[package - 140amd64-default][math/py-pygslodeiv2] Failed for py311-pygslodeiv2-0.9.4_3 in build
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Date: Thu, 30 May 2024 01:57:27 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy22/data/140amd64-default/02faf78f4c9b/logs/py311-pygslodeiv2-0.9.4_3.log
Build URL: https://pkg-status.freebsd.org/beefy22/build.html?mastername=140amd64-default&build=02faf78f4c9b
Log:
=>> Building math/py-pygslodeiv2
build started at Thu May 30 01:57:21 UTC 2024
port directory: /usr/ports/math/py-pygslodeiv2
package name: py311-pygslodeiv2-0.9.4_3
building for: FreeBSD 140amd64-default-job-01 14.0-RELEASE-p6 FreeBSD 14.0-RELEASE-p6 amd64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 593 May 21 01:01 /usr/ports/math/py-pygslodeiv2/Makefile
Ports top last git commit: 02faf78f4
Ports top unclean checkout: no
Port dir last git commit: a40e26254
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-30-g79e3edcd
Host OSVERSION: 1500018
Jail OSVERSION: 1400097
Job Id: 01
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--MAINTAINER--
yuri@FreeBSD.org
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--CONFIGURE_ARGS--
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PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-pygslodeiv2/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-pygslodeiv2/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/math/py-pygslodeiv2/work-py311/.cache HOME=/wrkdirs/usr/ports/math/py-pygslodeiv2/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-pygslodeiv2/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/py-pygslodeiv2/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
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--End PLIST_SUB--
--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pygslodeiv2 DOCSDIR=/usr/local/share/doc/pygslodeiv2 EXAMPLESDIR=/usr/local/share/examples/pygslodeiv2 WWWDIR=/usr/local/www/pygslodeiv2 ETCDIR=/usr/local/etc/pygslodeiv2
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WRKDIRPREFIX=/wrkdirs
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PACKAGES=/packages
DISTDIR=/distfiles
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#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
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MAKE_JOBS_NUMBER=3
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max memory size (kbytes, -m) unlimited
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max user processes (-u) 89999
open files (-n) 8192
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swap limit (kbytes, -w) unlimited
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pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-pygslodeiv2-0.9.4_3 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[140amd64-default-job-01] Installing pkg-1.21.3...
[140amd64-default-job-01] Extracting pkg-1.21.3: .......... done
===> py311-pygslodeiv2-0.9.4_3 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py311-pygslodeiv2-0.9.4_3
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by py311-pygslodeiv2-0.9.4_3 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by py311-pygslodeiv2-0.9.4_3 for building
=> SHA256 Checksum OK for pygslodeiv2-0.9.4.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by py311-pygslodeiv2-0.9.4_3 for building
===> Extracting for py311-pygslodeiv2-0.9.4_3
=> SHA256 Checksum OK for pygslodeiv2-0.9.4.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for py311-pygslodeiv2-0.9.4_3
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-pygslodeiv2-0.9.4_3 depends on package: py311-numpy>=1.16,1<1.26,1 - not found
===> Installing existing package /packages/All/py311-numpy-1.25.0_7,1.pkg
[140amd64-default-job-01] Installing py311-numpy-1.25.0_7,1...
[140amd64-default-job-01] `-- Installing gcc13-13.2.0_4...
[140amd64-default-job-01] | `-- Installing binutils-2.40_5,1...
[140amd64-default-job-01] | | `-- Installing gettext-runtime-0.22.5...
[140amd64-default-job-01] | | `-- Installing indexinfo-0.3.1...
[140amd64-default-job-01] | | `-- Extracting indexinfo-0.3.1: .... done
[140amd64-default-job-01] | | `-- Extracting gettext-runtime-0.22.5: .......... done
[140amd64-default-job-01] | | `-- Installing zstd-1.5.6...
[140amd64-default-job-01] | | `-- Installing liblz4-1.9.4_1,1...
