[package - main-armv7-default][databases/py-tiledb] Failed for py311-tiledb-0.31.1 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Wed, 04 Sep 2024 18:20:55 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     sunpoet@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/p15d22e1c70da_s871911a4a/logs/py311-tiledb-0.31.1.log
Build URL:      https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=p15d22e1c70da_s871911a4a
Log:

=>> Building databases/py-tiledb
build started at Wed Sep  4 18:13:12 UTC 2024
port directory: /usr/ports/databases/py-tiledb
package name: py311-tiledb-0.31.1
building for: FreeBSD main-armv7-default-job-07 15.0-CURRENT FreeBSD 15.0-CURRENT 1500023 arm
maintained by: sunpoet@FreeBSD.org
Makefile datestamp: -rw-r--r--  1 root wheel 1244 Aug 11 01:02 /usr/ports/databases/py-tiledb/Makefile
Ports top last git commit: 15d22e1c70d
Ports top unclean checkout: no
Port dir last git commit: 7d92511cb3d
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500019
Jail OSVERSION: 1500023
Job Id: 07




!!! Jail is newer than host. (Jail: 1500023, Host: 1500019) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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sunpoet@FreeBSD.org
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--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py311  XDG_CONFIG_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py311  XDG_CACHE_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py311/.cache  HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/databases/py-tiledb/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/databases/py-tiledb/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
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BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
####  ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
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# try the next if the size is mismatched though.
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GID=0
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=======================<phase: check-sanity   >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py311-tiledb-0.31.1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.21.3.pkg
[main-armv7-default-job-07] Installing pkg-1.21.3...
[main-armv7-default-job-07] Extracting pkg-1.21.3: .......... done
===>   py311-tiledb-0.31.1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py311-tiledb-0.31.1
===========================================================================
=======================<phase: fetch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License MIT accepted by the user
===> Fetching all distfiles required by py311-tiledb-0.31.1 for building
===========================================================================
=======================<phase: checksum       >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License MIT accepted by the user
===> Fetching all distfiles required by py311-tiledb-0.31.1 for building
=> SHA256 Checksum OK for tiledb-0.31.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract        >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License MIT accepted by the user
===> Fetching all distfiles required by py311-tiledb-0.31.1 for building
===>  Extracting for py311-tiledb-0.31.1
=> SHA256 Checksum OK for tiledb-0.31.1.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Patching for py311-tiledb-0.31.1
===>  Applying FreeBSD patches for py311-tiledb-0.31.1 from /usr/ports/databases/py-tiledb/files
===========================================================================
=======================<phase: build-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py311-tiledb-0.31.1 depends on package: py311-numpy>=1.25,1 - not found
===>   Installing existing package /packages/All/py311-numpy-1.26.4_2,1.pkg
[main-armv7-default-job-07] Installing py311-numpy-1.26.4_2,1...
[main-armv7-default-job-07] `-- Installing gcc13-13.2.0_4...
[main-armv7-default-job-07] |   `-- Installing binutils-2.40_6,1...
[main-armv7-default-job-07] |   | `-- Installing gettext-runtime-0.22.5...
[main-armv7-default-job-07] |   |   `-- Installing indexinfo-0.3.1...
