[package - 133releng-armv7-quarterly][archivers/py-bitshuffle] Failed for py311-bitshuffle-0.5.1 in build
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Date: Wed, 20 Nov 2024 22:29:34 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere1/data/133releng-armv7-quarterly/019c097f521d/logs/py311-bitshuffle-0.5.1.log
Build URL: https://pkg-status.freebsd.org/ampere1/build.html?mastername=133releng-armv7-quarterly&build=019c097f521d
Log:
=>> Building archivers/py-bitshuffle
build started at Wed Nov 20 22:28:45 UTC 2024
port directory: /usr/ports/archivers/py-bitshuffle
package name: py311-bitshuffle-0.5.1
building for: FreeBSD 133releng-armv7-quarterly-job-07 13.3-RELEASE-p8 FreeBSD 13.3-RELEASE-p8 1303001 arm
maintained by: sunpoet@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1013 Oct 15 01:02 /usr/ports/archivers/py-bitshuffle/Makefile
Ports top last git commit: 019c097f5
Ports top unclean checkout: no
Port dir last git commit: db5128afd
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500023
Jail OSVERSION: 1303001
Job Id: 07
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sunpoet@FreeBSD.org
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PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/archivers/py-bitshuffle/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/archivers/py-bitshuffle/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/archivers/py-bitshuffle/work-py311/.cache HOME=/wrkdirs/usr/ports/archivers/py-bitshuffle/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/archivers/py-bitshuffle/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/archivers/py-bitshuffle/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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--End PLIST_SUB--
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PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
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#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
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# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
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UID=0
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max memory size (kbytes, -m) unlimited
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max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-bitshuffle-0.5.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[133releng-armv7-quarterly-job-07] Installing pkg-1.21.3...
[133releng-armv7-quarterly-job-07] Extracting pkg-1.21.3: .......... done
===> py311-bitshuffle-0.5.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py311-bitshuffle-0.5.1
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by py311-bitshuffle-0.5.1 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by py311-bitshuffle-0.5.1 for building
=> SHA256 Checksum OK for bitshuffle-0.5.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by py311-bitshuffle-0.5.1 for building
===> Extracting for py311-bitshuffle-0.5.1
=> SHA256 Checksum OK for bitshuffle-0.5.1.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for py311-bitshuffle-0.5.1
===> Applying FreeBSD patches for py311-bitshuffle-0.5.1 from /usr/ports/archivers/py-bitshuffle/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-bitshuffle-0.5.1 depends on package: py311-h5py>=2.4.0 - not found
===> Installing existing package /packages/All/py311-h5py-3.12.0.pkg
[133releng-armv7-quarterly-job-07] Installing py311-h5py-3.12.0...
[133releng-armv7-quarterly-job-07] `-- Installing hdf5-1.12.2_2,1...
[133releng-armv7-quarterly-job-07] | `-- Installing gcc13-13.3.0...
[133releng-armv7-quarterly-job-07] | | `-- Installing binutils-2.43.1,1...
[133releng-armv7-quarterly-job-07] | | `-- Installing indexinfo-0.3.1...
[133releng-armv7-quarterly-job-07] | | `-- Extracting indexinfo-0.3.1: .... done
[133releng-armv7-quarterly-job-07] | | `-- Installing zstd-1.5.6...
[133releng-armv7-quarterly-job-07] | | | `-- Installing liblz4-1.10.0,1...
[133releng-armv7-quarterly-job-07] | | | `-- Extracting liblz4-1.10.0,1: .......... done
[133releng-armv7-quarterly-job-07] | | `-- Extracting zstd-1.5.6: .......... done
[133releng-armv7-quarterly-job-07] | | `-- Extracting binutils-2.43.1,1: .......... done
[133releng-armv7-quarterly-job-07] | | `-- Installing gmp-6.3.0...
[133releng-armv7-quarterly-job-07] | | `-- Extracting gmp-6.3.0: .......... done
[133releng-armv7-quarterly-job-07] | | `-- Installing mpc-1.3.1_1...
[133releng-armv7-quarterly-job-07] | | `-- Installing mpfr-4.2.1,1...
[133releng-armv7-quarterly-job-07] | | `-- Extracting mpfr-4.2.1,1: .......... done
[133releng-armv7-quarterly-job-07] | | `-- Extracting mpc-1.3.1_1: ......... done
[133releng-armv7-quarterly-job-07] | `-- Extracting gcc13-13.3.0: .......... done
[133releng-armv7-quarterly-job-07] | `-- Installing libaec-1.1.3...
