[package - main-amd64-default][biology/seqwish] Failed for seqwish-0.7.10 in build
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Date: Fri, 01 Nov 2024 00:40:45 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/p35e33b5b9186_sd0f9b0bd19b/logs/seqwish-0.7.10.log
Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=p35e33b5b9186_sd0f9b0bd19b
Log:
=>> Building biology/seqwish
build started at Fri Nov 1 00:40:05 UTC 2024
port directory: /usr/ports/biology/seqwish
package name: seqwish-0.7.10
building for: FreeBSD main-amd64-default-job-03 15.0-CURRENT FreeBSD 15.0-CURRENT 1500026 amd64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 840 May 21 01:01 /usr/ports/biology/seqwish/Makefile
Ports top last git commit: 35e33b5b918
Ports top unclean checkout: no
Port dir last git commit: 04eb409d363
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500023
Jail OSVERSION: 1500026
Job Id: 03
!!! Jail is newer than host. (Jail: 1500026, Host: 1500023) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for seqwish-0.7.10:
OPENMP=on: Parallel processing support via OpenMP
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
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XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -
m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
CMAKE_BUILD_TYPE="release" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seqwish" EXAMPLESDIR="share/examples/seqwish" DATADIR="share/seqwish" WWWDIR="www/seqwish" ETCDIR="etc/seqwish"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seqwish DOCSDIR=/usr/local/share/doc/seqwish EXAMPLESDIR=/usr/local/share/examples/seqwish WWWDIR=/usr/local/www/seqwish ETCDIR=/usr/local/etc/seqwish
--End SUB_LIST--
---Begin make.conf---
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
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MAKE_JOBS_NUMBER=3
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BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
ulimit: can't get limit: Invalid argument
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
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max user processes (-u) 89999
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virtual mem size (kbytes, -v) unlimited
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umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> seqwish-0.7.10 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[main-amd64-default-job-03] Installing pkg-1.21.3...
[main-amd64-default-job-03] Extracting pkg-1.21.3: .......... done
===> seqwish-0.7.10 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of seqwish-0.7.10
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by seqwish-0.7.10 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by seqwish-0.7.10 for building
=> SHA256 Checksum OK for seqwish-v0.7.10.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by seqwish-0.7.10 for building
===> Extracting for seqwish-0.7.10
=> SHA256 Checksum OK for seqwish-v0.7.10.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for seqwish-0.7.10
===> Applying FreeBSD patches for seqwish-0.7.10 from /usr/ports/biology/seqwish/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> seqwish-0.7.10 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.30.5.pkg
[main-amd64-default-job-03] Installing cmake-core-3.30.5...
[main-amd64-default-job-03] `-- Installing expat-2.6.3...
[main-amd64-default-job-03] `-- Extracting expat-2.6.3: .......... done
<snip>
-- Check size of int64_t
-- Check size of int64_t - done
-- Looking for PRId64
-- Looking for PRId64 - found
CMake Warning (dev) at external/googletest/googletest/CMakeLists.txt:47 (project):
Policy CMP0048 is not set: project() command manages VERSION variables.
Run "cmake --help-policy CMP0048" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The following variable(s) would be set to empty:
PROJECT_VERSION
PROJECT_VERSION_MAJOR
PROJECT_VERSION_MINOR
PROJECT_VERSION_PATCH
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Deprecation Warning at external/googletest/googletest/CMakeLists.txt:48 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
CMake Warning (dev) at external/googletest/googletest/cmake/internal_utils.cmake:211 (find_package):
Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
are removed. Run "cmake --help-policy CMP0148" for policy details. Use
the cmake_policy command to set the policy and suppress this warning.
Call Stack (most recent call first):
external/googletest/googletest/CMakeLists.txt:60 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Looking for C++ include cstdio
-- Looking for C++ include cstdio - found
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Configuring done (6.3s)
-- Generating done (0.4s)
-- Build files have been written to: /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build
cd /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-configure
--- sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-build ---
[ 80%] Performing build step for 'sdsl-lite'
cd /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build && /usr/bin/make
[ 0%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/divsufsort.o
[ 0%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/divsufsort.o
[ 0%] Building CXX object external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o
[ 10%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/sssort.o
[ 10%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/sssort.o
[ 20%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/trsort.o
[ 20%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/trsort.o
[ 20%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/utils.o
[ 20%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/utils.o
[ 20%] Linking C static library libdivsufsort.a
[ 20%] Built target divsufsort
[ 20%] Building CXX object lib/CMakeFiles/sdsl.dir/bits.cpp.o
[ 20%] Linking C static library libdivsufsort64.a
[ 20%] Built target divsufsort64
[ 20%] Building CXX object lib/CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o
[ 20%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o
[ 30%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o
[ 30%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o
[ 30%] Building CXX object lib/CMakeFiles/sdsl.dir/config.cpp.o
[ 30%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_config.cpp.o
[ 40%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_isa.cpp.o
[ 40%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp.cpp.o
[ 40%] Linking CXX static library libgtest.a
[ 40%] Built target gtest
[ 40%] Building CXX object external/googletest/googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o
In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.10/deps/sdsl-lite/lib/construct_lcp.cpp:6:
/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/construct_lcp.hpp:130:53: warning: instantiation of variable 'sdsl::key_text_trait<'\b'>::KEY_TEXT' required here, but no definition is available [-Wundefined-var-template]
130 | const char* KEY_TEXT = key_text_trait<t_width>::KEY_TEXT;
| ^
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.10/deps/sdsl-lite/lib/construct_lcp.cpp:209:25: note: in instantiation of function template specialization 'sdsl::construct_lcp_PHI<(unsigned char)'\b'>' requested here
209 | construct_lcp_PHI<8>(config);
| ^
/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/config.hpp:51:24: note: forward declaration of template entity is here
51 | static const char* KEY_TEXT;
| ^
/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/construct_lcp.hpp:130:53: note: add an explicit instantiation declaration to suppress this warning if 'sdsl::key_text_trait<'\b'>::KEY_TEXT' is explicitly instantiated in another translation unit
130 | const char* KEY_TEXT = key_text_trait<t_width>::KEY_TEXT;
| ^
[ 40%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o
[ 50%] Linking CXX static library libgtest_main.a
[ 50%] Built target gtest_main
[ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa.cpp.o
[ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa_se.cpp.o
1 warning generated.
[ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o
[ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/io.cpp.o
[ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o
[ 70%] Building CXX object lib/CMakeFiles/sdsl.dir/louds_tree.cpp.o
[ 70%] Building CXX object lib/CMakeFiles/sdsl.dir/memory_management.cpp.o
In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.10/deps/sdsl-lite/lib/louds_tree.cpp:1:
/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/louds_tree.hpp:182:51: error: no member named 'm_select1' in 'louds_tree<bit_vec_t, select_1_t, select_0_t>'; did you mean 'm_bv_select1'?
182 | util::swap_support(m_bv_select1, tree.m_select1, &m_bv, &(tree.m_bv));
| ^~~~~~~~~
| m_bv_select1
/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/louds_tree.hpp:68:25: note: 'm_bv_select1' declared here
68 | select_1_type m_bv_select1; // select support for 1-bits on m_bv
| ^
/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/louds_tree.hpp:183:51: error: no member named 'm_select0' in 'louds_tree<bit_vec_t, select_1_t, select_0_t>'; did you mean 'm_bv_select0'?
183 | util::swap_support(m_bv_select0, tree.m_select0, &m_bv, &(tree.m_bv));
| ^~~~~~~~~
| m_bv_select0
/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/louds_tree.hpp:69:25: note: 'm_bv_select0' declared here
69 | select_0_type m_bv_select0; // select support for 0-bits on m_bv
| ^
In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.10/deps/sdsl-lite/lib/lcp_support_tree.cpp:1:
In file included from /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/lcp_support_tree.hpp:4:
In file included from /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/lcp.hpp:215:
In file included from /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/lcp_support_sada.hpp:27:
In file included from /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/csa_sada.hpp:29:
In file included from /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/csa_sampling_strategy.hpp:57:
In file included from /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/wavelet_trees.hpp:34:
In file included from /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/wt_gmr.hpp:27:
In file included from /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/vectors.hpp:8:
/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/dac_vector.hpp:196:35: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
196 | double f[max_msb + 2][max_levels + 1];
| ^~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/dac_vector.hpp:196:35: note: function parameter 'max_levels' with unknown value cannot be used in a constant expression
/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/dac_vector.hpp:177:42: note: declared here
177 | dac_vector_dp(Container&& c, int max_levels = t_default_max_levels) {
| ^
/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/dac_vector.hpp:196:22: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
196 | double f[max_msb + 2][max_levels + 1];
| ^~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/dac_vector.hpp:196:22: note: read of non-const variable 'max_msb' is not allowed in a constant expression
/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/dac_vector.hpp:182:17: note: declared here
182 | int max_msb = 0;
| ^
/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/dac_vector.hpp:197:34: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
197 | int nxt[max_msb + 2][max_levels + 1];
| ^~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/dac_vector.hpp:197:34: note: function parameter 'max_levels' with unknown value cannot be used in a constant expression
/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/dac_vector.hpp:177:42: note: declared here
177 | dac_vector_dp(Container&& c, int max_levels = t_default_max_levels) {
| ^
/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/dac_vector.hpp:197:21: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
197 | int nxt[max_msb + 2][max_levels + 1];
| ^~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/dac_vector.hpp:197:21: note: read of non-const variable 'max_msb' is not allowed in a constant expression
/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/dac_vector.hpp:182:17: note: declared here
182 | int max_msb = 0;
| ^
2 errors generated.
--- lib/CMakeFiles/sdsl.dir/louds_tree.cpp.o ---
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4 warnings generated.
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make[4]: 1 error
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*** [all] Error code 2
make[3]: stopped making "default_target" in /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build
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*** [sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-build] Error code 2
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make[2]: 1 error
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*** [CMakeFiles/sdsl-lite.dir/all] Error code 2
make[1]: stopped making "all" in /wrkdirs/usr/ports/biology/seqwish/work/.build
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make[1]: stopped making "all" in /wrkdirs/usr/ports/biology/seqwish/work/.build
*** [all] Error code 2
make: stopped making "all" in /wrkdirs/usr/ports/biology/seqwish/work/.build
make: 1 error
make: stopped making "all" in /wrkdirs/usr/ports/biology/seqwish/work/.build
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped making "build" in /usr/ports/biology/seqwish