[package - main-armv7-default][biology/htslib] Failed for htslib-1.21 in build
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Date: Tue, 22 Oct 2024 11:35:30 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/p94c4ac6b071b_sc87b3f0006/logs/htslib-1.21.log
Build URL: https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=p94c4ac6b071b_sc87b3f0006
Log:
=>> Building biology/htslib
build started at Tue Oct 22 11:34:44 UTC 2024
port directory: /usr/ports/biology/htslib
package name: htslib-1.21
building for: FreeBSD main-armv7-default-job-10 15.0-CURRENT FreeBSD 15.0-CURRENT 1500025 arm
maintained by: jwb@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1098 Oct 15 01:04 /usr/ports/biology/htslib/Makefile
Ports top last git commit: 94c4ac6b071
Ports top unclean checkout: no
Port dir last git commit: aafe5d31c5f
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500023
Jail OSVERSION: 1500025
Job Id: 10
!!! Jail is newer than host. (Jail: 1500025, Host: 1500023) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
OSVERSION=1500025
UNAME_v=FreeBSD 15.0-CURRENT 1500025
UNAME_r=15.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.2
MASTERMNT=/usr/local/poudriere/data/.m/main-armv7-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/main-armv7-default/10/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=main-armv7-default
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.2
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for htslib-1.21:
CURL=on: Use libcurl for network file access (HTTPS and S3 support).
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
jwb@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--enable-libcurl --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/htslib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/htslib/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/htslib/work/.cache HOME=/wrkdirs/usr/ports/biology/htslib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/htslib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/htslib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh DEFAULT_AUTOCONF=2.72 CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--
--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 OPENSSLBASE=/usr OPENSSLDIR=/etc/ssl OPENSSLINC=/usr/include OPENSSLLIB=/usr/lib XDG_DATA_HOME=/wrkdirs/usr/ports/biology/htslib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/htslib/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/htslib/work/.cache HOME=/wrkdirs/usr/ports/biology/htslib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/htslib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/htslib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DEFAULT_AUTOCONF=2.72 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protec
tor-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTVERSION="1.21" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/htslib" EXAMPLESDIR="share/examples/htslib" DATADIR="share/htslib" WWWDIR="www/htslib" ETCDIR="etc/htslib"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/htslib DOCSDIR=/usr/local/share/doc/htslib EXAMPLESDIR=/usr/local/share/examples/htslib WWWDIR=/usr/local/www/htslib ETCDIR=/usr/local/etc/htslib
--End SUB_LIST--
---Begin make.conf---
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
ulimit: can't get limit: Invalid argument
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> htslib-1.21 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[main-armv7-default-job-10] Installing pkg-1.21.3...
[main-armv7-default-job-10] Extracting pkg-1.21.3: .......... done
===> htslib-1.21 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of htslib-1.21
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE MIT accepted by the user
===> Fetching all distfiles required by htslib-1.21 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE MIT accepted by the user
===> Fetching all distfiles required by htslib-1.21 for building
=> SHA256 Checksum OK for htslib-1.21.tar.bz2.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE MIT accepted by the user
===> Fetching all distfiles required by htslib-1.21 for building
===> Extracting for htslib-1.21
=> SHA256 Checksum OK for htslib-1.21.tar.bz2.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for htslib-1.21
===> Applying FreeBSD patches for htslib-1.21 from /usr/ports/biology/htslib/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> htslib-1.21 depends on package: gmake>=4.4.1 - not found
===> Installing existing package /packages/All/gmake-4.4.1.pkg
[main-armv7-default-job-10] Installing gmake-4.4.1...
[main-armv7-default-job-10] `-- Installing gettext-runtime-0.22.5...
[main-armv7-default-job-10] | `-- Installing indexinfo-0.3.1...
<snip>
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o realn.o realn.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o regidx.o regidx.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o region.o region.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o sam.o sam.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o sam_mods.o sam_mods.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o simd.o simd.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o synced_bcf_reader.o synced_bcf_reader.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o vcf_sweep.o vcf_sweep.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o tbx.o tbx.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o textutils.o textutils.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o thread_pool.o thread_pool.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o vcf.o vcf.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o vcfutils.o vcfutils.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/cram_codecs.o cram/cram_codecs.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/cram_decode.o cram/cram_decode.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/cram_encode.o cram/cram_encode.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/cram_external.o cram/cram_external.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/cram_index.o cram/cram_index.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/cram_io.o cram/cram_io.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/cram_stats.o cram/cram_stats.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/mFILE.o cram/mFILE.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/open_trace_file.o cram/open_trace_file.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/pooled_alloc.o cram/pooled_alloc.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o cram/string_alloc.o cram/string_alloc.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx2.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_avx512.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_sse4.c
cc -Wall -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fvisibility=hidden -I. -isystem /usr/local/include -c -o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr_neon.c
htscodecs/htscodecs/rANS_static4x16pr.c:1073:19: error: use of undeclared identifier 'rans_compress_O1_32x16_neon'; did you mean 'rans_compress_O1_32x16'?
