[134releng-armv7-default-job-08] Installing hwloc2-2.11.2...
[134releng-armv7-default-job-08] `-- Installing level-zero-1.17.45...
[134releng-armv7-default-job-08] | `-- Installing libfmt-10.2.1...
[134releng-armv7-default-job-08] | `-- Extracting libfmt-10.2.1: .......... done
[134releng-armv7-default-job-08] | `-- Installing spdlog-1.15.1...
[134releng-armv7-default-job-08] | `-- Extracting spdlog-1.15.1: .......... done
[134releng-armv7-default-job-08] `-- Extracting level-zero-1.17.45: .......... done
[134releng-armv7-default-job-08] Extracting hwloc2-2.11.2: .......... done
===> lammps-20241119_1 depends on shared library: libhwloc.so - found (/usr/local/lib/libhwloc.so)
===> Returning to build of lammps-20241119_1
===> lammps-20241119_1 depends on shared library: libnghttp2.so - not found
===> Installing existing package /packages/All/libnghttp2-1.64.0.pkg
[134releng-armv7-default-job-08] Installing libnghttp2-1.64.0...
[134releng-armv7-default-job-08] Extracting libnghttp2-1.64.0: .......... done
===> lammps-20241119_1 depends on shared library: libnghttp2.so - found (/usr/local/lib/libnghttp2.so)
===> Returning to build of lammps-20241119_1
===> lammps-20241119_1 depends on shared library: libpciaccess.so - found (/usr/local/lib/libpciaccess.so)
===> lammps-20241119_1 depends on shared library: libssh2.so - not found
===> Installing existing package /packages/All/libssh2-1.11.1,3.pkg
[134releng-armv7-default-job-08] Installing libssh2-1.11.1,3...
[134releng-armv7-default-job-08] Extracting libssh2-1.11.1,3: .......... done
===> lammps-20241119_1 depends on shared library: libssh2.so - found (/usr/local/lib/libssh2.so)
===> Returning to build of lammps-20241119_1
===> lammps-20241119_1 depends on shared library: libzstd.so - found (/usr/local/lib/libzstd.so)
===> lammps-20241119_1 depends on shared library: libhdf5.so - not found
===> Installing existing package /packages/All/hdf5-1.12.2_2,1.pkg
[134releng-armv7-default-job-08] Installing hdf5-1.12.2_2,1...
[134releng-armv7-default-job-08] `-- Installing libaec-1.1.3...
[134releng-armv7-default-job-08] `-- Extracting libaec-1.1.3: .......... done
[134releng-armv7-default-job-08] Extracting hdf5-1.12.2_2,1: .......... done
===> lammps-20241119_1 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so)
===> Returning to build of lammps-20241119_1
===> lammps-20241119_1 depends on shared library: libkim-api.so - not found
===> Installing existing package /packages/All/kim-api-2.3.0_1.pkg
[134releng-armv7-default-job-08] Installing kim-api-2.3.0_1...
[134releng-armv7-default-job-08] Extracting kim-api-2.3.0_1: .......... done
===> lammps-20241119_1 depends on shared library: libkim-api.so - found (/usr/local/lib/libkim-api.so)
===> Returning to build of lammps-20241119_1
===> lammps-20241119_1 depends on shared library: libcurl.so - not found
===> Installing existing package /packages/All/curl-8.11.1_1.pkg
[134releng-armv7-default-job-08] Installing curl-8.11.1_1...
[134releng-armv7-default-job-08] `-- Installing libpsl-0.21.5_1...
[134releng-armv7-default-job-08] `-- Extracting libpsl-0.21.5_1: .......... done
[134releng-armv7-default-job-08] Extracting curl-8.11.1_1: .......... done
===> lammps-20241119_1 depends on shared library: libcurl.so - found (/usr/local/lib/libcurl.so)
===> Returning to build of lammps-20241119_1
===> lammps-20241119_1 depends on shared library: libkokkoscore.so - not found
===> Installing existing package /packages/All/kokkos-4.5.01.pkg
[134releng-armv7-default-job-08] Installing kokkos-4.5.01...
[134releng-armv7-default-job-08] `-- Installing bash-5.2.37...
[134releng-armv7-default-job-08] `-- Extracting bash-5.2.37: .......... done
[134releng-armv7-default-job-08] Extracting kokkos-4.5.01: .......... done
===> lammps-20241119_1 depends on shared library: libkokkoscore.so - found (/usr/local/lib/libkokkoscore.so)
===> Returning to build of lammps-20241119_1
===> lammps-20241119_1 depends on shared library: liblatte.so - not found
===> Installing existing package /packages/All/latte-1.2.2_6.pkg
[134releng-armv7-default-job-08] Installing latte-1.2.2_6...
