[package - 142amd64-default][science/pastix] Failed for pastix-6.3.2_2 in lib-depends
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Date: Thu, 24 Apr 2025 06:09:27 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: thierry@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy22/data/142amd64-default/b2b492ce9c72/logs/pastix-6.3.2_2.log
Build URL: https://pkg-status.freebsd.org/beefy22/build.html?mastername=142amd64-default&build=b2b492ce9c72
Log:
=>> Building science/pastix
build started at Thu Apr 24 06:07:40 UTC 2025
port directory: /usr/ports/science/pastix
package name: pastix-6.3.2_2
building for: FreeBSD 142amd64-default-job-01 14.2-RELEASE-p3 FreeBSD 14.2-RELEASE-p3 amd64
maintained by: thierry@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1837 Apr 1 01:01 /usr/ports/science/pastix/Makefile
Ports top last git commit: b2b492ce9c
Ports top unclean checkout: no
Port dir last git commit: 099df7445d
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2-11-gfa886a3d
Host OSVERSION: 1500035
Jail OSVERSION: 1402000
Job Id: 01
---Begin Environment---
SHELL=/bin/sh
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LANG=C.UTF-8
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PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.2-11-gfa886a3d
MASTERMNT=/usr/local/poudriere/data/.m/142amd64-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
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---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for pastix-6.3.2_2:
EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
thierry@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
BLA_VENDOR="OpenBLAS" F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/pastix/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/pastix/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/pastix/work/.cache HOME=/wrkdirs/usr/ports/science/pastix/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/pastix/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/pastix/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" XDG_DATA_HOME=/wrkdirs/usr/ports/science/pastix/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/pastix/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/pastix/work/.cache HOME=/wrkdirs/usr/ports/science/pastix/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/pastix/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/pastix/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/
bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -lm -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
VER=6.3.2 PORTEXAMPLES="" CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/pastix" EXAMPLESDIR="share/examples/pastix" DATADIR="share/pastix" WWWDIR="www/pastix" ETCDIR="etc/pastix"
--End PLIST_SUB--
--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pastix DOCSDIR=/usr/local/share/doc/pastix EXAMPLESDIR=/usr/local/share/examples/pastix WWWDIR=/usr/local/www/pastix ETCDIR=/usr/local/etc/pastix
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
pipebuf (-y) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> NOTICE:
This port is deprecated; you may wish to reconsider installing it:
Depends on expired lang/julia.
It is scheduled to be removed on or after 2025-06-01.
===> License LGPL3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> pastix-6.3.2_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.1.1.pkg
[142amd64-default-job-01] Installing pkg-2.1.1...
[142amd64-default-job-01] Extracting pkg-2.1.1: .......... done
===> pastix-6.3.2_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of pastix-6.3.2_2
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> NOTICE:
This port is deprecated; you may wish to reconsider installing it:
Depends on expired lang/julia.
It is scheduled to be removed on or after 2025-06-01.
===> License LGPL3 accepted by the user
===> Fetching all distfiles required by pastix-6.3.2_2 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> NOTICE:
This port is deprecated; you may wish to reconsider installing it:
Depends on expired lang/julia.
It is scheduled to be removed on or after 2025-06-01.
===> License LGPL3 accepted by the user
===> Fetching all distfiles required by pastix-6.3.2_2 for building
=> SHA256 Checksum OK for pastix-6.3.2.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> NOTICE:
This port is deprecated; you may wish to reconsider installing it:
Depends on expired lang/julia.
It is scheduled to be removed on or after 2025-06-01.
===> License LGPL3 accepted by the user
===> Fetching all distfiles required by pastix-6.3.2_2 for building
===> Extracting for pastix-6.3.2_2
=> SHA256 Checksum OK for pastix-6.3.2.tar.gz.
<snip>
[142amd64-default-job-01] | `-- Extracting indexinfo-0.3.1_1: .... done
[142amd64-default-job-01] `-- Extracting gettext-runtime-0.23.1: .......... done
[142amd64-default-job-01] `-- Installing readline-8.2.13_2...
[142amd64-default-job-01] `-- Extracting readline-8.2.13_2: .......... done
[142amd64-default-job-01] Extracting bash-5.2.37: .......... done
===> pastix-6.3.2_2 depends on executable: bash - found
===> Returning to build of pastix-6.3.2_2
===> pastix-6.3.2_2 depends on package: py311-numpy>=1.16,1<1.27,1 - not found
===> Installing existing package /packages/All/py311-numpy-1.26.4_6,1.pkg
[142amd64-default-job-01] Installing py311-numpy-1.26.4_6,1...
[142amd64-default-job-01] `-- Installing gcc13-13.3.0_2...
[142amd64-default-job-01] | `-- Installing binutils-2.44,1...
[142amd64-default-job-01] | | `-- Installing zstd-1.5.7...
[142amd64-default-job-01] | | `-- Installing liblz4-1.10.0,1...