[133releng-armv7-quarterly-job-07] | `-- Extracting libaec-1.1.3: .......... done
[133releng-armv7-quarterly-job-07] `-- Extracting hdf5-1.12.2_2,1: .......... done
[133releng-armv7-quarterly-job-07] `-- Installing py311-numpy-1.26.4_2,1...
[133releng-armv7-quarterly-job-07] | `-- Installing openblas-0.3.27,2...
[133releng-armv7-quarterly-job-07] | `-- Extracting openblas-0.3.27,2: .......... done
[133releng-armv7-quarterly-job-07] | `-- Installing py311-setuptools-63.1.0_1...
[133releng-armv7-quarterly-job-07] | | `-- Installing python311-3.11.10...
[133releng-armv7-quarterly-job-07] | | `-- Installing gettext-runtime-0.22.5...
[133releng-armv7-quarterly-job-07] | | `-- Extracting gettext-runtime-0.22.5: .......... done
[133releng-armv7-quarterly-job-07] | | `-- Installing libffi-3.4.6...
[133releng-armv7-quarterly-job-07] | | `-- Extracting libffi-3.4.6: .......... done
[133releng-armv7-quarterly-job-07] | | `-- Installing mpdecimal-4.0.0...
[133releng-armv7-quarterly-job-07] | | `-- Extracting mpdecimal-4.0.0: .......... done
[133releng-armv7-quarterly-job-07] | | `-- Installing readline-8.2.13_1...
[133releng-armv7-quarterly-job-07] | | `-- Extracting readline-8.2.13_1: .......... done
[133releng-armv7-quarterly-job-07] | | `-- Extracting python311-3.11.10: .......... done
[133releng-armv7-quarterly-job-07] | `-- Extracting py311-setuptools-63.1.0_1: .......... done
[133releng-armv7-quarterly-job-07] | `-- Installing suitesparse-umfpack-6.3.3_1...
[133releng-armv7-quarterly-job-07] | | `-- Installing suitesparse-amd-3.3.2...
[133releng-armv7-quarterly-job-07] | | `-- Installing suitesparse-config-7.7.0_1...
[133releng-armv7-quarterly-job-07] | | `-- Extracting suitesparse-config-7.7.0_1: .......... done
[133releng-armv7-quarterly-job-07] | | `-- Extracting suitesparse-amd-3.3.2: .......... done
[133releng-armv7-quarterly-job-07] | | `-- Installing suitesparse-camd-3.3.2...
[133releng-armv7-quarterly-job-07] | | `-- Extracting suitesparse-camd-3.3.2: .......... done
[133releng-armv7-quarterly-job-07] | | `-- Installing suitesparse-ccolamd-3.3.3...
[133releng-armv7-quarterly-job-07] | | `-- Extracting suitesparse-ccolamd-3.3.3: .......... done
[133releng-armv7-quarterly-job-07] | | `-- Installing suitesparse-cholmod-5.2.1_1...
[133releng-armv7-quarterly-job-07] | | `-- Installing suitesparse-colamd-3.3.3...
[133releng-armv7-quarterly-job-07] | | `-- Extracting suitesparse-colamd-3.3.3: .......... done
[133releng-armv7-quarterly-job-07] | | `-- Extracting suitesparse-cholmod-5.2.1_1: .......... done
[133releng-armv7-quarterly-job-07] | `-- Extracting suitesparse-umfpack-6.3.3_1: .......... done
[133releng-armv7-quarterly-job-07] `-- Extracting py311-numpy-1.26.4_2,1: .......... done
[133releng-armv7-quarterly-job-07] Extracting py311-h5py-3.12.0: .......... done
=====
Message from gcc13-13.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc13
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python311-3.11.10:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py311-gdbm databases/py-gdbm@py311
py311-sqlite3 databases/py-sqlite3@py311
py311-tkinter x11-toolkits/py-tkinter@py311
===> py311-bitshuffle-0.5.1 depends on package: py311-h5py>=2.4.0 - found
===> Returning to build of py311-bitshuffle-0.5.1
===> py311-bitshuffle-0.5.1 depends on package: py311-numpy>=0,1 - found
===> py311-bitshuffle-0.5.1 depends on package: py311-setuptools>=0.7 - found
===> py311-bitshuffle-0.5.1 depends on package: py311-wheel>=0 - not found
===> Installing existing package /packages/All/py311-wheel-0.44.0.pkg
[133releng-armv7-quarterly-job-07] Installing py311-wheel-0.44.0...
[133releng-armv7-quarterly-job-07] Extracting py311-wheel-0.44.0: .......... done
===> py311-bitshuffle-0.5.1 depends on package: py311-wheel>=0 - found
===> Returning to build of py311-bitshuffle-0.5.1
===> py311-bitshuffle-0.5.1 depends on package: pkgconf>=1.3.0_1 - not found
===> Installing existing package /packages/All/pkgconf-2.3.0,1.pkg
[133releng-armv7-quarterly-job-07] Installing pkgconf-2.3.0,1...
