[package - 133releng-armv7-quarterly][biology/wfa2-lib] Failed for wfa2-lib-2.3.5 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Mon, 02 Sep 2024 07:30:39 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     jwb@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/ampere1/data/133releng-armv7-quarterly/0f0a0a2b20b4/logs/wfa2-lib-2.3.5.log
Build URL:      https://pkg-status.freebsd.org/ampere1/build.html?mastername=133releng-armv7-quarterly&build=0f0a0a2b20b4
Log:

=>> Building biology/wfa2-lib
build started at Mon Sep  2 07:30:16 UTC 2024
port directory: /usr/ports/biology/wfa2-lib
package name: wfa2-lib-2.3.5
building for: FreeBSD 133releng-armv7-quarterly-job-04 13.3-RELEASE-p5 FreeBSD 13.3-RELEASE-p5 1303001 arm
maintained by: jwb@FreeBSD.org
Makefile datestamp: -rw-r--r--  1 root  wheel  396 Jul 16 01:02 /usr/ports/biology/wfa2-lib/Makefile
Ports top last git commit: 0f0a0a2b2
Ports top unclean checkout: no
Port dir last git commit: e0c9a053f
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500019
Jail OSVERSION: 1303001
Job Id: 04

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PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work  XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work/.cache  HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/wfa2-lib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/wfa2-lib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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=======================<phase: check-sanity   >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   wfa2-lib-2.3.5 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.21.3.pkg
[133releng-armv7-quarterly-job-04] Installing pkg-1.21.3...
[133releng-armv7-quarterly-job-04] Extracting pkg-1.21.3: .......... done
===>   wfa2-lib-2.3.5 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of wfa2-lib-2.3.5
===========================================================================
=======================<phase: fetch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License MIT accepted by the user
===> Fetching all distfiles required by wfa2-lib-2.3.5 for building
===========================================================================
=======================<phase: checksum       >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License MIT accepted by the user
===> Fetching all distfiles required by wfa2-lib-2.3.5 for building
=> SHA256 Checksum OK for smarco-WFA2-lib-v2.3.5_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract        >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License MIT accepted by the user
===> Fetching all distfiles required by wfa2-lib-2.3.5 for building
===>  Extracting for wfa2-lib-2.3.5
=> SHA256 Checksum OK for smarco-WFA2-lib-v2.3.5_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Patching for wfa2-lib-2.3.5
===>  Applying FreeBSD patches for wfa2-lib-2.3.5 from /usr/ports/biology/wfa2-lib/files
===========================================================================
=======================<phase: build-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   wfa2-lib-2.3.5 depends on file: /usr/local/bin/cmake - not found
===>   Installing existing package /packages/All/cmake-core-3.29.6.pkg
[133releng-armv7-quarterly-job-04] Installing cmake-core-3.29.6...
[133releng-armv7-quarterly-job-04] `-- Installing expat-2.6.2...
[133releng-armv7-quarterly-job-04] `-- Extracting expat-2.6.2: .......... done
[133releng-armv7-quarterly-job-04] `-- Installing jsoncpp-1.9.5...
[133releng-armv7-quarterly-job-04] `-- Extracting jsoncpp-1.9.5: .......... done
[133releng-armv7-quarterly-job-04] `-- Installing libuv-1.48.0...
[133releng-armv7-quarterly-job-04] `-- Extracting libuv-1.48.0: .......... done
[133releng-armv7-quarterly-job-04] `-- Installing rhash-1.4.4_1...
[133releng-armv7-quarterly-job-04] |   `-- Installing gettext-runtime-0.22.5...
[133releng-armv7-quarterly-job-04] |   | `-- Installing indexinfo-0.3.1...
[133releng-armv7-quarterly-job-04] |   | `-- Extracting indexinfo-0.3.1: .... done
[133releng-armv7-quarterly-job-04] |   `-- Extracting gettext-runtime-0.22.5: .......... done
[133releng-armv7-quarterly-job-04] `-- Extracting rhash-1.4.4_1: .......... done
[133releng-armv7-quarterly-job-04] Extracting cmake-core-3.29.6: .......... done
===>   wfa2-lib-2.3.5 depends on file: /usr/local/bin/cmake - found
===>   Returning to build of wfa2-lib-2.3.5
===>   wfa2-lib-2.3.5 depends on executable: ninja - not found
<snip>
  717 |     align_status = wavefront_bialign_alignment(wf_aligner,
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |         &wf_aligner->alignment_form,
  719 |         affine_matrix_M,affine_matrix_M,
      |                         ^~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_bialign.c:719:9: warning: implicit conversion from enumeration type 'affine_matrix_type' to different enumeration type 'affine2p_matrix_type' [-Wenum-conversion]
  717 |     align_status = wavefront_bialign_alignment(wf_aligner,
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |         &wf_aligner->alignment_form,
  719 |         affine_matrix_M,affine_matrix_M,
      |         ^~~~~~~~~~~~~~~
4 warnings generated.
