[package - 133releng-armv7-quarterly][devel/py-pykdtree] Failed for py311-pykdtree-1.3.12 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Sun, 01 Sep 2024 16:44:46 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     sunpoet@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/ampere1/data/133releng-armv7-quarterly/0f0a0a2b20b4/logs/py311-pykdtree-1.3.12.log
Build URL:      https://pkg-status.freebsd.org/ampere1/build.html?mastername=133releng-armv7-quarterly&build=0f0a0a2b20b4
Log:

=>> Building devel/py-pykdtree
build started at Sun Sep  1 16:44:15 UTC 2024
port directory: /usr/ports/devel/py-pykdtree
package name: py311-pykdtree-1.3.12
building for: FreeBSD 133releng-armv7-quarterly-job-02 13.3-RELEASE-p5 FreeBSD 13.3-RELEASE-p5 1303001 arm
maintained by: sunpoet@FreeBSD.org
Makefile datestamp: -rw-r--r--  1 root  wheel  848 Jul 16 01:02 /usr/ports/devel/py-pykdtree/Makefile
Ports top last git commit: 0f0a0a2b2
Ports top unclean checkout: no
Port dir last git commit: e0c9a053f
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500019
Jail OSVERSION: 1303001
Job Id: 02

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sunpoet@FreeBSD.org
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=======================<phase: check-sanity   >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License LGPL3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py311-pykdtree-1.3.12 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.21.3.pkg
[133releng-armv7-quarterly-job-02] Installing pkg-1.21.3...
[133releng-armv7-quarterly-job-02] Extracting pkg-1.21.3: .......... done
===>   py311-pykdtree-1.3.12 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py311-pykdtree-1.3.12
===========================================================================
=======================<phase: fetch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License LGPL3 accepted by the user
===> Fetching all distfiles required by py311-pykdtree-1.3.12 for building
===========================================================================
=======================<phase: checksum       >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License LGPL3 accepted by the user
===> Fetching all distfiles required by py311-pykdtree-1.3.12 for building
=> SHA256 Checksum OK for pykdtree-1.3.12.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract        >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License LGPL3 accepted by the user
===> Fetching all distfiles required by py311-pykdtree-1.3.12 for building
===>  Extracting for py311-pykdtree-1.3.12
=> SHA256 Checksum OK for pykdtree-1.3.12.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Patching for py311-pykdtree-1.3.12
===>  Applying FreeBSD patches for py311-pykdtree-1.3.12 from /usr/ports/devel/py-pykdtree/files
===========================================================================
=======================<phase: build-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py311-pykdtree-1.3.12 depends on package: py311-cython3>=0 - not found
===>   Installing existing package /packages/All/py311-cython3-3.0.10.pkg
[133releng-armv7-quarterly-job-02] Installing py311-cython3-3.0.10...
[133releng-armv7-quarterly-job-02] `-- Installing python311-3.11.9...
[133releng-armv7-quarterly-job-02] |   `-- Installing gettext-runtime-0.22.5...
[133releng-armv7-quarterly-job-02] |   | `-- Installing indexinfo-0.3.1...
[133releng-armv7-quarterly-job-02] |   | `-- Extracting indexinfo-0.3.1: .... done
[133releng-armv7-quarterly-job-02] |   `-- Extracting gettext-runtime-0.22.5: .......... done
[133releng-armv7-quarterly-job-02] |   `-- Installing libffi-3.4.6...
[133releng-armv7-quarterly-job-02] |   `-- Extracting libffi-3.4.6: .......... done
[133releng-armv7-quarterly-job-02] |   `-- Installing mpdecimal-4.0.0...