[main-armv7-default-job-07] |   |   `-- Extracting indexinfo-0.3.1: .... done
[main-armv7-default-job-07] |   | `-- Extracting gettext-runtime-0.22.5: .......... done
<snip>
py311-sqlite3    databases/py-sqlite3@py311
py311-tkinter    x11-toolkits/py-tkinter@py311
===>   py311-tiledb-0.31.1 depends on package: py311-numpy>=1.25,1 - found
===>   Returning to build of py311-tiledb-0.31.1
===>   py311-tiledb-0.31.1 depends on package: py311-pybind11>=0 - not found
===>   Installing existing package /packages/All/py311-pybind11-2.13.5.pkg
[main-armv7-default-job-07] Installing py311-pybind11-2.13.5...
[main-armv7-default-job-07] Extracting py311-pybind11-2.13.5: .......... done
===>   py311-tiledb-0.31.1 depends on package: py311-pybind11>=0 - found
===>   Returning to build of py311-tiledb-0.31.1
===>   py311-tiledb-0.31.1 depends on package: py311-scikit-build-core>=0 - not found
===>   Installing existing package /packages/All/py311-scikit-build-core-0.10.5.pkg
[main-armv7-default-job-07] Installing py311-scikit-build-core-0.10.5...
[main-armv7-default-job-07] `-- Installing py311-packaging-24.1...
[main-armv7-default-job-07] `-- Extracting py311-packaging-24.1: .......... done
[main-armv7-default-job-07] `-- Installing py311-pathspec-0.12.1...
[main-armv7-default-job-07] `-- Extracting py311-pathspec-0.12.1: .......... done
[main-armv7-default-job-07] Extracting py311-scikit-build-core-0.10.5: .......... done
===>   py311-tiledb-0.31.1 depends on package: py311-scikit-build-core>=0 - found
===>   Returning to build of py311-tiledb-0.31.1
===>   py311-tiledb-0.31.1 depends on package: py311-setuptools-scm>=1.5.4 - not found
===>   Installing existing package /packages/All/py311-setuptools-scm-8.0.4.pkg
[main-armv7-default-job-07] Installing py311-setuptools-scm-8.0.4...
[main-armv7-default-job-07] `-- Installing py311-typing-extensions-4.12.2...
[main-armv7-default-job-07] `-- Extracting py311-typing-extensions-4.12.2: .......... done
[main-armv7-default-job-07] Extracting py311-setuptools-scm-8.0.4: .......... done
===>   py311-tiledb-0.31.1 depends on package: py311-setuptools-scm>=1.5.4 - found
===>   Returning to build of py311-tiledb-0.31.1
===>   py311-tiledb-0.31.1 depends on package: tiledb>=2.25.0 - not found
===>   Installing existing package /packages/All/tiledb-2.25.0_1.pkg
[main-armv7-default-job-07] Installing tiledb-2.25.0_1...
[main-armv7-default-job-07] `-- Installing capnproto1-1.0.1...
[main-armv7-default-job-07] `-- Extracting capnproto1-1.0.1: .......... done
[main-armv7-default-job-07] `-- Installing catch2-3.7.0...
[main-armv7-default-job-07] `-- Extracting catch2-3.7.0: .......... done
[main-armv7-default-job-07] `-- Installing clipp-1.2.3_1...
[main-armv7-default-job-07] `-- Extracting clipp-1.2.3_1: .... done
[main-armv7-default-job-07] `-- Installing curl-8.9.1_1...
[main-armv7-default-job-07] |   `-- Installing libnghttp2-1.62.1...
[main-armv7-default-job-07] |   `-- Extracting libnghttp2-1.62.1: .......... done
[main-armv7-default-job-07] |   `-- Installing libpsl-0.21.5_1...
[main-armv7-default-job-07] |   | `-- Installing libidn2-2.3.7...
[main-armv7-default-job-07] |   |   `-- Installing libunistring-1.2...
[main-armv7-default-job-07] |   |   `-- Extracting libunistring-1.2: .......... done
[main-armv7-default-job-07] |   | `-- Extracting libidn2-2.3.7: .......... done
[main-armv7-default-job-07] |   `-- Extracting libpsl-0.21.5_1: .......... done
[main-armv7-default-job-07] |   `-- Installing libssh2-1.11.0_1,3...
[main-armv7-default-job-07] |   `-- Extracting libssh2-1.11.0_1,3: .......... done
[main-armv7-default-job-07] `-- Extracting curl-8.9.1_1: .......... done
[main-armv7-default-job-07] `-- Installing libfmt-10.2.1...
[main-armv7-default-job-07] `-- Extracting libfmt-10.2.1: .......... done
[main-armv7-default-job-07] `-- Installing spdlog-1.14.1...
[main-armv7-default-job-07] `-- Extracting spdlog-1.14.1: .......... done
[main-armv7-default-job-07] Extracting tiledb-2.25.0_1: .......... done
===>   py311-tiledb-0.31.1 depends on package: tiledb>=2.25.0 - found
===>   Returning to build of py311-tiledb-0.31.1
===>   py311-tiledb-0.31.1 depends on file: /usr/local/bin/cmake - not found