[142amd64-default-job-01] | | `-- Extracting liblz4-1.10.0,1: .......... done
[142amd64-default-job-01] | | `-- Extracting zstd-1.5.7: .......... done
[142amd64-default-job-01] | `-- Extracting binutils-2.44,1: .......... done
[142amd64-default-job-01] | `-- Installing gmp-6.3.0...
[142amd64-default-job-01] | `-- Extracting gmp-6.3.0: .......... done
[142amd64-default-job-01] | `-- Installing mpc-1.3.1_1...
[142amd64-default-job-01] | | `-- Installing mpfr-4.2.2,1...
[142amd64-default-job-01] | | `-- Extracting mpfr-4.2.2,1: .......... done
[142amd64-default-job-01] | `-- Extracting mpc-1.3.1_1: ......... done
[142amd64-default-job-01] `-- Extracting gcc13-13.3.0_2: .......... done
[142amd64-default-job-01] `-- Installing openblas-0.3.29_1,2...
[142amd64-default-job-01] `-- Extracting openblas-0.3.29_1,2: .......... done
[142amd64-default-job-01] `-- Installing python311-3.11.12...
[142amd64-default-job-01] | `-- Installing libffi-3.4.8...
[142amd64-default-job-01] | `-- Extracting libffi-3.4.8: .......... done
[142amd64-default-job-01] | `-- Installing mpdecimal-4.0.0...
[142amd64-default-job-01] | `-- Extracting mpdecimal-4.0.0: .......... done
[142amd64-default-job-01] `-- Extracting python311-3.11.12: .......... done
[142amd64-default-job-01] `-- Installing suitesparse-umfpack-6.3.5_1...
[142amd64-default-job-01] | `-- Installing suitesparse-amd-3.3.3...
[142amd64-default-job-01] | | `-- Installing suitesparse-config-7.10.2...
[142amd64-default-job-01] | | `-- Extracting suitesparse-config-7.10.2: .......... done
[142amd64-default-job-01] | `-- Extracting suitesparse-amd-3.3.3: .......... done
[142amd64-default-job-01] | `-- Installing suitesparse-camd-3.3.3...
[142amd64-default-job-01] | `-- Extracting suitesparse-camd-3.3.3: .......... done
[142amd64-default-job-01] | `-- Installing suitesparse-ccolamd-3.3.4...
[142amd64-default-job-01] | `-- Extracting suitesparse-ccolamd-3.3.4: .......... done
[142amd64-default-job-01] | `-- Installing suitesparse-cholmod-5.3.2...
[142amd64-default-job-01] | | `-- Installing suitesparse-colamd-3.3.4...
[142amd64-default-job-01] | | `-- Extracting suitesparse-colamd-3.3.4: .......... done
[142amd64-default-job-01] | `-- Extracting suitesparse-cholmod-5.3.2: .......... done
[142amd64-default-job-01] `-- Extracting suitesparse-umfpack-6.3.5_1: .......... done
[142amd64-default-job-01] Extracting py311-numpy-1.26.4_6,1: .......... done
=====
Message from gcc13-13.3.0_2:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc13
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python311-3.11.12:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py311-gdbm databases/py-gdbm@py311
py311-sqlite3 databases/py-sqlite3@py311
py311-tkinter x11-toolkits/py-tkinter@py311
===> pastix-6.3.2_2 depends on package: py311-numpy>=1.16,1<1.27,1 - found
===> Returning to build of pastix-6.3.2_2
===> pastix-6.3.2_2 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.31.6.pkg
[142amd64-default-job-01] Installing cmake-core-3.31.6...
[142amd64-default-job-01] `-- Installing expat-2.7.1...
[142amd64-default-job-01] `-- Extracting expat-2.7.1: .......... done
[142amd64-default-job-01] `-- Installing jsoncpp-1.9.6_1...
[142amd64-default-job-01] `-- Extracting jsoncpp-1.9.6_1: .......... done
[142amd64-default-job-01] `-- Installing libidn2-2.3.8...
[142amd64-default-job-01] | `-- Installing libunistring-1.3...
[142amd64-default-job-01] | `-- Extracting libunistring-1.3: .......... done
[142amd64-default-job-01] `-- Extracting libidn2-2.3.8: .......... done
[142amd64-default-job-01] `-- Installing libuv-1.50.0...
[142amd64-default-job-01] `-- Extracting libuv-1.50.0: .......... done
[142amd64-default-job-01] `-- Installing rhash-1.4.4_1...
[142amd64-default-job-01] `-- Extracting rhash-1.4.4_1: .......... done
[142amd64-default-job-01] Extracting cmake-core-3.31.6: .......... done
===> pastix-6.3.2_2 depends on file: /usr/local/bin/cmake - found
===> Returning to build of pastix-6.3.2_2
===> pastix-6.3.2_2 depends on executable: gfortran13 - found
===> pastix-6.3.2_2 depends on package: pkgconf>=1.3.0_1 - not found
===> Installing existing package /packages/All/pkgconf-2.3.0,1.pkg
[142amd64-default-job-01] Installing pkgconf-2.3.0,1...