[133releng-armv7-quarterly-job-02] |   `-- Extracting mpdecimal-4.0.0: .......... done
[133releng-armv7-quarterly-job-02] |   `-- Installing readline-8.2.10...
[133releng-armv7-quarterly-job-02] |   `-- Extracting readline-8.2.10: .......... done
[133releng-armv7-quarterly-job-02] `-- Extracting python311-3.11.9: .......... done
[133releng-armv7-quarterly-job-02] Extracting py311-cython3-3.0.10: .......... done
=====
Message from python311-3.11.9:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py311-gdbm       databases/py-gdbm@py311
py311-sqlite3    databases/py-sqlite3@py311
py311-tkinter    x11-toolkits/py-tkinter@py311
===>   py311-pykdtree-1.3.12 depends on package: py311-cython3>=0 - found
===>   Returning to build of py311-pykdtree-1.3.12
===>   py311-pykdtree-1.3.12 depends on package: py311-numpy>=0,1 - not found
===>   Installing existing package /packages/All/py311-numpy-1.26.4_1,1.pkg
[133releng-armv7-quarterly-job-02] Installing py311-numpy-1.26.4_1,1...
[133releng-armv7-quarterly-job-02] `-- Installing gcc13-13.2.0_4...
[133releng-armv7-quarterly-job-02] |   `-- Installing binutils-2.40_6,1...
[133releng-armv7-quarterly-job-02] |   | `-- Installing zstd-1.5.6...
[133releng-armv7-quarterly-job-02] |   |   `-- Installing liblz4-1.9.4_1,1...
[133releng-armv7-quarterly-job-02] |   |   `-- Extracting liblz4-1.9.4_1,1: .......... done
[133releng-armv7-quarterly-job-02] |   | `-- Extracting zstd-1.5.6: .......... done
[133releng-armv7-quarterly-job-02] |   `-- Extracting binutils-2.40_6,1: .......... done
[133releng-armv7-quarterly-job-02] |   `-- Installing gmp-6.3.0...
[133releng-armv7-quarterly-job-02] |   `-- Extracting gmp-6.3.0: .......... done
[133releng-armv7-quarterly-job-02] |   `-- Installing mpc-1.3.1_1...
[133releng-armv7-quarterly-job-02] |   | `-- Installing mpfr-4.2.1,1...
[133releng-armv7-quarterly-job-02] |   | `-- Extracting mpfr-4.2.1,1: .......... done
[133releng-armv7-quarterly-job-02] |   `-- Extracting mpc-1.3.1_1: ......... done
[133releng-armv7-quarterly-job-02] `-- Extracting gcc13-13.2.0_4: .......... done
[133releng-armv7-quarterly-job-02] `-- Installing openblas-0.3.27,2...
[133releng-armv7-quarterly-job-02] `-- Extracting openblas-0.3.27,2: .......... done
[133releng-armv7-quarterly-job-02] `-- Installing py311-setuptools-63.1.0_1...
[133releng-armv7-quarterly-job-02] `-- Extracting py311-setuptools-63.1.0_1: .......... done
[133releng-armv7-quarterly-job-02] `-- Installing suitesparse-umfpack-6.3.3_1...
[133releng-armv7-quarterly-job-02] |   `-- Installing suitesparse-amd-3.3.2...
[133releng-armv7-quarterly-job-02] |   | `-- Installing suitesparse-config-7.7.0_1...
[133releng-armv7-quarterly-job-02] |   | `-- Extracting suitesparse-config-7.7.0_1: .......... done
[133releng-armv7-quarterly-job-02] |   `-- Extracting suitesparse-amd-3.3.2: .......... done
[133releng-armv7-quarterly-job-02] |   `-- Installing suitesparse-camd-3.3.2...
[133releng-armv7-quarterly-job-02] |   `-- Extracting suitesparse-camd-3.3.2: .......... done
[133releng-armv7-quarterly-job-02] |   `-- Installing suitesparse-ccolamd-3.3.3...
[133releng-armv7-quarterly-job-02] |   `-- Extracting suitesparse-ccolamd-3.3.3: .......... done
[133releng-armv7-quarterly-job-02] |   `-- Installing suitesparse-cholmod-5.2.1_1...
[133releng-armv7-quarterly-job-02] |   | `-- Installing suitesparse-colamd-3.3.3...
[133releng-armv7-quarterly-job-02] |   | `-- Extracting suitesparse-colamd-3.3.3: .......... done
[133releng-armv7-quarterly-job-02] |   `-- Extracting suitesparse-cholmod-5.2.1_1: .......... done
[133releng-armv7-quarterly-job-02] `-- Extracting suitesparse-umfpack-6.3.3_1: .......... done
[133releng-armv7-quarterly-job-02] Extracting py311-numpy-1.26.4_1,1: .......... done
=====
Message from gcc13-13.2.0_4:

