[package - 133releng-armv7-default][devel/py-pykdtree] Failed for py311-pykdtree-1.3.12 in build
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Date: Tue, 03 Sep 2024 22:49:28 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: sunpoet@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere3/data/133releng-armv7-default/1b6eada811a7/logs/py311-pykdtree-1.3.12.log Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=133releng-armv7-default&build=1b6eada811a7 Log: =>> Building devel/py-pykdtree build started at Tue Sep 3 22:48:39 UTC 2024 port directory: /usr/ports/devel/py-pykdtree package name: py311-pykdtree-1.3.12 building for: FreeBSD 133releng-armv7-default-job-08 13.3-RELEASE-p5 FreeBSD 13.3-RELEASE-p5 1303001 arm maintained by: sunpoet@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 848 Apr 27 01:08 /usr/ports/devel/py-pykdtree/Makefile Ports top last git commit: 1b6eada811a Ports top unclean checkout: no Port dir last git commit: 10127c6ab04 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500019 Jail OSVERSION: 1303001 Job Id: 08 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1303001 UNAME_v=FreeBSD 13.3-RELEASE-p5 1303001 UNAME_r=13.3-RELEASE-p5 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/133releng-armv7-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/133releng-armv7-default/08/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=133releng-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/133releng-armv7-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- sunpoet@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/devel/py-pykdtree/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/devel/py-pykdtree/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/devel/py-pykdtree/work-py311/.cache HOME=/wrkdirs/usr/ports/devel/py-pykdtree/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/devel/py-pykdtree/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/devel/py-pykdtree/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/devel/py-pykdtree/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/devel/py-pykdtree/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/devel/py-pykdtree/work-py311/.cache HOME=/wrkdirs/usr/ports/devel/py-pykdtree/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/devel/py-pykdtree/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/devel/py-pykdtree/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=13.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py311-pykdtree" EXAMPLESDIR="share/examples/py311-pykdtree" DATADIR="share/py311-pykdtree" WWWDIR="www/py311-pykdtree" ETCDIR="etc/py311-pykdtree" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py311-pykdtree DOCSDIR=/usr/local/share/doc/py311-pykdtree EXAMPLESDIR=/usr/local/share/examples/py311-pykdtree WWWDIR=/usr/local/www/py311-pykdtree ETCDIR=/usr/local/etc/py311-pykdtree --End SUB_LIST-- ---Begin make.conf--- # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pykdtree-1.3.12 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.3.pkg [133releng-armv7-default-job-08] Installing pkg-1.21.3... [133releng-armv7-default-job-08] Extracting pkg-1.21.3: .......... done ===> py311-pykdtree-1.3.12 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-pykdtree-1.3.12 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL3 accepted by the user ===> Fetching all distfiles required by py311-pykdtree-1.3.12 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL3 accepted by the user ===> Fetching all distfiles required by py311-pykdtree-1.3.12 for building => SHA256 Checksum OK for pykdtree-1.3.12.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL3 accepted by the user ===> Fetching all distfiles required by py311-pykdtree-1.3.12 for building ===> Extracting for py311-pykdtree-1.3.12 => SHA256 Checksum OK for pykdtree-1.3.12.