[package - 133amd64-default][science/bout++-merging-filaments] Failed for bout++-merging-filaments-g20200812_1 in build
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Date: Thu, 03 Oct 2024 18:31:23 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy16/data/133amd64-default/1f84c1fae602/logs/bout++-merging-filaments-g20200812_1.log
Build URL: https://pkg-status.freebsd.org/beefy16/build.html?mastername=133amd64-default&build=1f84c1fae602
Log:
=>> Building science/bout++-merging-filaments
build started at Thu Oct 3 18:30:38 UTC 2024
port directory: /usr/ports/science/bout++-merging-filaments
package name: bout++-merging-filaments-g20200812_1
building for: FreeBSD 133amd64-default-job-01 13.3-RELEASE-p7 FreeBSD 13.3-RELEASE-p7 amd64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 785 Apr 25 2023 /usr/ports/science/bout++-merging-filaments/Makefile
Ports top last git commit: 1f84c1fae60
Ports top unclean checkout: no
Port dir last git commit: 8d3e020ed03
Port dir unclean checkout: no
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Job Id: 01
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#### ####
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=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> bout++-merging-filaments-g20200812_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[133amd64-default-job-01] Installing pkg-1.21.3...
[133amd64-default-job-01] Extracting pkg-1.21.3: .......... done
===> bout++-merging-filaments-g20200812_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of bout++-merging-filaments-g20200812_1
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by bout++-merging-filaments-g20200812_1 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by bout++-merging-filaments-g20200812_1 for building
=> SHA256 Checksum OK for boutproject-merging-filaments-g20200812-ee5a7b9_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by bout++-merging-filaments-g20200812_1 for building
===> Extracting for bout++-merging-filaments-g20200812_1
=> SHA256 Checksum OK for boutproject-merging-filaments-g20200812-ee5a7b9_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for bout++-merging-filaments-g20200812_1
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> bout++-merging-filaments-g20200812_1 depends on executable: gmake - not found
===> Installing existing package /packages/All/gmake-4.4.1.pkg
[133amd64-default-job-01] Installing gmake-4.4.1...
[133amd64-default-job-01] `-- Installing gettext-runtime-0.22.5...
[133amd64-default-job-01] | `-- Installing indexinfo-0.3.1...
[133amd64-default-job-01] | `-- Extracting indexinfo-0.3.1: .... done
[133amd64-default-job-01] `-- Extracting gettext-runtime-0.22.5: .......... done
[133amd64-default-job-01] Extracting gmake-4.4.1: .......... done
===> bout++-merging-filaments-g20200812_1 depends on executable: gmake - found
===> Returning to build of bout++-merging-filaments-g20200812_1
===> bout++-merging-filaments-g20200812_1 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.30.4.pkg
[133amd64-default-job-01] Installing cmake-core-3.30.4...
[133amd64-default-job-01] `-- Installing expat-2.6.3...
[133amd64-default-job-01] `-- Extracting expat-2.6.3: .......... done
[133amd64-default-job-01] `-- Installing jsoncpp-1.9.6_1...
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[133amd64-default-job-01] `-- Installing libuv-1.49.0...
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[133amd64-default-job-01] `-- Extracting rhash-1.4.4_1: .......... done
[133amd64-default-job-01] Extracting cmake-core-3.30.4: .......... done
===> bout++-merging-filaments-g20200812_1 depends on file: /usr/local/bin/cmake - found
===> Returning to build of bout++-merging-filaments-g20200812_1
===> bout++-merging-filaments-g20200812_1 depends on executable: ninja - not found
===> Installing existing package /packages/All/ninja-1.11.1,4.pkg
[133amd64-default-job-01] Installing ninja-1.11.1,4...
<snip>
[133amd64-default-job-01] | `-- Extracting py311-python-dateutil-2.9.0: .......... done
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[133amd64-default-job-01] | `-- Installing qhull-8.0.2_3,1...
[133amd64-default-job-01] | `-- Extracting qhull-8.0.2_3,1: .......... done
[133amd64-default-job-01] `-- Extracting py311-matplotlib-3.8.0_1: .......... done
[133amd64-default-job-01] `-- Installing py311-natsort-8.4.0...