--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc13

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===>   py311-pykdtree-1.3.12 depends on package: py311-numpy>=0,1 - found
===>   Returning to build of py311-pykdtree-1.3.12
===>   py311-pykdtree-1.3.12 depends on package: py311-setuptools>=0 - found
===>   py311-pykdtree-1.3.12 depends on package: py311-wheel>=0 - not found
===>   Installing existing package /packages/All/py311-wheel-0.43.0.pkg
[133releng-armv7-quarterly-job-02] Installing py311-wheel-0.43.0...
[133releng-armv7-quarterly-job-02] Extracting py311-wheel-0.43.0: .......... done
===>   py311-pykdtree-1.3.12 depends on package: py311-wheel>=0 - found
===>   Returning to build of py311-pykdtree-1.3.12
===>   py311-pykdtree-1.3.12 depends on file: /usr/local/bin/python3.11 - found
===>   py311-pykdtree-1.3.12 depends on package: py311-build>=0 - not found
===>   Installing existing package /packages/All/py311-build-1.2.1.pkg
[133releng-armv7-quarterly-job-02] Installing py311-build-1.2.1...
[133releng-armv7-quarterly-job-02] `-- Installing py311-packaging-24.1...
[133releng-armv7-quarterly-job-02] `-- Extracting py311-packaging-24.1: .......... done
[133releng-armv7-quarterly-job-02] `-- Installing py311-pyproject_hooks-1.1.0...
[133releng-armv7-quarterly-job-02] `-- Extracting py311-pyproject_hooks-1.1.0: .......... done
[133releng-armv7-quarterly-job-02] Extracting py311-build-1.2.1: .......... done
===>   py311-pykdtree-1.3.12 depends on package: py311-build>=0 - found
===>   Returning to build of py311-pykdtree-1.3.12
===>   py311-pykdtree-1.3.12 depends on package: py311-installer>=0 - not found
===>   Installing existing package /packages/All/py311-installer-0.7.0.pkg
[133releng-armv7-quarterly-job-02] Installing py311-installer-0.7.0...
[133releng-armv7-quarterly-job-02] Extracting py311-installer-0.7.0: .......... done
===>   py311-pykdtree-1.3.12 depends on package: py311-installer>=0 - found
===>   Returning to build of py311-pykdtree-1.3.12
===========================================================================
=======================<phase: lib-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure      >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Configuring for py311-pykdtree-1.3.12
===========================================================================
=======================<phase: build          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Building for py311-pykdtree-1.3.12
* Getting build dependencies for wheel...
running egg_info
writing pykdtree.egg-info/PKG-INFO
writing dependency_links to pykdtree.egg-info/dependency_links.txt
writing requirements to pykdtree.egg-info/requires.txt
writing top-level names to pykdtree.egg-info/top_level.txt
reading manifest file 'pykdtree.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching 'pykdtree/render_template.py'
adding license file 'LICENSE.txt'
writing manifest file 'pykdtree.egg-info/SOURCES.txt'
* Building wheel...
running bdist_wheel
running build
running build_py
creating build
creating build/lib.freebsd-13.3-RELEASE-p5-arm-cpython-311
creating build/lib.freebsd-13.3-RELEASE-p5-arm-cpython-311/pykdtree
copying pykdtree/__init__.py -> build/lib.freebsd-13.3-RELEASE-p5-arm-cpython-311/pykdtree
copying pykdtree/test_tree.py -> build/lib.freebsd-13.3-RELEASE-p5-arm-cpython-311/pykdtree
running build_ext
Will use gomp for OpenMP.
Compiler: unix / OpenMP: gomp / OpenMP compile args: ['-fopenmp'] / OpenMP link args: ['-lgomp']
Compiling pykdtree/kdtree.pyx because it changed.
[1/1] Cythonizing pykdtree/kdtree.pyx
building 'pykdtree.kdtree' extension
creating build/temp.freebsd-13.3-RELEASE-p5-arm-cpython-311
creating build/temp.freebsd-13.3-RELEASE-p5-arm-cpython-311/pykdtree
cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c pykdtree/_kdtree_core.c -o build/temp.freebsd-13.3-RELEASE-p5-arm-cpython-311/pykdtree/_kdtree_core.o -std=c99 -O3 -fopenmp
cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c pykdtree/kdtree.c -o build/temp.freebsd-13.3-RELEASE-p5-arm-cpython-311/pykdtree/kdtree.o -std=c99 -O3 -fopenmp
pykdtree/kdtree.c:1271:10: fatal error: 'omp.h' file not found
 1271 | #include <omp.h>
      |          ^~~~~~~
1 error generated.
error: command '/usr/bin/cc' failed with exit code 1

ERROR Backend subprocess exited when trying to invoke build_wheel
*** Error code 1

Stop.
make: stopped in /usr/ports/devel/py-pykdtree