===>   Installing existing package /packages/All/cmake-core-3.30.2.pkg
[main-armv7-default-job-07] Installing cmake-core-3.30.2...
[main-armv7-default-job-07] `-- Installing expat-2.6.2...
[main-armv7-default-job-07] `-- Extracting expat-2.6.2: .......... done
[main-armv7-default-job-07] `-- Installing jsoncpp-1.9.5...
[main-armv7-default-job-07] `-- Extracting jsoncpp-1.9.5: .......... done
[main-armv7-default-job-07] `-- Installing libuv-1.48.0...
[main-armv7-default-job-07] `-- Extracting libuv-1.48.0: .......... done
[main-armv7-default-job-07] `-- Installing rhash-1.4.4_1...
[main-armv7-default-job-07] `-- Extracting rhash-1.4.4_1: .......... done
[main-armv7-default-job-07] Extracting cmake-core-3.30.2: .......... done
===>   py311-tiledb-0.31.1 depends on file: /usr/local/bin/cmake - found
===>   Returning to build of py311-tiledb-0.31.1
===>   py311-tiledb-0.31.1 depends on executable: cython-3.11 - not found
===>   Installing existing package /packages/All/py311-cython-0.29.37_1.pkg
[main-armv7-default-job-07] Installing py311-cython-0.29.37_1...
[main-armv7-default-job-07] Extracting py311-cython-0.29.37_1: .......... done
===>   py311-tiledb-0.31.1 depends on executable: cython-3.11 - found
===>   Returning to build of py311-tiledb-0.31.1
===>   py311-tiledb-0.31.1 depends on file: /usr/local/bin/python3.11 - found
===>   py311-tiledb-0.31.1 depends on package: py311-build>=0 - not found
===>   Installing existing package /packages/All/py311-build-1.2.1.pkg
[main-armv7-default-job-07] Installing py311-build-1.2.1...
[main-armv7-default-job-07] `-- Installing py311-pyproject_hooks-1.1.0_1...
[main-armv7-default-job-07] `-- Extracting py311-pyproject_hooks-1.1.0_1: .......... done
[main-armv7-default-job-07] Extracting py311-build-1.2.1: .......... done
===>   py311-tiledb-0.31.1 depends on package: py311-build>=0 - found
===>   Returning to build of py311-tiledb-0.31.1
===>   py311-tiledb-0.31.1 depends on package: py311-installer>=0 - not found
===>   Installing existing package /packages/All/py311-installer-0.7.0.pkg
[main-armv7-default-job-07] Installing py311-installer-0.7.0...
[main-armv7-default-job-07] Extracting py311-installer-0.7.0: .......... done
===>   py311-tiledb-0.31.1 depends on package: py311-installer>=0 - found
===>   Returning to build of py311-tiledb-0.31.1
===========================================================================
=======================<phase: lib-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py311-tiledb-0.31.1 depends on shared library: libtiledb.so - found (/usr/local/lib/libtiledb.so)
===========================================================================
=======================<phase: configure      >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Configuring for py311-tiledb-0.31.1
===========================================================================
=======================<phase: build          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Building for py311-tiledb-0.31.1
* Getting build dependencies for wheel...
* Building wheel...
*** scikit-build-core 0.10.5 using CMake 3.30.2 (wheel)
*** Configuring CMake...
loading initial cache file /tmp/tmpcv4f8pjg/build/CMakeInit.txt
-- The C compiler identification is Clang 18.1.6
-- The CXX compiler identification is Clang 18.1.6
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python: /usr/local/bin/python3.11 (found version "3.11.9") found components: Interpreter Development.Module NumPy
-- Performing Test HAS_FLTO_THIN
-- Performing Test HAS_FLTO_THIN - Success
-- Found pybind11: /usr/local/lib/python3.11/site-packages/pybind11/include (found version "2.13.5")
-- Found external TileDB core library
-- Using libtiledb path: /usr/local/lib/cmake/TileDB
-- Setting RPATH for targets "main" and "libtiledb" to /usr/local/lib
-- Setting RPATH for target "cc" to /usr/local/lib
-- Configuring done (3.0s)
-- Generating done (0.1s)
-- Build files have been written to: /tmp/tmpcv4f8pjg/build
*** Building project with Unix Makefiles...
[  3%] Generating libtiledb.cc
/usr/local/lib/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /wrkdirs/usr/ports/databases/py-tiledb/work-py311/tiledb-0.31.1/tiledb/libtiledb.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
