[package - main-armv7-default][math/py-gau2grid] Failed for py39-gau2grid-2.0.7_2 in configure/runaway
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Date: Sat, 23 Mar 2024 22:53:38 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/pd5512ae7b8c6_s75464941dc/logs/py39-gau2grid-2.0.7_2.log
Build URL: https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=pd5512ae7b8c6_s75464941dc
Log:
=>> Building math/py-gau2grid
build started at Sat Mar 23 20:41:27 UTC 2024
port directory: /usr/ports/math/py-gau2grid
package name: py39-gau2grid-2.0.7_2
building for: FreeBSD main-armv7-default-job-11 15.0-CURRENT FreeBSD 15.0-CURRENT 1500015 arm
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 999 Jul 23 2023 /usr/ports/math/py-gau2grid/Makefile
Ports top last git commit: d5512ae7b8c
Ports top unclean checkout: no
Port dir last git commit: 1b33f9978e6
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-1-g1e9f97d6
Host OSVERSION: 1500006
Jail OSVERSION: 1500015
Job Id: 11
!!! Jail is newer than host. (Jail: 1500015, Host: 1500006) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
OSVERSION=1500015
UNAME_v=FreeBSD 15.0-CURRENT 1500015
UNAME_r=15.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.1-1-g1e9f97d6
MASTERMNT=/usr/local/poudriere/data/.m/main-armv7-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/main-armv7-default/11/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=main-armv7-default
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.1-1-g1e9f97d6
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=py39
MAKE_ARGS= FLAVOR=py39
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for py39-gau2grid-2.0.7_2:
NATIVE=off: Use native optimization (-march=native)
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py39/.cache HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-gau2grid/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/py-gau2grid/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py39/.cache HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-gau2grid/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/py-gau2grid/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/math/py-gau2grid/work-py39/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s
-m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/gau2grid" EXAMPLESDIR="share/examples/gau2grid" DATADIR="share/gau2grid" WWWDIR="www/gau2grid" ETCDIR="etc/gau2grid"
--End PLIST_SUB--
--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gau2grid DOCSDIR=/usr/local/share/doc/gau2grid EXAMPLESDIR=/usr/local/share/examples/gau2grid WWWDIR=/usr/local/www/gau2grid ETCDIR=/usr/local/etc/gau2grid
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py39-gau2grid-2.0.7_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.9_1.pkg
[main-armv7-default-job-11] Installing pkg-1.20.9_1...
[main-armv7-default-job-11] Extracting pkg-1.20.9_1: .......... done
===> py39-gau2grid-2.0.7_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py39-gau2grid-2.0.7_2
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-gau2grid-2.0.7_2 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-gau2grid-2.0.7_2 for building
=> SHA256 Checksum OK for dgasmith-gau2grid-v2.0.7_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-gau2grid-2.0.7_2 for building
===> Extracting for py39-gau2grid-2.0.7_2
=> SHA256 Checksum OK for dgasmith-gau2grid-v2.0.7_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for py39-gau2grid-2.0.7_2
===> Applying FreeBSD patches for py39-gau2grid-2.0.7_2 from /usr/ports/math/py-gau2grid/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py39-gau2grid-2.0.7_2 depends on package: py39-numpy>=1.16,1<1.26,1 - not found
===> Installing existing package /packages/All/py39-numpy-1.25.0_6,1.pkg
[main-armv7-default-job-11] Installing py39-numpy-1.25.0_6,1...
[main-armv7-default-job-11] `-- Installing gcc13-13.2.0_4...
[main-armv7-default-job-11] | `-- Installing binutils-2.40_5,1...
[main-armv7-default-job-11] | | `-- Installing gettext-runtime-0.22.3_1...
[main-armv7-default-job-11] | | `-- Installing indexinfo-0.3.1...
[main-armv7-default-job-11] | | `-- Extracting indexinfo-0.3.1: .... done
[main-armv7-default-job-11] | | `-- Extracting gettext-runtime-0.22.3_1: .......... done
[main-armv7-default-job-11] | | `-- Installing zstd-1.5.5_1...
[main-armv7-default-job-11] | | `-- Installing liblz4-1.9.4_1,1...
[main-armv7-default-job-11] | | `-- Extracting liblz4-1.9.4_1,1: .......... done
[main-armv7-default-job-11] | | `-- Extracting zstd-1.5.5_1: .......... done
[main-armv7-default-job-11] | `-- Extracting binutils-2.40_5,1: .......... done
[main-armv7-default-job-11] | `-- Installing gmp-6.3.0...
[main-armv7-default-job-11] | `-- Extracting gmp-6.3.0: .......... done
[main-armv7-default-job-11] | `-- Installing mpc-1.3.1_1...
[main-armv7-default-job-11] | | `-- Installing mpfr-4.2.1,1...