[133amd64-default-job-01] `-- Extracting py311-natsort-8.4.0: .......... done
[133amd64-default-job-01] `-- Installing py311-netCDF4-1.6.5...
[133amd64-default-job-01] | `-- Installing py311-cftime-1.6.4...
[133amd64-default-job-01] | `-- Extracting py311-cftime-1.6.4: .......... done
[133amd64-default-job-01] | `-- Installing py311-cython-0.29.37_1...
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[133amd64-default-job-01] `-- Extracting py311-netCDF4-1.6.5: .......... done
[133amd64-default-job-01] `-- Installing py311-scipy-1.11.1_1,1...
[133amd64-default-job-01] | `-- Installing blas-3.12.0_1...
[133amd64-default-job-01] | `-- Extracting blas-3.12.0_1: ........ done
[133amd64-default-job-01] `-- Extracting py311-scipy-1.11.1_1,1: .......... done
[133amd64-default-job-01] `-- Installing py311-sympy-1.11.1_2...
[133amd64-default-job-01] | `-- Installing py311-mpmath-1.3.0_1...
[133amd64-default-job-01] | | `-- Installing py311-gmpy2-2.2.1...
[133amd64-default-job-01] | | `-- Extracting py311-gmpy2-2.2.1: .......... done
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[133amd64-default-job-01] `-- Extracting py311-sympy-1.11.1_2: .......... done
[133amd64-default-job-01] Extracting bout++-5.1.1: .......... done
==> Running trigger: fontconfig.ucl
Running fc-cache to build fontconfig cache...
==> Running trigger: gio-modules.ucl
Generating GIO modules cache
==> Running trigger: glib-schemas.ucl
Compiling glib schemas
No schema files found: doing nothing.
=====
Message from gcc13-13.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc13
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from freetype2-2.13.3:
--
The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as
the default, emulating a modern version of ClearType. This change inevitably
leads to different rendering results, and you might change port's options to
adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment
variable).
The environment variable "FREETYPE_PROPERTIES" can be used to control the
driver properties. Example:
FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
cff:no-stem-darkening=1 \
autofitter:warping=1
This allows to select, say, the subpixel hinting mode at runtime for a given
application.
If LONG_PCF_NAMES port's option was enabled, the PCF family names may include
the foundry and information whether they contain wide characters. For example,
"Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at
run time with using pcf:no-long-family-names property, if needed. Example:
FREETYPE_PROPERTIES=pcf:no-long-family-names=1
How to recreate fontconfig cache with using such environment variable,
if needed:
# env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv
The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed).
=====
Message from bout++-5.1.1:
--
You installed BOUT++, plasma fluid finite-difference simulation code.
BOUT++ is a framework that allows to solve a variety of partial differential
equations, with or without physical meaning.
You can use BOUT++ in one of these ways:
1. Build with included examples: make WITH_EXAMPLES=yes
These examples showcase what BOUT++ can do on simple PDE systems,
2. Build and run any of the dependent ports: science/bout++-*
3. Write your own BOUT++ applications solving your equations.
===> bout++-merging-filaments-g20200812_1 depends on shared library: libbout++.so - found (/usr/local/lib/libbout++.so)
===> Returning to build of bout++-merging-filaments-g20200812_1
===> bout++-merging-filaments-g20200812_1 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so)
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for bout++-merging-filaments-g20200812_1
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/bout++-merging-filaments/work/.build
-- The CXX compiler identification is Clang 17.0.6
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found MPI_CXX: /usr/local/lib/libmpicxx.so (found suitable exact version "4.1")
-- Found MPI: TRUE (found suitable exact version "4.1")
-- Found netCDF: /usr/local/lib/libnetcdf.so (found suitable version "4.9.2", minimum required is "4.9.2")
-- Found netCDF: /usr/local/lib/libnetcdf.so (found version "4.9.2")
-- Found netCDFCxx version 4.3.1
-- Found netCDFCxx: /usr/local/lib/libnetcdf_c++4.so (found suitable version "4.3.1", minimum required is "4.3.1")
-- Found FFTW: /usr/local/lib/libfftw3.so
-- Found Gettext: /usr/local/bin/msgmerge (found version "0.22.5")
-- Found Intl: /usr/local/lib/libintl.so (found suitable version "0.22.5", minimum required is "0.22.5")
-- Found Libuuid: /usr/local/lib/libuuid.so
-- Configuring done (1.3s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_C_COMPILER
CMAKE_C_FLAGS
CMAKE_C_FLAGS_DEBUG
CMAKE_C_FLAGS_RELEASE
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-- Build files have been written to: /wrkdirs/usr/ports/science/bout++-merging-filaments/work/.build
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for bout++-merging-filaments-g20200812_1
[ 25% 3/4] /usr/bin/c++ -DCHECK=2 -DFMT_SHARED -I/wrkdirs/usr/ports/science/bout++-merging-filaments/work/merging-filaments-ee5a7b9 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -MD -MT CMakeFiles/merging-flux.dir/cephes/ellpe.cxx.o -MF CMakeFiles/merging-flux.dir/cephes/ellpe.cxx.o.d -o CMakeFiles/merging-flux.dir/cephes/ellpe.cxx.o -c /wrkdirs/usr/ports/science/bout++-merging-filaments/work/merging-filaments-ee5a7b9/cephes/ellpe.cxx
In file included from /wrkdirs/usr/ports/science/bout++-merging-filaments/work/merging-filaments-ee5a7b9/cephes/ellpe.cxx:68:
/usr/local/include/boutexception.hxx:3:2: warning: Header "boutexception.hxx" has moved to "bout/boutexception.hxx". Run `bin/bout-v5-header-upgrader.py` to fix [-W#warnings]
3 | #warning Header "boutexception.hxx" has moved to "bout/boutexception.hxx". Run `bin/bout-v5-header-upgrader.py` to fix
| ^
1 warning generated.
[ 50% 3/4] /usr/bin/c++ -DCHECK=2 -DFMT_SHARED -I/wrkdirs/usr/ports/science/bout++-merging-filaments/work/merging-filaments-ee5a7b9 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -MD -MT CMakeFiles/merging-flux.dir/cephes/ellpk.cxx.o -MF CMakeFiles/merging-flux.dir/cephes/ellpk.cxx.o.d -o CMakeFiles/merging-flux.dir/cephes/ellpk.cxx.o -c /wrkdirs/usr/ports/science/bout++-merging-filaments/work/merging-filaments-ee5a7b9/cephes/ellpk.cxx
In file included from /wrkdirs/usr/ports/science/bout++-merging-filaments/work/merging-filaments-ee5a7b9/cephes/ellpk.cxx:65:
/usr/local/include/boutexception.hxx:3:2: warning: Header "boutexception.hxx" has moved to "bout/boutexception.hxx". Run `bin/bout-v5-header-upgrader.py` to fix [-W#warnings]
3 | #warning Header "boutexception.hxx" has moved to "bout/boutexception.hxx". Run `bin/bout-v5-header-upgrader.py` to fix
| ^
1 warning generated.