[142amd64-default-job-01] Extracting pkgconf-2.3.0,1: .......... done
===> pastix-6.3.2_2 depends on package: pkgconf>=1.3.0_1 - found
===> Returning to build of pastix-6.3.2_2
===> pastix-6.3.2_2 depends on file: /usr/local/bin/python3.11 - found
===> pastix-6.3.2_2 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> pastix-6.3.2_2 depends on shared library: libmetis.so - not found
===> Installing existing package /packages/All/metis-5.1.0.p13,1.pkg
[142amd64-default-job-01] Installing metis-5.1.0.p13,1...
[142amd64-default-job-01] Extracting metis-5.1.0.p13,1: .......... done
=====
Message from metis-5.1.0.p13,1:
--
===> NOTICE:
The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> pastix-6.3.2_2 depends on shared library: libmetis.so - found (/usr/local/lib/libmetis.so)
===> Returning to build of pastix-6.3.2_2
===> pastix-6.3.2_2 depends on shared library: libjulia.so - not found
===> Installing existing package /packages/All/julia-1.10.3_6.pkg
[142amd64-default-job-01] Installing julia-1.10.3_6...
[142amd64-default-job-01] `-- Installing 7-zip-24.09...
[142amd64-default-job-01] | `-- Installing libsysinfo-0.0.3_3...
[142amd64-default-job-01] | `-- Extracting libsysinfo-0.0.3_3: ......... done
[142amd64-default-job-01] `-- Extracting 7-zip-24.09: .......... done
[142amd64-default-job-01] `-- Installing ca_root_nss-3.108...
[142amd64-default-job-01] `-- Extracting ca_root_nss-3.108: ....... done
Scanning /usr/share/certs/untrusted for certificates...
Scanning /usr/share/certs/trusted for certificates...
Scanning /usr/local/share/certs for certificates...
[142amd64-default-job-01] `-- Installing curl-8.13.0...
[142amd64-default-job-01] | `-- Installing brotli-1.1.0,1...
[142amd64-default-job-01] | `-- Extracting brotli-1.1.0,1: .......... done
[142amd64-default-job-01] | `-- Installing libnghttp2-1.65.0...
[142amd64-default-job-01] | `-- Extracting libnghttp2-1.65.0: .......... done
[142amd64-default-job-01] | `-- Installing libpsl-0.21.5_2...
[142amd64-default-job-01] | `-- Extracting libpsl-0.21.5_2: .......... done
[142amd64-default-job-01] | `-- Installing libssh2-1.11.1,3...
[142amd64-default-job-01] | `-- Extracting libssh2-1.11.1,3: .......... done
[142amd64-default-job-01] `-- Extracting curl-8.13.0: .......... done
[142amd64-default-job-01] `-- Installing dSFMT-2.2.5_1...
[142amd64-default-job-01] `-- Extracting dSFMT-2.2.5_1: .......... done
[142amd64-default-job-01] `-- Installing libgit2-1.9.0...
[142amd64-default-job-01] | `-- Installing http-parser-2.9.4...
[142amd64-default-job-01] | `-- Extracting http-parser-2.9.4: ....... done
[142amd64-default-job-01] | `-- Installing pcre2-10.45...
[142amd64-default-job-01] | `-- Extracting pcre2-10.45: .......... done
[142amd64-default-job-01] `-- Extracting libgit2-1.9.0: .......... done
[142amd64-default-job-01] `-- Installing libunwind-20240221_2...
[142amd64-default-job-01] `-- Extracting libunwind-20240221_2: .......... done
[142amd64-default-job-01] `-- Installing mbedtls2-2.28.9...
[142amd64-default-job-01] `-- Extracting mbedtls2-2.28.9: .......... done
[142amd64-default-job-01] `-- Installing openlibm-0.8.6...
[142amd64-default-job-01] `-- Extracting openlibm-0.8.6: .......... done
[142amd64-default-job-01] `-- Installing perl5-5.36.3_3...
[142amd64-default-job-01] `-- Extracting perl5-5.36.3_3: .......... done
[142amd64-default-job-01] `-- Installing utf8proc-2.10.0...
[142amd64-default-job-01] `-- Extracting utf8proc-2.10.0: .......... done
pkg-static: Missing shlib dependency: libjulia-internal.so.1.10
Failed to install the following 1 package(s): /packages/All/julia-1.10.3_6.pkg
=====
Message from ca_root_nss-3.108:
--
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.
Assessment and verification of trust is the complete responsibility of
the system administrator.
This package installs symlinks to support root certificate discovery
for software that either uses other cryptographic libraries than
OpenSSL, or use OpenSSL but do not follow recommended practice.
If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.
* /etc/ssl/cert.pem
* /usr/local/etc/ssl/cert.pem
* /usr/local/openssl/cert.pem
=====
Message from mbedtls2-2.28.9:
--
===> NOTICE:
This port is deprecated; you may wish to reconsider installing it:
Upstream support ends at the end of 2024.
It is scheduled to be removed on or after 2024-12-31.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/pastix