[package - 133amd64-default][science/rdkit] Failed for rdkit-2024.03.6 in checksum
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Date: Thu, 05 Sep 2024 19:06:52 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy16/data/133amd64-default/b9994ae18767/logs/rdkit-2024.03.6.log
Build URL: https://pkg-status.freebsd.org/beefy16/build.html?mastername=133amd64-default&build=b9994ae18767
Log:
=>> Building science/rdkit
build started at Thu Sep 5 19:06:38 UTC 2024
port directory: /usr/ports/science/rdkit
package name: rdkit-2024.03.6
building for: FreeBSD 133amd64-default-job-08 13.3-RELEASE-p6 FreeBSD 13.3-RELEASE-p6 amd64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 3056 Sep 3 01:01 /usr/ports/science/rdkit/Makefile
Ports top last git commit: b9994ae1876
Ports top unclean checkout: no
Port dir last git commit: ba44d373cd8
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500023
Jail OSVERSION: 1303001
Job Id: 08
---Begin Environment---
SHELL=/bin/csh
OSVERSION=1303001
UNAME_v=FreeBSD 13.3-RELEASE-p6
UNAME_r=13.3-RELEASE-p6
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.2
MASTERMNT=/usr/local/poudriere/data/.m/133amd64-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/133amd64-default/08/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=133amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/133amd64-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.2
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for rdkit-2024.03.6:
DOCS=on: Build and/or install documentation
PGSQL=off: Build the PostgreSQL cartridge
PYTHON=on: Python bindings or support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/rdkit/work/.cache HOME=/wrkdirs/usr/ports/science/rdkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/rdkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/rdkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/rdkit/work/.cache HOME=/wrkdirs/usr/ports/science/rdkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/rdkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/rdkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/rdkit/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_I
NSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
SHLIB_VER=2024.03.6 PORTDOCS="" DOCS="" NO_DOCS="@comment " PGSQL="@comment " NO_PGSQL="" PYTHON="" NO_PYTHON="@comment " LITTLE_ENDIAN="" CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=13.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/RDKit" EXAMPLESDIR="share/examples/rdkit" DATADIR="share/RDKit" WWWDIR="www/rdkit" ETCDIR="etc/rdkit"
--End PLIST_SUB--
--SUB_LIST--
DOCS="" NO_DOCS="@comment " PGSQL="@comment " NO_PGSQL="" PYTHON="" NO_PYTHON="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/RDKit DOCSDIR=/usr/local/share/doc/RDKit EXAMPLESDIR=/usr/local/share/examples/rdkit WWWDIR=/usr/local/www/rdkit ETCDIR=/usr/local/etc/rdkit
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> rdkit-2024.03.6 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[133amd64-default-job-08] Installing pkg-1.21.3...
[133amd64-default-job-08] Extracting pkg-1.21.3: .......... done
===> rdkit-2024.03.6 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of rdkit-2024.03.6
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
=> ComicNeue-Regular.ttf doesn't seem to exist in /portdistfiles/rdkit-2024.03.6.
=> Attempting to fetch https://fonts.google.com/download?family=Comic%20Neue&dummy=/ComicNeue-Regular.ttf
fetch: https://fonts.google.com/download?family=Comic%20Neue&dummy=/ComicNeue-Regular.ttf: size unknown
fetch: https://fonts.google.com/download?family=Comic%20Neue&dummy=/ComicNeue-Regular.ttf: size of remote file is not known
ComicNeue-Regular.ttf 21 kB 134 MBps 00s
=> rdkit-rdkit-Release_2024_03_6_GH0.tar.gz doesn't seem to exist in /portdistfiles/rdkit-2024.03.6.
=> Attempting to fetch https://codeload.github.com/rdkit/rdkit/tar.gz/Release_2024_03_6?dummy=/rdkit-rdkit-Release_2024_03_6_GH0.tar.gz
fetch: https://codeload.github.com/rdkit/rdkit/tar.gz/Release_2024_03_6?dummy=/rdkit-rdkit-Release_2024_03_6_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/rdkit/rdkit/tar.gz/Release_2024_03_6?dummy=/rdkit-rdkit-Release_2024_03_6_GH0.tar.gz: size of remote file is not known
rdkit-rdkit-Release_2024_03_6_GH0.tar.gz 76 MB 11 MBps 07s
=> rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz doesn't seem to exist in /portdistfiles/rdkit-2024.03.6.
=> Attempting to fetch https://codeload.github.com/rareylab/RingDecomposerLib/tar.gz/v1.1.3_rdkit?dummy=/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz
fetch: https://codeload.github.com/rareylab/RingDecomposerLib/tar.gz/v1.1.3_rdkit?dummy=/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/rareylab/RingDecomposerLib/tar.gz/v1.1.3_rdkit?dummy=/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz: size of remote file is not known
rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz 134 kB 5318 kBps 00s
===> Fetching all distfiles required by rdkit-2024.03.6 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by rdkit-2024.03.6 for building
=> SHA256 Checksum mismatch for rdkit-2024.03.6/ComicNeue-Regular.ttf.
=> SHA256 Checksum OK for rdkit-2024.03.6/rdkit-rdkit-Release_2024_03_6_GH0.tar.gz.
=> SHA256 Checksum OK for rdkit-2024.03.6/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz.
===> Refetch for 1 more times files: rdkit-2024.03.6/ComicNeue-Regular.ttf
===> License BSD3CLAUSE accepted by the user
=> ComicNeue-Regular.ttf doesn't seem to exist in /portdistfiles/rdkit-2024.03.6.
=> Attempting to fetch https://fonts.google.com/download?family=Comic%20Neue&dummy=/ComicNeue-Regular.ttf
fetch: https://fonts.google.com/download?family=Comic%20Neue&dummy=/ComicNeue-Regular.ttf: size unknown
fetch: https://fonts.google.com/download?family=Comic%20Neue&dummy=/ComicNeue-Regular.ttf: size of remote file is not known
ComicNeue-Regular.ttf 21 kB 140 MBps 00s
===> Fetching all distfiles required by rdkit-2024.03.6 for building
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by rdkit-2024.03.6 for building
=> SHA256 Checksum mismatch for rdkit-2024.03.6/ComicNeue-Regular.ttf.
=> SHA256 Checksum OK for rdkit-2024.03.6/rdkit-rdkit-Release_2024_03_6_GH0.tar.gz.
=> SHA256 Checksum OK for rdkit-2024.03.6/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz.
===> Giving up on fetching files: rdkit-2024.03.6/ComicNeue-Regular.ttf
Make sure the Makefile and distinfo file (/usr/ports/science/rdkit/distinfo)
are up to date. If you are absolutely sure you want to override this
check, type "make NO_CHECKSUM=yes [other args]".
*** Error code 1
Stop.
make[1]: stopped in /usr/ports/science/rdkit
*** Error code 1
Stop.
make: stopped in /usr/ports/science/rdkit