From nobody Sun Feb 02 08:03:05 2025 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Ym2Dp12QFz5lxV0 for ; Sun, 02 Feb 2025 08:03:06 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R11" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Ym2Dn1JWcz40xb for ; Sun, 02 Feb 2025 08:03:05 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1738483385; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=lf8IQPEFaTKH2l4P79xqgNwfMqdOPL7Nr76XtIB8cxU=; b=uzMJe03v/zbHCaYr9Mb5C2FwxzmiUDFge6P5Y2gKOXYLfwdi4ORHcfFdLOnHJFNbqi4Syz IeirsLIM+nVfD+k8AZ6FBFgVAj5U1K7h7k7fOlKgQJDtvwCA3cwGaVDtxWhgnzAm/NMubI pLsAan7VIOlBumjIWXrGYipxv1p7ty+KQU0OrvzwcWHZlxYi43OWUPWUp9YeNWoNGYXScH Tubrp2vJA4yX+ikXWDdOyR81jxUs/DpcpFG9J/4loqqOywTZ2hm4/8KFwovKKvLguv5yWA 2+cmUjF2T066/bFwuYw8Slr9Ci8VtIMCKdHWAn141IK4BKayDgMv1Tch9lKFnA== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1738483385; a=rsa-sha256; cv=none; b=PQ7+beIu3oQ330O8RC4d53srLkOoiNeAV4EaGHMcIiwe/XmpMDegg3oJIjNZM4inixdbEs w3TpvD2Gpk17fahnGV2VuREtw1bpSKecxgkYoEj9juKKHwyVJk4/PJwHfsY+tXuzjPphX0 jCGUlH7IqUYSX6gxuM2N3BZBTcvaZsJxv3XEuf9i8XOgC7RZWQwSjAHKhUQ7vGMt8JCKJw SwMW6KvdEFo3z7FVFXtEzGPw1dtOxuFD9xeQ5TTfjbDCcvPHDdAau8aKO0YY8G8tFRIWT3 Fm0eCDf8m+zkrYvKiFm9aivGf2Pxb9YqM9hoB98UBbpjmWYqQGDElR9A/KYyQQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none Received: from ampere3.nyi.freebsd.org (ampere3.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:26]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4Ym2Dn0tbWzjHg for ; Sun, 02 Feb 2025 08:03:05 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 1454 by ampere3.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on ampere3.nyi.freebsd.org); Sun, 02 Feb 2025 08:03:05 +0000 To: pkg-fallout@FreeBSD.org Subject: [package - 141releng-armv7-default][biology/seqwish] Failed for seqwish-0.7.11_1 in configure Date: Sun, 02 Feb 2025 08:03:05 +0000 Message-Id: <679f26b9.1454.35796986@ampere3.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@FreeBSD.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere3/data/141releng-armv7-default/86e28c84a7e0/logs/seqwish-0.7.11_1.log Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=141releng-armv7-default&build=86e28c84a7e0 Log: =>> Building biology/seqwish build started at Sun Feb 2 08:02:59 UTC 2025 port directory: /usr/ports/biology/seqwish package name: seqwish-0.7.11_1 building for: FreeBSD 141releng-armv7-default-job-12 14.1-RELEASE-p6 FreeBSD 14.1-RELEASE-p6 1401000 arm maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 952 Dec 24 01:06 /usr/ports/biology/seqwish/Makefile Ports top last git commit: 86e28c84a7e Ports top unclean checkout: no Port dir last git commit: cd7939810fe Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500028 Jail OSVERSION: 1401000 Job Id: 12 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1401000 UNAME_v=FreeBSD 14.1-RELEASE-p6 1401000 UNAME_r=14.1-RELEASE-p6 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/141releng-armv7-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/141releng-armv7-default/12/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=141releng-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/141releng-armv7-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for seqwish-0.7.11_1: OPENMP=on: Parallel processing support via OpenMP ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install - m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=14.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seqwish" EXAMPLESDIR="share/examples/seqwish" DATADIR="share/seqwish" WWWDIR="www/seqwish" ETCDIR="etc/seqwish" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seqwish DOCSDIR=/usr/local/share/doc/seqwish EXAMPLESDIR=/usr/local/share/examples/seqwish WWWDIR=/usr/local/www/seqwish ETCDIR=/usr/local/etc/seqwish --End SUB_LIST-- ---Begin make.conf--- # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seqwish-0.7.11_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.3.pkg [141releng-armv7-default-job-12] Installing pkg-1.21.3... [141releng-armv7-default-job-12] Extracting pkg-1.21.3: .......... done ===> seqwish-0.7.11_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of seqwish-0.7.11_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by seqwish-0.7.11_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by seqwish-0.7.11_1 for building => SHA256 Checksum OK for seqwish-v0.7.11.