[ 41% 54/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront.c
[ 42% 55/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_components.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_components.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_components.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_components.c
[ 43% 56/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute_affine.c
[ 44% 57/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine2p.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine2p.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine2p.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute_affine2p.c
[ 45% 58/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_compute.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_compute.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_compute.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute.c
[ 45% 59/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_compute_linear.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_compute_linear.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_linear.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute_linear.c
[ 46% 60/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_debug.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_debug.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_debug.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_debug.c
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_debug.c:170:32: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
  170 |     fprintf(stream,"\t%luMB\t",CONVERT_B_TO_MB(memory_used));
      |                       ~~~      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                       %llu
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/./utils/commons.h:150:33: note: expanded from macro 'CONVERT_B_TO_MB'
  150 | #define CONVERT_B_TO_MB(number) ((number)/(1024*1024))
      |                                 ^~~~~~~~~~~~~~~~~~~~~~
1 warning generated.
[ 47% 61/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_compute_edit.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_compute_edit.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_edit.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute_edit.c
[ 48% 62/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_extend.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_extend.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_extend.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_extend.c
[ 49% 63/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_display.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_display.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_display.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_display.c
[ 50% 64/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_heuristic.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_heuristic.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_heuristic.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:176:5: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  176 | int wf_compute_distance_end2end(
      |     ^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:193:5: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  193 | int wf_compute_distance_end2end_weighted(
      |     ^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:212:5: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  212 | int wf_compute_distance_endsfree(
      |     ^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:257:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  257 | void wavefront_heuristic_wfadaptive(
      |      ^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:257:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:297:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  297 | void wf_heuristic_compute_sw_scores(
      |      ^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:329:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  329 | void wavefront_heuristic_xdrop(
      |      ^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:400:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning]
  400 | bool wavefront_heuristic_zdrop(
      |      ^
8 warnings generated.
[ 50% 65/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_penalties.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_penalties.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_penalties.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_penalties.c
[ 51% 66/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_pcigar.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_pcigar.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_pcigar.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_pcigar.c
[ 52% 67/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_plot.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_plot.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_plot.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_plot.c
[ 53% 68/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_sequences.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_sequences.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_sequences.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_sequences.c
[ 54% 69/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_slab.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_slab.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_slab.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_slab.c
[ 54% 70/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels_avx.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels_avx.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels_avx.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_extend_kernels_avx.c
[ 55% 71/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_termination.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_termination.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_termination.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_termination.c
[ 56% 72/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_unialign.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_unialign.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_unialign.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_unialign.c
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_unialign.c:321:7: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
  315 |       "MemoryUsed(WF-Slab,BT-buffer)=(%lu MB,%lu MB). "
      |                                       ~~~
      |                                       %llu
  316 |       "Wavefronts ~ %2.3f Moffsets\n",
  317 |       pattern_length,
  318 |       text_length,
  319 |       score,
  320 |       aligned_progress,
  321 |       CONVERT_B_TO_MB(slab_size),
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/./utils/commons.h:150:33: note: expanded from macro 'CONVERT_B_TO_MB'
  150 | #define CONVERT_B_TO_MB(number) ((number)/(1024*1024))
      |                                 ^~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_unialign.c:322:7: warning: format specifies type 'unsigned long' but the argument has type 'uint64_t' (aka 'unsigned long long') [-Wformat]
  315 |       "MemoryUsed(WF-Slab,BT-buffer)=(%lu MB,%lu MB). "
      |                                              ~~~
      |                                              %llu
  316 |       "Wavefronts ~ %2.3f Moffsets\n",
  317 |       pattern_length,
  318 |       text_length,
  319 |       score,
  320 |       aligned_progress,
  321 |       CONVERT_B_TO_MB(slab_size),
  322 |       CONVERT_B_TO_MB(bt_buffer_used),
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/./utils/commons.h:150:33: note: expanded from macro 'CONVERT_B_TO_MB'
  150 | #define CONVERT_B_TO_MB(number) ((number)/(1024*1024))
      |                                 ^~~~~~~~~~~~~~~~~~~~~~
2 warnings generated.
