[package - 135amd64-default][biology/ncbi-cxx-toolkit] Failed for ncbi-cxx-toolkit-29.7.0 in build
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Date: Wed, 03 Dec 2025 18:33:10 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy16/data/135amd64-default/e32b2ab0cd58/logs/ncbi-cxx-toolkit-29.7.0.log
Build URL: https://pkg-status.freebsd.org/beefy16/build.html?mastername=135amd64-default&build=e32b2ab0cd58
Log:
=>> Building biology/ncbi-cxx-toolkit
build started at Wed Dec 3 18:30:02 -00 2025
port directory: /usr/ports/biology/ncbi-cxx-toolkit
package name: ncbi-cxx-toolkit-29.7.0
building for: FreeBSD 135amd64-default-job-11 13.5-RELEASE-p7 FreeBSD 13.5-RELEASE-p7 amd64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1609 Nov 8 01:03 /usr/ports/biology/ncbi-cxx-toolkit/Makefile
Ports top last git commit: e32b2ab0cd5827a2114e31177b36327d19a79d65
Ports top unclean checkout: no
Port dir last git commit: 118b49380838da67632bece0503fb73b8226754a
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.4-7-gd0e6e138
Host OSVERSION: 1600000
Jail OSVERSION: 1305000
Job Id: 11
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MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
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LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
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SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--without-debug --with-dll --without-static --without-vdb --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=/usr/local/bin/gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--
--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 OPENSSLBASE=/usr OPENSSLDIR=/etc/ssl OPENSSLINC=/usr/include OPENSSLLIB=/usr/lib XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="in
stall -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=13.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.42.0 PERL_VER=5.42 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.42 DOCSDIR="share/doc/ncbi-cxx-toolkit" EXAMPLESDIR="share/examples/ncbi-cxx-toolkit" DATADIR="share/ncbi-cxx-toolkit" WWWDIR="www/ncbi-cxx-toolkit" ETCDIR="etc/ncbi-cxx-toolkit"
--End PLIST_SUB--
--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-cxx-toolkit DOCSDIR=/usr/local/share/doc/ncbi-cxx-toolkit EXAMPLESDIR=/usr/local/share/examples/ncbi-cxx-toolkit WWWDIR=/usr/local/www/ncbi-cxx-toolkit ETCDIR=/usr/local/etc/ncbi-cxx-toolkit
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> ncbi-cxx-toolkit-29.7.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.4.2_1.pkg
[135amd64-default-job-11] Installing pkg-2.4.2_1...
[135amd64-default-job-11] Extracting pkg-2.4.2_1: .......... done
===> ncbi-cxx-toolkit-29.7.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ncbi-cxx-toolkit-29.7.0
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-29.7.0 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-29.7.0 for building
=> SHA256 Checksum OK for ncbi-ncbi-cxx-toolkit-public-release-29.7.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-29.7.0 for building
===> Extracting for ncbi-cxx-toolkit-29.7.0
=> SHA256 Checksum OK for ncbi-ncbi-cxx-toolkit-public-release-29.7.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for ncbi-cxx-toolkit-29.7.0
===> Applying FreeBSD patches for ncbi-cxx-toolkit-29.7.0 from /usr/ports/biology/ncbi-cxx-toolkit/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> ncbi-cxx-toolkit-29.7.0 depends on package: gmake>=4.4.1 - not found
===> Installing existing package /packages/All/gmake-4.4.1.pkg
[135amd64-default-job-11] Installing gmake-4.4.1...
[135amd64-default-job-11] `-- Installing gettext-runtime-0.23.1...
[135amd64-default-job-11] | `-- Installing indexinfo-0.3.1_1...
[135amd64-default-job-11] | `-- Extracting indexinfo-0.3.1_1: .... done
[135amd64-default-job-11] `-- Extracting gettext-runtime-0.23.1: .......... done
[135amd64-default-job-11] Extracting gmake-4.4.1: .......... done
===> ncbi-cxx-toolkit-29.7.0 depends on package: gmake>=4.4.1 - found
===> Returning to build of ncbi-cxx-toolkit-29.7.0
===> ncbi-cxx-toolkit-29.7.0 depends on file: /usr/local/bin/python3.11 - not found
===> Installing existing package /packages/All/python311-3.11.14.pkg
[135amd64-default-job-11] Installing python311-3.11.14...
[135amd64-default-job-11] `-- Installing libffi-3.5.1...
[135amd64-default-job-11] `-- Extracting libffi-3.5.1: .......... done
[135amd64-default-job-11] `-- Installing mpdecimal-4.0.1...
[135amd64-default-job-11] `-- Extracting mpdecimal-4.0.1: .......... done
[135amd64-default-job-11] `-- Installing readline-8.3.1...