[ 75% 3/4] /usr/bin/c++ -DCHECK=2 -DFMT_SHARED -I/wrkdirs/usr/ports/science/bout++-merging-filaments/work/merging-filaments-ee5a7b9 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -MD -MT CMakeFiles/merging-flux.dir/merging-flux.cxx.o -MF CMakeFiles/merging-flux.dir/merging-flux.cxx.o.d -o CMakeFiles/merging-flux.dir/merging-flux.cxx.o -c /wrkdirs/usr/ports/science/bout++-merging-filaments/work/merging-filaments-ee5a7b9/merging-flux.cxx
FAILED: CMakeFiles/merging-flux.dir/merging-flux.cxx.o
/usr/bin/c++ -DCHECK=2 -DFMT_SHARED -I/wrkdirs/usr/ports/science/bout++-merging-filaments/work/merging-filaments-ee5a7b9 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -MD -MT CMakeFiles/merging-flux.dir/merging-flux.cxx.o -MF CMakeFiles/merging-flux.dir/merging-flux.cxx.o.d -o CMakeFiles/merging-flux.dir/merging-flux.cxx.o -c /wrkdirs/usr/ports/science/bout++-merging-filaments/work/merging-filaments-ee5a7b9/merging-flux.cxx
In file included from /wrkdirs/usr/ports/science/bout++-merging-filaments/work/merging-filaments-ee5a7b9/merging-flux.cxx:4:
/usr/local/include/invert_laplace.hxx:3:2: warning: Header "invert_laplace.hxx" has moved to "bout/invert_laplace.hxx". Run `bin/bout-v5-header-upgrader.py` to fix [-W#warnings]
3 | #warning Header "invert_laplace.hxx" has moved to "bout/invert_laplace.hxx". Run `bin/bout-v5-header-upgrader.py` to fix
| ^
In file included from /wrkdirs/usr/ports/science/bout++-merging-filaments/work/merging-filaments-ee5a7b9/merging-flux.cxx:5:
/usr/local/include/field_factory.hxx:3:2: warning: Header "field_factory.hxx" has moved to "bout/field_factory.hxx". Run `bin/bout-v5-header-upgrader.py` to fix [-W#warnings]
3 | #warning Header "field_factory.hxx" has moved to "bout/field_factory.hxx". Run `bin/bout-v5-header-upgrader.py` to fix
| ^
/wrkdirs/usr/ports/science/bout++-merging-filaments/work/merging-filaments-ee5a7b9/merging-flux.cxx:44:24: warning: 'generate' is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
44 | BoutReal R = Rgen->generate(x,y,z,t);
| ^
/usr/local/include/bout/sys/expressionparser.hxx:68:5: note: 'generate' has been explicitly marked deprecated here
68 | [[deprecated("This will be removed in a future version. Implementations should "
| ^
/wrkdirs/usr/ports/science/bout++-merging-filaments/work/merging-filaments-ee5a7b9/merging-flux.cxx:45:24: warning: 'generate' is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
45 | BoutReal Z = Zgen->generate(x,y,z,t);
| ^
/usr/local/include/bout/sys/expressionparser.hxx:68:5: note: 'generate' has been explicitly marked deprecated here
68 | [[deprecated("This will be removed in a future version. Implementations should "
| ^
/wrkdirs/usr/ports/science/bout++-merging-filaments/work/merging-filaments-ee5a7b9/merging-flux.cxx:55:36: warning: 'generate' is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
55 | BoutReal Rc_new = (*argsit++)->generate(0,0,0,0);
| ^
/usr/local/include/bout/sys/expressionparser.hxx:68:5: note: 'generate' has been explicitly marked deprecated here
68 | [[deprecated("This will be removed in a future version. Implementations should "
| ^
/wrkdirs/usr/ports/science/bout++-merging-filaments/work/merging-filaments-ee5a7b9/merging-flux.cxx:56:36: warning: 'generate' is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
56 | BoutReal Zc_new = (*argsit++)->generate(0,0,0,0);
| ^
/usr/local/include/bout/sys/expressionparser.hxx:68:5: note: 'generate' has been explicitly marked deprecated here
68 | [[deprecated("This will be removed in a future version. Implementations should "
| ^
/wrkdirs/usr/ports/science/bout++-merging-filaments/work/merging-filaments-ee5a7b9/merging-flux.cxx:159:17: error: assigning to 'Laplacian *' from incompatible type 'std::unique_ptr<Laplacian>'
159 | phiSolver = Laplacian::create(Options::getRoot()->getSection("phisolver"));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/science/bout++-merging-filaments/work/merging-filaments-ee5a7b9/merging-flux.cxx:160:17: error: assigning to 'Laplacian *' from incompatible type 'std::unique_ptr<Laplacian>'
160 | psiSolver = Laplacian::create(Options::getRoot()->getSection("psisolver"));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
6 warnings and 2 errors generated.
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/bout++-merging-filaments