[ 57% 73/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_extend_kernels.c
[ 58% 74/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/system/mm_stack.c.o -MF CMakeFiles/wfa2.dir/system/mm_stack.c.o.d -o CMakeFiles/wfa2.dir/system/mm_stack.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/mm_stack.c
[ 58% 75/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/system/profiler_timer.c.o -MF CMakeFiles/wfa2.dir/system/profiler_timer.c.o.d -o CMakeFiles/wfa2.dir/system/profiler_timer.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/profiler_timer.c
[ 59% 76/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/system/mm_allocator.c.o -MF CMakeFiles/wfa2.dir/system/mm_allocator.c.o.d -o CMakeFiles/wfa2.dir/system/mm_allocator.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/mm_allocator.c
[ 60% 77/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/system/profiler_counter.c.o -MF CMakeFiles/wfa2.dir/system/profiler_counter.c.o.d -o CMakeFiles/wfa2.dir/system/profiler_counter.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/profiler_counter.c
[ 61% 78/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/dna_text.c.o -MF CMakeFiles/wfa2.dir/utils/dna_text.c.o.d -o CMakeFiles/wfa2.dir/utils/dna_text.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/dna_text.c
[ 62% 79/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/bitmap.c.o -MF CMakeFiles/wfa2.dir/utils/bitmap.c.o.d -o CMakeFiles/wfa2.dir/utils/bitmap.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/bitmap.c
[ 62% 80/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/sequence_buffer.c.o -MF CMakeFiles/wfa2.dir/utils/sequence_buffer.c.o.d -o CMakeFiles/wfa2.dir/utils/sequence_buffer.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/sequence_buffer.c
[ 63% 81/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/vector.c.o -MF CMakeFiles/wfa2.dir/utils/vector.c.o.d -o CMakeFiles/wfa2.dir/utils/vector.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/vector.c
[ 64% 82/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/commons.c.o -MF CMakeFiles/wfa2.dir/utils/commons.c.o.d -o CMakeFiles/wfa2.dir/utils/commons.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/commons.c
[ 65% 83/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/alignment/affine2p_penalties.c.o -MF CMakeFiles/wfa2.dir/alignment/affine2p_penalties.c.o.d -o CMakeFiles/wfa2.dir/alignment/affine2p_penalties.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/affine2p_penalties.c
[ 66% 84/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/alignment/affine_penalties.c.o -MF CMakeFiles/wfa2.dir/alignment/affine_penalties.c.o.d -o CMakeFiles/wfa2.dir/alignment/affine_penalties.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/affine_penalties.c
[ 66% 85/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/heatmap.c.o -MF CMakeFiles/wfa2.dir/utils/heatmap.c.o.d -o CMakeFiles/wfa2.dir/utils/heatmap.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/heatmap.c
[ 67% 86/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/alignment/score_matrix.c.o -MF CMakeFiles/wfa2.dir/alignment/score_matrix.c.o.d -o CMakeFiles/wfa2.dir/alignment/score_matrix.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/score_matrix.c
[ 68% 87/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/alignment/cigar.c.o -MF CMakeFiles/wfa2.dir/alignment/cigar.c.o.d -o CMakeFiles/wfa2.dir/alignment/cigar.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:50:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides]
   50 |   ['M'] = SAM_CIGAR_MATCH,
      |           ^~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:38:26: note: expanded from macro 'SAM_CIGAR_MATCH'
   38 | #define SAM_CIGAR_MATCH  0
      |                          ^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here
   49 |   [0 ... 255] = SAM_CIGAR_NA,
      |                 ^~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA'
   45 | #define SAM_CIGAR_NA    15
      |                         ^~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:51:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides]
   51 |   ['I'] = SAM_CIGAR_INS,
      |           ^~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:39:26: note: expanded from macro 'SAM_CIGAR_INS'
   39 | #define SAM_CIGAR_INS    1
      |                          ^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here
   49 |   [0 ... 255] = SAM_CIGAR_NA,
      |                 ^~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA'
   45 | #define SAM_CIGAR_NA    15
      |                         ^~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:52:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides]
   52 |   ['D'] = SAM_CIGAR_DEL,
      |           ^~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:40:26: note: expanded from macro 'SAM_CIGAR_DEL'
   40 | #define SAM_CIGAR_DEL    2
      |                          ^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here
   49 |   [0 ... 255] = SAM_CIGAR_NA,
      |                 ^~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA'
   45 | #define SAM_CIGAR_NA    15
      |                         ^~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:53:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides]
   53 |   ['N'] = SAM_CIGAR_N_SKIP,
      |           ^~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:41:26: note: expanded from macro 'SAM_CIGAR_N_SKIP'
   41 | #define SAM_CIGAR_N_SKIP 3