[140amd64-default-job-01] | | `-- Extracting liblz4-1.9.4_1,1: .......... done
[140amd64-default-job-01] | | `-- Extracting zstd-1.5.6: .......... done
[140amd64-default-job-01] | `-- Extracting binutils-2.40_5,1: .......... done
[140amd64-default-job-01] | `-- Installing gmp-6.3.0...
[140amd64-default-job-01] | `-- Extracting gmp-6.3.0: .......... done
[140amd64-default-job-01] | `-- Installing mpc-1.3.1_1...
[140amd64-default-job-01] | | `-- Installing mpfr-4.2.1,1...
[140amd64-default-job-01] | | `-- Extracting mpfr-4.2.1,1: .......... done
[140amd64-default-job-01] | `-- Extracting mpc-1.3.1_1: ......... done
[140amd64-default-job-01] `-- Extracting gcc13-13.2.0_4: .......... done
[140amd64-default-job-01] `-- Installing openblas-0.3.25,2...
[140amd64-default-job-01] `-- Extracting openblas-0.3.25,2: .......... done
[140amd64-default-job-01] `-- Installing py311-setuptools-63.1.0_1...
[140amd64-default-job-01] | `-- Installing python311-3.11.9...
[140amd64-default-job-01] | | `-- Installing libffi-3.4.6...
[140amd64-default-job-01] | | `-- Extracting libffi-3.4.6: .......... done
[140amd64-default-job-01] | | `-- Installing mpdecimal-4.0.0...
[140amd64-default-job-01] | | `-- Extracting mpdecimal-4.0.0: .......... done
[140amd64-default-job-01] | | `-- Installing readline-8.2.10...
[140amd64-default-job-01] | | `-- Extracting readline-8.2.10: .......... done
[140amd64-default-job-01] | `-- Extracting python311-3.11.9: .......... done
[140amd64-default-job-01] `-- Extracting py311-setuptools-63.1.0_1: .......... done
[140amd64-default-job-01] `-- Installing suitesparse-umfpack-6.3.3...
[140amd64-default-job-01] | `-- Installing suitesparse-amd-3.3.2...
[140amd64-default-job-01] | | `-- Installing suitesparse-config-7.7.0...
[140amd64-default-job-01] | | `-- Extracting suitesparse-config-7.7.0: .......... done
[140amd64-default-job-01] | `-- Extracting suitesparse-amd-3.3.2: .......... done
[140amd64-default-job-01] | `-- Installing suitesparse-camd-3.3.2...
[140amd64-default-job-01] | `-- Extracting suitesparse-camd-3.3.2: .......... done
[140amd64-default-job-01] | `-- Installing suitesparse-ccolamd-3.3.3...
[140amd64-default-job-01] | `-- Extracting suitesparse-ccolamd-3.3.3: .......... done
[140amd64-default-job-01] | `-- Installing suitesparse-cholmod-5.2.1...
[140amd64-default-job-01] | | `-- Installing suitesparse-colamd-3.3.3...
[140amd64-default-job-01] | | `-- Extracting suitesparse-colamd-3.3.3: .......... done
[140amd64-default-job-01] | `-- Extracting suitesparse-cholmod-5.2.1: .......... done
[140amd64-default-job-01] `-- Extracting suitesparse-umfpack-6.3.3: .......... done
[140amd64-default-job-01] Extracting py311-numpy-1.25.0_7,1: .......... done
=====
Message from gcc13-13.2.0_4:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc13
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python311-3.11.9:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py311-gdbm databases/py-gdbm@py311
py311-sqlite3 databases/py-sqlite3@py311
py311-tkinter x11-toolkits/py-tkinter@py311
=====
Message from py311-setuptools-63.1.0_1:
--
Only /usr/local/bin/easy_install-3.11 script has been installed
since Python 3.11 is not the default Python version.