[  6%] Building CXX object tiledb/CMakeFiles/libtiledb.dir/libtiledb.cc.o
In file included from /tmp/tmpcv4f8pjg/build/tiledb/libtiledb.cc:761:
In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5:
In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929:
/usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "          "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^
/tmp/tmpcv4f8pjg/build/tiledb/libtiledb.cc:102731:34: warning: increment of object of volatile-qualified type '__pyx_atomic_int' (aka 'volatile int') is deprecated [-Wdeprecated-volatile]
 102731 |     result = (*acquisition_count)++;
        |                                  ^
/tmp/tmpcv4f8pjg/build/tiledb/libtiledb.cc:102741:34: warning: decrement of object of volatile-qualified type '__pyx_atomic_int' (aka 'volatile int') is deprecated [-Wdeprecated-volatile]
 102741 |     result = (*acquisition_count)--;
        |                                  ^
3 warnings generated.
[  9%] Linking CXX shared module libtiledb.cpython-311.so
[  9%] Built target libtiledb
[ 12%] Building CXX object tiledb/CMakeFiles/main.dir/main.cc.o
[ 15%] Building CXX object tiledb/CMakeFiles/main.dir/core.cc.o
[ 18%] Building CXX object tiledb/CMakeFiles/main.dir/npbuffer.cc.o
[ 21%] Building CXX object tiledb/CMakeFiles/main.dir/fragment.cc.o
[ 24%] Building CXX object tiledb/CMakeFiles/main.dir/schema_evolution.cc.o
[ 27%] Building CXX object tiledb/CMakeFiles/main.dir/util.cc.o
[ 30%] Building CXX object tiledb/CMakeFiles/main.dir/serialization.cc.o
[ 33%] Building CXX object tiledb/CMakeFiles/main.dir/tests/test_metadata.cc.o
[ 36%] Building CXX object tiledb/CMakeFiles/main.dir/tests/test_webp.cc.o
[ 39%] Building CXX object tiledb/CMakeFiles/main.dir/tests/test_serialization.cc.o
In file included from /wrkdirs/usr/ports/databases/py-tiledb/work-py311/tiledb-0.31.1/tiledb/tests/test_serialization.cc:2:
In file included from /usr/local/lib/python3.11/site-packages/pybind11/include/pybind11/numpy.h:12:
In file included from /usr/local/lib/python3.11/site-packages/pybind11/include/pybind11/pybind11.h:13:
In file included from /usr/local/lib/python3.11/site-packages/pybind11/include/pybind11/detail/class.h:12:
In file included from /usr/local/lib/python3.11/site-packages/pybind11/include/pybind11/attr.h:13:
/usr/local/lib/python3.11/site-packages/pybind11/include/pybind11/detail/common.h:513:19: error: static assertion failed due to requirement 'sizeof(unsigned long long) <= sizeof(int)': Implicit narrowing is not permitted.
  513 |     static_assert(sizeof(IntType) <= sizeof(ssize_t), "Implicit narrowing is not permitted.");
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/python3.11/site-packages/pybind11/include/pybind11/pytypes.h:1678:57: note: in instantiation of function template specialization 'pybind11::ssize_t_cast<unsigned long long>' requested here
 1678 |         : object(PYBIND11_BYTES_FROM_STRING_AND_SIZE(c, ssize_t_cast(n)), stolen_t{}) {
      |                                                         ^
/wrkdirs/usr/ports/databases/py-tiledb/work-py311/tiledb-0.31.1/tiledb/tests/test_serialization.cc:78:15: note: in instantiation of function template specialization 'pybind11::bytes::bytes<unsigned long long, 0>' requested here
   78 |     py::bytes output((char *)buff_data, buff_num_bytes);
      |               ^
/usr/local/lib/python3.11/site-packages/pybind11/include/pybind11/detail/common.h:513:35: note: expression evaluates to '8 <= 4'
  513 |     static_assert(sizeof(IntType) <= sizeof(ssize_t), "Implicit narrowing is not permitted.");
      |                   ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
1 error generated.
*** Error code 1

Stop.
make[2]: stopped making "tiledb/CMakeFiles/main.dir/build" in /tmp/tmpcv4f8pjg/build
*** Error code 1

Stop.
make[1]: stopped making "all" in /tmp/tmpcv4f8pjg/build
*** Error code 1

Stop.
make: stopped making "default_target" in /tmp/tmpcv4f8pjg/build

*** CMake build failed

ERROR Backend subprocess exited when trying to invoke build_wheel
*** Error code 1

Stop.
make: stopped making "build" in /usr/ports/databases/py-tiledb