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by seqwish-0.7.11_1 for building ===> Extracting for seqwish-0.7.11_1 => SHA256 Checksum OK for seqwish-v0.7.11.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for seqwish-0.7.11_1 ===> Applying FreeBSD patches for seqwish-0.7.11_1 from /usr/ports/biology/seqwish/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seqwish-0.7.11_1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.4.pkg [141releng-armv7-default-job-12] Installing cmake-core-3.31.4... [141releng-armv7-default-job-12] `-- Installing expat-2.6.4... [141releng-armv7-default-job-12] `-- Extracting expat-2.6.4: .......... done [141releng-armv7-default-job-12] `-- Installing jsoncpp-1.9.6_1... [141releng-armv7-default-job-12] `-- Extracting jsoncpp-1.9.6_1: .......... done [141releng-armv7-default-job-12] `-- Installing libidn2-2.3.7... [141releng-armv7-default-job-12] | `-- Installing indexinfo-0.3.1... [141releng-armv7-default-job-12] | `-- Extracting indexinfo-0.3.1: .... done [141releng-armv7-default-job-12] | `-- Installing libunistring-1.3... [141releng-armv7-default-job-12] | `-- Extracting libunistring-1.3: .......... done [141releng-armv7-default-job-12] `-- Extracting libidn2-2.3.7: .......... done [141releng-armv7-default-job-12] `-- Installing libuv-1.50.0... [141releng-armv7-default-job-12] `-- Extracting libuv-1.50.0: .......... done [141releng-armv7-default-job-12] `-- Installing rhash-1.4.4_1... [141releng-armv7-default-job-12] | `-- Installing gettext-runtime-0.23.1... [141releng-armv7-default-job-12] | `-- Extracting gettext-runtime-0.23.1: .......... done [141releng-armv7-default-job-12] `-- Extracting rhash-1.4.4_1: .......... done [141releng-armv7-default-job-12] Extracting cmake-core-3.31.4: .......... done ===> seqwish-0.7.11_1 depends on file: /usr/local/bin/cmake - found ===> Returning to build of seqwish-0.7.11_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for seqwish-0.7.11_1 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/seqwish/work/.build CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is Clang 18.1.5 -- The CXX compiler identification is Clang 18.1.5 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - failed -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - broken CMake Error at /usr/local/share/cmake/Modules/CMakeTestCXXCompiler.cmake:73 (message): The C++ compiler "/usr/bin/c++" is not able to compile a simple test program. It fails with the following output: Change Dir: '/wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/CMakeScratch/TryCompile-J0bfdZ' Run Build Command(s): /usr/local/bin/cmake -E env VERBOSE=1 /usr/bin/make -f Makefile cmTC_3e5ec/fast /usr/bin/make -f CMakeFiles/cmTC_3e5ec.dir/build.make CMakeFiles/cmTC_3e5ec.dir/build Building CXX object CMakeFiles/cmTC_3e5ec.dir/testCXXCompiler.cxx.o /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp -MD -MT CMakeFiles/cmTC_3e5ec.dir/testCXXCompiler.cxx.o -MF CMakeFiles/cmTC_3e5ec.dir/testCXXCompiler.cxx.o.d -o CMakeFiles/cmTC_3e5ec.dir/testCXXCompiler.cxx.o -c /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/CMakeScratch/TryCompile-J0bfdZ/testCXXCompiler.cxx Linking CXX executable cmTC_3e5ec /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_3e5ec.dir/link.txt --verbose=1 ld: error: unable to find library -lomp c++: error: linker command failed with exit code 1 (use -v to see invocation) /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp CMakeFiles/cmTC_3e5ec.dir/testCXXCompiler.cxx.o -o cmTC_3e5ec *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/CMakeScratch/TryCompile-J0bfdZ *** Error code 1 Stop. make: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/CMakeScratch/TryCompile-J0bfdZ CMake will not be able to correctly generate this project. Call Stack (most recent call first): CMakeLists.txt:6 (project) -- Configuring incomplete, errors occurred! *** Error code 1 Stop. make: stopped in /usr/ports/biology/seqwish