      |                          ^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here
   49 |   [0 ... 255] = SAM_CIGAR_NA,
      |                 ^~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA'
   45 | #define SAM_CIGAR_NA    15
      |                         ^~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:54:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides]
   54 |   ['='] = SAM_CIGAR_EQ,
      |           ^~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:42:26: note: expanded from macro 'SAM_CIGAR_EQ'
   42 | #define SAM_CIGAR_EQ     7
      |                          ^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here
   49 |   [0 ... 255] = SAM_CIGAR_NA,
      |                 ^~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA'
   45 | #define SAM_CIGAR_NA    15
      |                         ^~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:55:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides]
   55 |   ['X'] = SAM_CIGAR_X,
      |           ^~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:43:26: note: expanded from macro 'SAM_CIGAR_X'
   43 | #define SAM_CIGAR_X      8
      |                          ^
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here
   49 |   [0 ... 255] = SAM_CIGAR_NA,
      |                 ^~~~~~~~~~~~
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA'
   45 | #define SAM_CIGAR_NA    15
      |                         ^~
6 warnings generated.
[ 69% 88/124] : && /usr/bin/cc -fPIC -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG  -fstack-protector-strong -shared -Wl,-soname,libwfa2.so.0 -o libwfa2.so.0 CMakeFiles/wfa2.dir/wavefront/wavefront_align.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_aligner.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_attributes.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_buffer.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_offload.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_bialign.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_bialigner.c.o CMakeFiles/wfa2.dir/wavefront/wavefront.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_components.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine2p.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_compute.c.o CMakeFiles/wfa2.di
r/wavefront/wavefront_compute_edit.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_linear.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_debug.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_display.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_extend.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_heuristic.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_pcigar.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_penalties.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_plot.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_sequences.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_slab.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_unialign.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_termination.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels_avx.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels.c.o CMakeFiles/wfa2.dir/system/mm_stack.c.o CMakeFiles/wfa2.dir/system/mm_allocator.c.o CMakeFiles/wfa2.dir/system/profiler_counter.c.o CMakeFiles/wfa2.dir/system/profiler_timer.c.o CMakeFiles/wfa2.di
r/utils/bitmap.c.o CMakeFiles/wfa2.dir/utils/dna_text.c.o CMakeFiles/wfa2.dir/utils/sequence_buffer.c.o CMakeFiles/wfa2.dir/utils/vector.c.o CMakeFiles/wfa2.dir/utils/commons.c.o CMakeFiles/wfa2.dir/utils/heatmap.c.o CMakeFiles/wfa2.dir/alignment/affine2p_penalties.c.o CMakeFiles/wfa2.dir/alignment/affine_penalties.c.o CMakeFiles/wfa2.dir/alignment/cigar.c.o CMakeFiles/wfa2.dir/alignment/score_matrix.c.o   && :
[ 70% 89/124] /usr/local/bin/cmake -E cmake_symlink_library libwfa2.so.0 libwfa2.so.0 libwfa2.so && :
[ 70% 90/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark_params.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark_params.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark_params.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/align_benchmark_params.c
[ 71% 91/124] /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/align_benchmark.c
FAILED: CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark.c.o 
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/align_benchmark.c
/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/align_benchmark.c:32:10: fatal error: 'omp.h' file not found
   32 | #include <omp.h>
      |          ^~~~~~~
1 error generated.
[ 72% 91/124] /usr/bin/c++ -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing   -DNDEBUG -std=gnu++17 -fPIC -MD -MT CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o -MF CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o.d -o CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/bindings/cpp/WFAligner.cpp
[ 73% 91/124] /usr/bin/c++ -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2cpp_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing  -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing   -DNDEBUG -std=gnu++17 -fPIC -MD -MT CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o -MF CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o.d -o CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/bindings/cpp/WFAligner.cpp
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/wfa2-lib