[134releng-armv7-default-job-08] `-- Installing openblas-0.3.29_1,2...
[134releng-armv7-default-job-08] `-- Extracting openblas-0.3.29_1,2: .......... done
[134releng-armv7-default-job-08] `-- Installing openmpi4-4.1.6_1...
[134releng-armv7-default-job-08] | `-- Installing libltdl-2.5.4...
[134releng-armv7-default-job-08] | `-- Extracting libltdl-2.5.4: .......... done
[134releng-armv7-default-job-08] | `-- Installing munge-0.5.16...
[134releng-armv7-default-job-08] | | `-- Installing libgcrypt-1.11.0...
[134releng-armv7-default-job-08] | | `-- Installing libgpg-error-1.51...
[134releng-armv7-default-job-08] | | `-- Extracting libgpg-error-1.51: .......... done
[134releng-armv7-default-job-08] | | `-- Extracting libgcrypt-1.11.0: .......... done
[134releng-armv7-default-job-08] | `-- Extracting munge-0.5.16: ......... done
[134releng-armv7-default-job-08] `-- Extracting openmpi4-4.1.6_1: .......... done
[134releng-armv7-default-job-08] Extracting latte-1.2.2_6: ......... done
=====
Message from openmpi4-4.1.6_1:
--
===> NOTICE:
The openmpi4 port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
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===> lammps-20241119_1 depends on shared library: liblatte.so - found (/usr/local/lib/liblatte.so)
===> Returning to build of lammps-20241119_1
===> lammps-20241119_1 depends on shared library: libmpi_cxx.so - found (/usr/local/mpi/openmpi/lib/libmpi_cxx.so)
===> lammps-20241119_1 depends on shared library: libnetcdf.so - not found
===> Installing existing package /packages/All/netcdf-4.9.2_1.pkg
[134releng-armv7-default-job-08] Installing netcdf-4.9.2_1...
[134releng-armv7-default-job-08] Extracting netcdf-4.9.2_1: .......... done
===> lammps-20241119_1 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so)
===> Returning to build of lammps-20241119_1
===> lammps-20241119_1 depends on shared library: libplumed.so - not found
===> Installing existing package /packages/All/plumed-2.9.3_1.pkg
[134releng-armv7-default-job-08] Installing plumed-2.9.3_1...
[134releng-armv7-default-job-08] `-- Installing gsl-2.7.1_1...
[134releng-armv7-default-job-08] `-- Extracting gsl-2.7.1_1: .......... done
[134releng-armv7-default-job-08] Extracting plumed-2.9.3_1: .......... done
===> lammps-20241119_1 depends on shared library: libplumed.so - found (/usr/local/lib/libplumed.so)
===> Returning to build of lammps-20241119_1
===> lammps-20241119_1 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so)
===> lammps-20241119_1 depends on shared library: libvoro++.so - not found
===> Installing existing package /packages/All/voro++-0.4.6_2.pkg
[134releng-armv7-default-job-08] Installing voro++-0.4.6_2...
[134releng-armv7-default-job-08] Extracting voro++-0.4.6_2: .......... done
===> lammps-20241119_1 depends on shared library: libvoro++.so - found (/usr/local/lib/libvoro++.so)
===> Returning to build of lammps-20241119_1
===> lammps-20241119_1 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===> lammps-20241119_1 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so)
===> lammps-20241119_1 depends on shared library: libjpeg.so - found (/usr/local/lib/libjpeg.so)
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for lammps-20241119_1
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/lammps/work/.build
CMake Deprecation Warning at CMakeLists.txt:18 (cmake_policy):
The OLD behavior for policy CMP0109 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
-- The CXX compiler identification is Clang 18.1.6
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Could NOT find Git (missing: GIT_EXECUTABLE)
-- Running check for auto-generated files from make-based build system
-- Found MPI_CXX: /usr/local/mpi/openmpi/lib/libmpi_cxx.so (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
CMake Error at /usr/local/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:233 (message):
Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS OpenMP_CXX_LIB_NAMES)
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:603 (_FPHSA_FAILURE_MESSAGE)
/usr/local/share/cmake/Modules/FindOpenMP.cmake:616 (find_package_handle_standard_args)
CMakeLists.txt:450 (find_package)
-- Configuring incomplete, errors occurred!
*** Error code 1
Stop.
make: stopped in /usr/ports/science/lammps