===> py311-pygslodeiv2-0.9.4_3 depends on package: py311-numpy>=1.16,1<1.26,1 - found
===> Returning to build of py311-pygslodeiv2-0.9.4_3
===> py311-pygslodeiv2-0.9.4_3 depends on package: py311-setuptools>=63.1.0 - found
===> py311-pygslodeiv2-0.9.4_3 depends on file: /usr/local/bin/python3.11 - found
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-pygslodeiv2-0.9.4_3 depends on shared library: libgsl.so - not found
===> Installing existing package /packages/All/gsl-2.7.1_1.pkg
[140amd64-default-job-01] Installing gsl-2.7.1_1...
[140amd64-default-job-01] Extracting gsl-2.7.1_1: .......... done
===> py311-pygslodeiv2-0.9.4_3 depends on shared library: libgsl.so - found (/usr/local/lib/libgsl.so)
===> Returning to build of py311-pygslodeiv2-0.9.4_3
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for py311-pygslodeiv2-0.9.4_3
running config
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for py311-pygslodeiv2-0.9.4_3
running build
running build_py
creating build
creating build/lib.freebsd-14.0-RELEASE-p6-amd64-cpython-311
creating build/lib.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2
copying pygslodeiv2/_release.py -> build/lib.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2
copying pygslodeiv2/_util.py -> build/lib.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2
copying pygslodeiv2/__init__.py -> build/lib.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2
copying pygslodeiv2/_config.py -> build/lib.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2
creating build/lib.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2/tests
copying pygslodeiv2/tests/__init__.py -> build/lib.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2/tests
copying pygslodeiv2/tests/test_gsl_odeiv2.py -> build/lib.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2/tests
running egg_info
writing pygslodeiv2.egg-info/PKG-INFO
writing dependency_links to pygslodeiv2.egg-info/dependency_links.txt
writing requirements to pygslodeiv2.egg-info/requires.txt
writing top-level names to pygslodeiv2.egg-info/top_level.txt
reading manifest file 'pygslodeiv2.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
adding license file 'AUTHORS'
writing manifest file 'pygslodeiv2.egg-info/SOURCES.txt'
/usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'pygslodeiv2.include' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'pygslodeiv2.include' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'pygslodeiv2.include' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'pygslodeiv2.include' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
copying pygslodeiv2/_gsl_odeiv2.cpp -> build/lib.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2
copying pygslodeiv2/_gsl_odeiv2.pyx -> build/lib.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2
creating build/lib.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2/include
copying pygslodeiv2/include/gsl_odeiv2_anyode.hpp -> build/lib.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2/include
copying pygslodeiv2/include/gsl_odeiv2_anyode.pxd -> build/lib.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2/include
copying pygslodeiv2/include/gsl_odeiv2_anyode_nogil.pxd -> build/lib.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2/include
copying pygslodeiv2/include/gsl_odeiv2_anyode_parallel.hpp -> build/lib.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2/include
copying pygslodeiv2/include/gsl_odeiv2_anyode_parallel.pxd -> build/lib.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2/include
copying pygslodeiv2/include/gsl_odeiv2_cxx.hpp -> build/lib.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2/include
copying pygslodeiv2/include/gsl_odeiv2_cxx.pxd -> build/lib.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2/include
running build_ext
building 'pygslodeiv2._gsl_odeiv2' extension
creating build/temp.freebsd-14.0-RELEASE-p6-amd64-cpython-311
creating build/temp.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2
cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DANYODE_NO_LAPACK=1 -I/usr/local/lib/python3.11/site-packages/numpy/core/include -Ipygslodeiv2/include -Iexternal/anyode/include -I/usr/local/include/python3.11 -c pygslodeiv2/_gsl_odeiv2.cpp -o build/temp.freebsd-14.0-RELEASE-p6-amd64-cpython-311/pygslodeiv2/_gsl_odeiv2.o -std=c++11
pygslodeiv2/_gsl_odeiv2.cpp:201:12: fatal error: 'longintrepr.h' file not found
#include "longintrepr.h"
^~~~~~~~~~~~~~~
1 error generated.
error: command '/usr/bin/cc' failed with exit code 1
*** Error code 1
Stop.
make: stopped in /usr/ports/math/py-pygslodeiv2