[135amd64-default-job-11] `-- Extracting readline-8.3.1: .......... done
[135amd64-default-job-11] Extracting python311-3.11.14: .......... done
=====
Message from python311-3.11.14:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
<snip>
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64 internal/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/internal/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/gui/Makefile
/usr/local/bin/gmake -C corelib --jobserver-auth=fifo:/tmp/GMfifo26030 all_r || exit 5
gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
gmake[4]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
NOTE: skipping project "test_boost" due to unmet requirements
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
gmake[4]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
NOTE: skipping project "test_boost" due to unmet requirements
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbimtx.cpp:803:11: warning: increment of object of volatile-qualified type 'volatile long' is deprecated [-Wdeprecated-volatile]
803 | (*val)++;
| ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbimtx.cpp:821:11: warning: increment of object of volatile-qualified type 'volatile long' is deprecated [-Wdeprecated-volatile]
821 | (*val)++;
| ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbimtx.cpp:839:11: warning: decrement of object of volatile-qualified type 'volatile long' is deprecated [-Wdeprecated-volatile]
839 | (*val)--;
| ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbimtx.cpp:857:11: warning: decrement of object of volatile-qualified type 'volatile long' is deprecated [-Wdeprecated-volatile]
857 | (*val)--;
| ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbimtx.cpp:1295:13: warning: increment of object of volatile-qualified type 'volatile unsigned int' is deprecated [-Wdeprecated-volatile]
1295 | ++m_WaitingWriters;
| ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbimtx.cpp:1304:13: warning: decrement of object of volatile-qualified type 'volatile unsigned int' is deprecated [-Wdeprecated-volatile]
1304 | --m_WaitingWriters;
| ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbimtx.cpp:1517:13: warning: increment of object of volatile-qualified type 'volatile unsigned int' is deprecated [-Wdeprecated-volatile]
1517 | ++m_WaitingWriters;
| ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbimtx.cpp:1533:17: warning: decrement of object of volatile-qualified type 'volatile unsigned int' is deprecated [-Wdeprecated-volatile]
1533 | --m_WaitingWriters;
| ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbimtx.cpp:1541:13: warning: decrement of object of volatile-qualified type 'volatile unsigned int' is deprecated [-Wdeprecated-volatile]
1541 | --m_WaitingWriters;
| ^
9 warnings generated.
PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0. Program arguments: /usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbitime.cpp -o ncbitime.o
1. /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbitime.cpp:1504:9: current parser token '.'
2. /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbitime.cpp:77:1 <Spelling=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include/corelib/ncbistl.hpp:72:25>: parsing namespace 'ncbi'
3. /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbitime.cpp:1497:1: parsing function body 'ncbi::CTime::SetTimeDBI'
4. /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbitime.cpp:1497:1: in compound statement ('{}')
#0 0x00000000055395b1 (/usr/bin/c+++0x55395b1)
#1 0x0000000005537565 (/usr/bin/c+++0x5537565)
#2 0x0000000005503628 (/usr/bin/c+++0x5503628)
#3 0x000000082b356310 (/lib/libthr.so.3+0x1a310)
#4 0x000000082b3558db (/lib/libthr.so.3+0x198db)
c++: error: clang frontend command failed with exit code 138 (use -v to see invocation)
FreeBSD clang version 19.1.7 (https://github.com/llvm/llvm-project.git llvmorg-19.1.7-0-gcd708029e0b2)
Target: x86_64-unknown-freebsd13.5
Thread model: posix
InstalledDir: /usr/bin
c++: note: diagnostic msg:
********************
PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
c++: note: diagnostic msg: /tmp/ncbitime-74bfb8.cpp
c++: note: diagnostic msg: /tmp/ncbitime-74bfb8.sh
c++: note: diagnostic msg:
********************
gmake[4]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/Makefile.rules:103: ncbitime.o] Error 1
gmake[4]: *** Waiting for unfinished jobs....
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
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/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o
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/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/env_reg.cpp -o env_reg.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/metareg.cpp -o metareg.o
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/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbi_process.cpp -o ncbi_process.o
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/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbi_stack.cpp -o ncbi_stack.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbi_system.cpp -o ncbi_system.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbiapp.cpp -o ncbiapp.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbiargs.cpp -o ncbiargs.o
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/usr/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 ncbicfg.c -o ncbicfg.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbidbg.cpp -o ncbidbg.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbidiag.cpp -o ncbidiag.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbidll.cpp -o ncbidll.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbienv.cpp -o ncbienv.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbiexec.cpp -o ncbiexec.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbiexpt.cpp -o ncbiexpt.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbifile.cpp -o ncbifile.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbimempool.cpp -o ncbimempool.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbimtx.cpp -o ncbimtx.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbiobj.cpp -o ncbiobj.o
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/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/ncbitime.cpp -o ncbitime.o
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/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/include -DNCBI_BUILD_SESSION_ID=5460b7c3-d076-11f0-af51-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/corelib/plugin_manager.cpp -o plugin_manager.o
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
FAILED: src/corelib/Makefile.corelib.lib
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build/corelib'
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gmake[1]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.7.0/Clang1917-ReleaseMTDLL64/build'
gmake: *** [Makefile:24: all] Error 2
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
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