[133releng-armv7-quarterly-job-07] Extracting pkgconf-2.3.0,1: .......... done
===> py311-bitshuffle-0.5.1 depends on package: pkgconf>=1.3.0_1 - found
===> Returning to build of py311-bitshuffle-0.5.1
===> py311-bitshuffle-0.5.1 depends on executable: cython-3.11 - not found
===> Installing existing package /packages/All/py311-cython-0.29.37_1.pkg
[133releng-armv7-quarterly-job-07] Installing py311-cython-0.29.37_1...
[133releng-armv7-quarterly-job-07] Extracting py311-cython-0.29.37_1: .......... done
===> py311-bitshuffle-0.5.1 depends on executable: cython-3.11 - found
===> Returning to build of py311-bitshuffle-0.5.1
===> py311-bitshuffle-0.5.1 depends on file: /usr/local/bin/python3.11 - found
===> py311-bitshuffle-0.5.1 depends on package: py311-build>=0 - not found
===> Installing existing package /packages/All/py311-build-1.2.2.pkg
[133releng-armv7-quarterly-job-07] Installing py311-build-1.2.2...
[133releng-armv7-quarterly-job-07] `-- Installing py311-packaging-24.1...
[133releng-armv7-quarterly-job-07] `-- Extracting py311-packaging-24.1: .......... done
[133releng-armv7-quarterly-job-07] `-- Installing py311-pyproject_hooks-1.1.0_1...
[133releng-armv7-quarterly-job-07] `-- Extracting py311-pyproject_hooks-1.1.0_1: .......... done
[133releng-armv7-quarterly-job-07] Extracting py311-build-1.2.2: .......... done
===> py311-bitshuffle-0.5.1 depends on package: py311-build>=0 - found
===> Returning to build of py311-bitshuffle-0.5.1
===> py311-bitshuffle-0.5.1 depends on package: py311-installer>=0 - not found
===> Installing existing package /packages/All/py311-installer-0.7.0.pkg
[133releng-armv7-quarterly-job-07] Installing py311-installer-0.7.0...
[133releng-armv7-quarterly-job-07] Extracting py311-installer-0.7.0: .......... done
===> py311-bitshuffle-0.5.1 depends on package: py311-installer>=0 - found
===> Returning to build of py311-bitshuffle-0.5.1
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for py311-bitshuffle-0.5.1
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for py311-bitshuffle-0.5.1
* Getting build dependencies for wheel...
* Building wheel...
running bdist_wheel
running build
running build_py
creating build
creating build/lib.freebsd-13.3-RELEASE-p8-arm-cpython-311
creating build/lib.freebsd-13.3-RELEASE-p8-arm-cpython-311/bitshuffle
copying bitshuffle/__init__.py -> build/lib.freebsd-13.3-RELEASE-p8-arm-cpython-311/bitshuffle
running build_ext
/usr/local/lib/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /wrkdirs/usr/ports/archivers/py-bitshuffle/work-py311/bitshuffle-0.5.1/bitshuffle/ext.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling bitshuffle/ext.pyx because it depends on /usr/local/lib/python3.11/site-packages/numpy/__init__.pxd.
[1/1] Cythonizing bitshuffle/ext.pyx
#################################
# Compiling with OpenMP support #
#################################
building 'bitshuffle.ext' extension
creating build/temp.freebsd-13.3-RELEASE-p8-arm-cpython-311
creating build/temp.freebsd-13.3-RELEASE-p8-arm-cpython-311/bitshuffle
creating build/temp.freebsd-13.3-RELEASE-p8-arm-cpython-311/lz4
creating build/temp.freebsd-13.3-RELEASE-p8-arm-cpython-311/src
cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=5 -DBSHUF_VERSION_POINT=1 -Isrc/ -Ilz4/ -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c bitshuffle/ext.c -o build/temp.freebsd-13.3-RELEASE-p8-arm-cpython-311/bitshuffle/ext.o -O3 -ffast-math -fPIC -fno-strict-aliasing -mcpu=native -fopenmp -std=c99
In file included from bitshuffle/ext.c:798:
In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5:
In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929:
/usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^
bitshuffle/ext.c:808:10: fatal error: 'omp.h' file not found
808 | #include <omp.h>
| ^~~~~~~
1 warning and 1 error generated.
error: command '/usr/bin/cc' failed with exit code 1
ERROR Backend subprocess exited when trying to invoke build_wheel
*** Error code 1
Stop.
make: stopped in /usr/ports/archivers/py-bitshuffle