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py311-pykdtree-1.3.12 ===> Applying FreeBSD patches for py311-pykdtree-1.3.12 from /usr/ports/devel/py-pykdtree/files =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pykdtree-1.3.12 depends on package: py311-cython3>=0 - not found ===> Installing existing package /packages/All/py311-cython3-3.0.11.pkg [133releng-armv7-default-job-08] Installing py311-cython3-3.0.11... [133releng-armv7-default-job-08] `-- Installing python311-3.11.9_1... [133releng-armv7-default-job-08] | `-- Installing gettext-runtime-0.22.5... [133releng-armv7-default-job-08] | | `-- Installing indexinfo-0.3.1... [133releng-armv7-default-job-08] | | `-- Extracting indexinfo-0.3.1: .... done [133releng-armv7-default-job-08] | `-- Extracting gettext-runtime-0.22.5: .......... done [133releng-armv7-default-job-08] | `-- Installing libffi-3.4.6... [133releng-armv7-default-job-08] | `-- Extracting libffi-3.4.6: .......... done [133releng-armv7-default-job-08] | `-- Installing mpdecimal-4.0.0... [133releng-armv7-default-job-08] | `-- Extracting mpdecimal-4.0.0: .......... done [133releng-armv7-default-job-08] | `-- Installing readline-8.2.10... [133releng-armv7-default-job-08] | `-- Extracting readline-8.2.10: .......... done [133releng-armv7-default-job-08] `-- Extracting python311-3.11.9_1: .......... done [133releng-armv7-default-job-08] Extracting py311-cython3-3.0.11: .......... done ===== Message from python311-3.11.9_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-pykdtree-1.3.12 depends on package: py311-cython3>=0 - found ===> Returning to build of py311-pykdtree-1.3.12 ===> py311-pykdtree-1.3.12 depends on package: py311-numpy>=0,1 - not found ===> Installing existing package /packages/All/py311-numpy-1.26.4_2,1.pkg [133releng-armv7-default-job-08] Installing py311-numpy-1.26.4_2,1... [133releng-armv7-default-job-08] `-- Installing gcc13-13.2.0_4... [133releng-armv7-default-job-08] | `-- Installing binutils-2.40_7,1... [133releng-armv7-default-job-08] | | `-- Installing zstd-1.5.6... [133releng-armv7-default-job-08] | | `-- Installing liblz4-1.10.0,1... [133releng-armv7-default-job-08] | | `-- Extracting liblz4-1.10.0,1: .......... done [133releng-armv7-default-job-08] | | `-- Extracting zstd-1.5.6: .......... done [133releng-armv7-default-job-08] | `-- Extracting binutils-2.40_7,1: .......... done [133releng-armv7-default-job-08] | `-- Installing gmp-6.3.0... [133releng-armv7-default-job-08] | `-- Extracting gmp-6.3.0: .......... done [133releng-armv7-default-job-08] | `-- Installing mpc-1.3.1_1... [133releng-armv7-default-job-08] | | `-- Installing mpfr-4.2.1,1... [133releng-armv7-default-job-08] | | `-- Extracting mpfr-4.2.1,1: .......... done [133releng-armv7-default-job-08] | `-- Extracting mpc-1.3.1_1: ......... done [133releng-armv7-default-job-08] `-- Extracting gcc13-13.2.0_4: .......... done [133releng-armv7-default-job-08] `-- Installing openblas-0.3.27,2... [133releng-armv7-default-job-08] `-- Extracting openblas-0.3.27,2: .......... done [133releng-armv7-default-job-08] `-- Installing py311-setuptools-63.1.0_1... [133releng-armv7-default-job-08] `-- Extracting py311-setuptools-63.1.0_1: .......... done [133releng-armv7-default-job-08] `-- Installing suitesparse-umfpack-6.3.3_1... [133releng-armv7-default-job-08] | `-- Installing suitesparse-amd-3.3.2... [133releng-armv7-default-job-08] | | `-- Installing suitesparse-config-7.7.0_1... [133releng-armv7-default-job-08] | | `-- Extracting suitesparse-config-7.7.0_1: .......... done [133releng-armv7-default-job-08] | `-- Extracting suitesparse-amd-3.3.2: .......... done [133releng-armv7-default-job-08] | `-- Installing suitesparse-camd-3.3.2... [133releng-armv7-default-job-08] | `-- Extracting suitesparse-camd-3.3.2: .......... done [133releng-armv7-default-job-08] | `-- Installing suitesparse-ccolamd-3.3.3... [133releng-armv7-default-job-08] | `-- Extracting suitesparse-ccolamd-3.3.3: .......... done [133releng-armv7-default-job-08] | `-- Installing suitesparse-cholmod-5.2.1_1... [133releng-armv7-default-job-08] | | `-- Installing suitesparse-colamd-3.3.3... [133releng-armv7-default-job-08] | | `-- Extracting suitesparse-colamd-3.3.3: .......... done [133releng-armv7-default-job-08] | `-- Extracting suitesparse-cholmod-5.2.1_1: .......... done [133releng-armv7-default-job-08] `-- Extracting suitesparse-umfpack-6.3.3_1: .......... done [133releng-armv7-default-job-08] Extracting py311-numpy-1.26.4_2,1: .......... done ===== Message from gcc13-13.