1073 | ? rans_compress_O1_32x16_neon
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
| rans_compress_O1_32x16
htscodecs/htscodecs/rANS_static32x16pr.h:70:16: note: 'rans_compress_O1_32x16' declared here
70 | unsigned char *rans_compress_O1_32x16(unsigned char *in,
| ^
htscodecs/htscodecs/rANS_static4x16pr.c:1074:19: error: use of undeclared identifier 'rans_compress_O0_32x16_neon'; did you mean 'rans_compress_O0_32x16'?
1074 | : rans_compress_O0_32x16_neon;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
| rans_compress_O0_32x16
htscodecs/htscodecs/rANS_static32x16pr.h:60:16: note: 'rans_compress_O0_32x16' declared here
60 | unsigned char *rans_compress_O0_32x16(unsigned char *in,
| ^
htscodecs/htscodecs/rANS_static4x16pr.c:1096:19: error: use of undeclared identifier 'rans_uncompress_O1_32x16_neon'; did you mean 'rans_uncompress_O1_32x16'?
1096 | ? rans_uncompress_O1_32x16_neon
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| rans_uncompress_O1_32x16
htscodecs/htscodecs/rANS_static32x16pr.h:75:16: note: 'rans_uncompress_O1_32x16' declared here
75 | unsigned char *rans_uncompress_O1_32x16(unsigned char *in,
| ^
htscodecs/htscodecs/rANS_static4x16pr.c:1097:19: error: use of undeclared identifier 'rans_uncompress_O0_32x16_neon'; did you mean 'rans_uncompress_O0_32x16'?
1097 | : rans_uncompress_O0_32x16_neon;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| rans_uncompress_O0_32x16
htscodecs/htscodecs/rANS_static32x16pr.h:65:16: note: 'rans_uncompress_O0_32x16' declared here
65 | unsigned char *rans_uncompress_O0_32x16(unsigned char *in,
| ^
4 errors generated.
gmake: *** [Makefile:194: htscodecs/htscodecs/rANS_static4x16pr.o] Error 1
gmake: *** Waiting for unfinished jobs....
htscodecs/htscodecs/rANS_static32x16pr_neon.c:200:31: warning: call to undeclared function 'vtrn1q_u32'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
200 | uint32x4_t A1_1 = vtrn1q_u32(A_1, B_1);
| ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:200:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
200 | uint32x4_t A1_1 = vtrn1q_u32(A_1, B_1);
| ^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:201:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
201 | uint32x4_t C1_1 = vtrn1q_u32(C_1, D_1);
| ^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:202:31: warning: call to undeclared function 'vtrn2q_u32'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
202 | uint32x4_t A2_1 = vtrn2q_u32(A_1, B_1);
| ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:202:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
202 | uint32x4_t A2_1 = vtrn2q_u32(A_1, B_1);
| ^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:203:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
203 | uint32x4_t C2_1 = vtrn2q_u32(C_1, D_1);
| ^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:207:39: warning: call to undeclared function 'vtrn1q_u64'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
207 | uint32x4_t Xmaxv1=u32_u64(vtrn1q_u64(u64_u32(A1_1),u64_u32(C1_1)));
| ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:207:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
207 | uint32x4_t Xmaxv1=u32_u64(vtrn1q_u64(u64_u32(A1_1),u64_u32(C1_1)));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
205 | #define u32_u64(x) vreinterpretq_u32_u64((x))
| ^~~
/usr/lib/clang/18/include/arm_neon.h:37932:50: note: passing argument to parameter '__p0' here
37932 | __ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
| ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:208:39: warning: call to undeclared function 'vtrn2q_u64'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
208 | uint32x4_t Biasv1=u32_u64(vtrn2q_u64(u64_u32(A1_1),u64_u32(C1_1)));
| ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:208:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
208 | uint32x4_t Biasv1=u32_u64(vtrn2q_u64(u64_u32(A1_1),u64_u32(C1_1)));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
205 | #define u32_u64(x) vreinterpretq_u32_u64((x))
| ^~~
/usr/lib/clang/18/include/arm_neon.h:37932:50: note: passing argument to parameter '__p0' here
37932 | __ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
| ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:209:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
209 | uint32x4_t RFv1 =u32_u64(vtrn1q_u64(u64_u32(A2_1),u64_u32(C2_1)));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
205 | #define u32_u64(x) vreinterpretq_u32_u64((x))
| ^~~
/usr/lib/clang/18/include/arm_neon.h:37932:50: note: passing argument to parameter '__p0' here
37932 | __ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
| ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:210:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
210 | uint32x4_t FSv1 =u32_u64(vtrn2q_u64(u64_u32(A2_1),u64_u32(C2_1)));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
205 | #define u32_u64(x) vreinterpretq_u32_u64((x))
| ^~~
/usr/lib/clang/18/include/arm_neon.h:37932:50: note: passing argument to parameter '__p0' here
37932 | __ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
| ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:217:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
217 | uint32x4_t A1_2 = vtrn1q_u32(A_2, B_2);
| ^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:218:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
218 | uint32x4_t C1_2 = vtrn1q_u32(C_2, D_2);
| ^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:219:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
219 | uint32x4_t A2_2 = vtrn2q_u32(A_2, B_2);
| ^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:220:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
220 | uint32x4_t C2_2 = vtrn2q_u32(C_2, D_2);
| ^ ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:222:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
222 | uint32x4_t Xmaxv2=u32_u64(vtrn1q_u64(u64_u32(A1_2),u64_u32(C1_2)));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
205 | #define u32_u64(x) vreinterpretq_u32_u64((x))
| ^~~
/usr/lib/clang/18/include/arm_neon.h:37932:50: note: passing argument to parameter '__p0' here
37932 | __ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
| ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:223:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
223 | uint32x4_t Biasv2=u32_u64(vtrn2q_u64(u64_u32(A1_2),u64_u32(C1_2)));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
205 | #define u32_u64(x) vreinterpretq_u32_u64((x))
| ^~~
/usr/lib/clang/18/include/arm_neon.h:37932:50: note: passing argument to parameter '__p0' here
37932 | __ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
| ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:224:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
224 | uint32x4_t RFv2 =u32_u64(vtrn1q_u64(u64_u32(A2_2),u64_u32(C2_2)));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
205 | #define u32_u64(x) vreinterpretq_u32_u64((x))
| ^~~
/usr/lib/clang/18/include/arm_neon.h:37932:50: note: passing argument to parameter '__p0' here
37932 | __ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
| ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:225:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
225 | uint32x4_t FSv2 =u32_u64(vtrn2q_u64(u64_u32(A2_2),u64_u32(C2_2)));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:205:42: note: expanded from macro 'u32_u64'
205 | #define u32_u64(x) vreinterpretq_u32_u64((x))
| ^~~
/usr/lib/clang/18/include/arm_neon.h:37932:50: note: passing argument to parameter '__p0' here
37932 | __ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
| ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:232:31: warning: call to undeclared function 'vaddvq_u32'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
232 | uint32_t imask1 = vaddvq_u32(vandq_u32(Cv1, bit));
| ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:237:21: warning: call to undeclared function 'vqtbl1_u8'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
237 | norm1 = vqtbl1_u8(vreinterpretq_u8_u32(Rv1),vtab[imask1]);
| ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:237:19: error: assigning to 'uint8x8_t' (vector of 8 'uint8_t' values) from incompatible type 'int'
237 | norm1 = vqtbl1_u8(vreinterpretq_u8_u32(Rv1),vtab[imask1]);
| ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:238:19: error: assigning to 'uint8x8_t' (vector of 8 'uint8_t' values) from incompatible type 'int'
238 | norm2 = vqtbl1_u8(vreinterpretq_u8_u32(Rv2),vtab[imask2]);
| ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:264:31: warning: call to undeclared function 'vmull_high_u32'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
264 | uint64x2_t qvh1 = vmull_high_u32(Rv1, RFv1);
| ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:264:24: error: initializing 'uint64x2_t' (vector of 2 'uint64_t' values) with an expression of incompatible type 'int'
264 | uint64x2_t qvh1 = vmull_high_u32(Rv1, RFv1);
| ^ ~~~~~~~~~~~~~~~~~~~~~~~~~
fatal error: too many errors emitted, stopping now [-ferror-limit=]
7 warnings and 20 errors generated.
gmake: *** [Makefile:194: htscodecs/htscodecs/rANS_static32x16pr_neon.o] Error 1
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped making "build" in /usr/ports/biology/htslib