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> py311-pykdtree-1.3.12 depends on package: py311-numpy>=0,1 - found ===> Returning to build of py311-pykdtree-1.3.12 ===> py311-pykdtree-1.3.12 depends on package: py311-setuptools>=0 - found ===> py311-pykdtree-1.3.12 depends on package: py311-wheel>=0 - not found ===> Installing existing package /packages/All/py311-wheel-0.44.0.pkg [133releng-armv7-default-job-08] Installing py311-wheel-0.44.0... [133releng-armv7-default-job-08] Extracting py311-wheel-0.44.0: .......... done ===> py311-pykdtree-1.3.12 depends on package: py311-wheel>=0 - found ===> Returning to build of py311-pykdtree-1.3.12 ===> py311-pykdtree-1.3.12 depends on file: /usr/local/bin/python3.11 - found ===> py311-pykdtree-1.3.12 depends on package: py311-build>=0 - not found ===> Installing existing package /packages/All/py311-build-1.2.1.pkg [133releng-armv7-default-job-08] Installing py311-build-1.2.1... [133releng-armv7-default-job-08] `-- Installing py311-packaging-24.1... [133releng-armv7-default-job-08] `-- Extracting py311-packaging-24.1: .......... done [133releng-armv7-default-job-08] `-- Installing py311-pyproject_hooks-1.1.0_1... [133releng-armv7-default-job-08] `-- Extracting py311-pyproject_hooks-1.1.0_1: .......... done [133releng-armv7-default-job-08] Extracting py311-build-1.2.1: .......... done ===> py311-pykdtree-1.3.12 depends on package: py311-build>=0 - found ===> Returning to build of py311-pykdtree-1.3.12 ===> py311-pykdtree-1.3.12 depends on package: py311-installer>=0 - not found ===> Installing existing package /packages/All/py311-installer-0.7.0.pkg [133releng-armv7-default-job-08] Installing py311-installer-0.7.0... [133releng-armv7-default-job-08] Extracting py311-installer-0.7.0: .......... done ===> py311-pykdtree-1.3.12 depends on package: py311-installer>=0 - found ===> Returning to build of py311-pykdtree-1.3.12 =========================================================================== =======================<phase: lib-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: configure >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py311-pykdtree-1.3.12 =========================================================================== =======================<phase: build >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py311-pykdtree-1.3.12 * Getting build dependencies for wheel... running egg_info writing pykdtree.egg-info/PKG-INFO writing dependency_links to pykdtree.egg-info/dependency_links.txt writing requirements to pykdtree.egg-info/requires.txt writing top-level names to pykdtree.egg-info/top_level.txt reading manifest file 'pykdtree.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'pykdtree/render_template.py' adding license file 'LICENSE.txt' writing manifest file 'pykdtree.egg-info/SOURCES.txt' * Building wheel... running bdist_wheel running build running build_py creating build creating build/lib.freebsd-13.3-RELEASE-p5-arm-cpython-311 creating build/lib.freebsd-13.3-RELEASE-p5-arm-cpython-311/pykdtree copying pykdtree/__init__.py -> build/lib.freebsd-13.3-RELEASE-p5-arm-cpython-311/pykdtree copying pykdtree/test_tree.py -> build/lib.freebsd-13.3-RELEASE-p5-arm-cpython-311/pykdtree running build_ext Will use gomp for OpenMP. Compiler: unix / OpenMP: gomp / OpenMP compile args: ['-fopenmp'] / OpenMP link args: ['-lgomp'] Compiling pykdtree/kdtree.pyx because it changed. [1/1] Cythonizing pykdtree/kdtree.pyx building 'pykdtree.kdtree' extension creating build/temp.freebsd-13.3-RELEASE-p5-arm-cpython-311 creating build/temp.freebsd-13.3-RELEASE-p5-arm-cpython-311/pykdtree cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c pykdtree/_kdtree_core.c -o build/temp.freebsd-13.3-RELEASE-p5-arm-cpython-311/pykdtree/_kdtree_core.o -std=c99 -O3 -fopenmp cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c pykdtree/kdtree.c -o build/temp.freebsd-13.3-RELEASE-p5-arm-cpython-311/pykdtree/kdtree.o -std=c99 -O3 -fopenmp pykdtree/kdtree.c:1271:10: fatal error: 'omp.h' file not found 1271 | #include <omp.h> | ^~~~~~~ 1 error generated. error: command '/usr/bin/cc' failed with exit code 1 ERROR Backend subprocess exited when trying to invoke build_wheel *** Error code 1 Stop. make: stopped in /usr/ports/devel/py-pykdtree