[main-armv7-default-job-11] | | `-- Extracting mpfr-4.2.1,1: .......... done
[main-armv7-default-job-11] | `-- Extracting mpc-1.3.1_1: ......... done
[main-armv7-default-job-11] `-- Extracting gcc13-13.2.0_4: .......... done
[main-armv7-default-job-11] `-- Installing openblas-0.3.25,2...
[main-armv7-default-job-11] `-- Extracting openblas-0.3.25,2: .......... done
[main-armv7-default-job-11] `-- Installing py39-setuptools-63.1.0_1...
[main-armv7-default-job-11] | `-- Installing python39-3.9.18_1...
[main-armv7-default-job-11] | | `-- Installing libffi-3.4.4_1...
[main-armv7-default-job-11] | | `-- Extracting libffi-3.4.4_1: .......... done
[main-armv7-default-job-11] | | `-- Installing mpdecimal-2.5.1...
[main-armv7-default-job-11] | | `-- Extracting mpdecimal-2.5.1: .......... done
[main-armv7-default-job-11] | | `-- Installing readline-8.2.10...
[main-armv7-default-job-11] | | `-- Extracting readline-8.2.10: .......... done
[main-armv7-default-job-11] | `-- Extracting python39-3.9.18_1: .......... done
[main-armv7-default-job-11] `-- Extracting py39-setuptools-63.1.0_1: .......... done
[main-armv7-default-job-11] `-- Installing suitesparse-umfpack-6.3.2...
[main-armv7-default-job-11] | `-- Installing suitesparse-amd-3.3.1...
[main-armv7-default-job-11] | | `-- Installing suitesparse-config-7.6.1...
[main-armv7-default-job-11] | | `-- Extracting suitesparse-config-7.6.1: .......... done
[main-armv7-default-job-11] | `-- Extracting suitesparse-amd-3.3.1: .......... done
[main-armv7-default-job-11] | `-- Installing suitesparse-camd-3.3.1...
[main-armv7-default-job-11] | `-- Extracting suitesparse-camd-3.3.1: .......... done
[main-armv7-default-job-11] | `-- Installing suitesparse-ccolamd-3.3.2...
[main-armv7-default-job-11] | `-- Extracting suitesparse-ccolamd-3.3.2: .......... done
[main-armv7-default-job-11] | `-- Installing suitesparse-cholmod-5.2.0...
[main-armv7-default-job-11] | | `-- Installing suitesparse-colamd-3.3.2...
[main-armv7-default-job-11] | | `-- Extracting suitesparse-colamd-3.3.2: .......... done
[main-armv7-default-job-11] | `-- Extracting suitesparse-cholmod-5.2.0: .......... done
[main-armv7-default-job-11] `-- Extracting suitesparse-umfpack-6.3.2: .......... done
[main-armv7-default-job-11] Extracting py39-numpy-1.25.0_6,1: .......... done
=====
Message from gcc13-13.2.0_4:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc13
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python39-3.9.18_1:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py39-gdbm databases/py-gdbm@py39
py39-sqlite3 databases/py-sqlite3@py39
py39-tkinter x11-toolkits/py-tkinter@py39
===> py39-gau2grid-2.0.7_2 depends on package: py39-numpy>=1.16,1<1.26,1 - found
===> Returning to build of py39-gau2grid-2.0.7_2
===> py39-gau2grid-2.0.7_2 depends on executable: cmake - not found
===> Installing existing package /packages/All/cmake-core-3.28.3.pkg
[main-armv7-default-job-11] Installing cmake-core-3.28.3...
[main-armv7-default-job-11] `-- Installing expat-2.6.1...
[main-armv7-default-job-11] `-- Extracting expat-2.6.1: .......... done
[main-armv7-default-job-11] `-- Installing jsoncpp-1.9.5...
[main-armv7-default-job-11] `-- Extracting jsoncpp-1.9.5: .......... done
[main-armv7-default-job-11] `-- Installing libuv-1.48.0...
[main-armv7-default-job-11] `-- Extracting libuv-1.48.0: .......... done
[main-armv7-default-job-11] `-- Installing rhash-1.4.4_1...
[main-armv7-default-job-11] `-- Extracting rhash-1.4.4_1: .......... done
[main-armv7-default-job-11] Extracting cmake-core-3.28.3: .......... done
===> py39-gau2grid-2.0.7_2 depends on executable: cmake - found
===> Returning to build of py39-gau2grid-2.0.7_2
===> py39-gau2grid-2.0.7_2 depends on file: /usr/local/bin/cmake - found
===> py39-gau2grid-2.0.7_2 depends on executable: ninja - not found
===> Installing existing package /packages/All/ninja-1.11.1,2.pkg
[main-armv7-default-job-11] Installing ninja-1.11.1,2...
[main-armv7-default-job-11] Extracting ninja-1.11.1,2: ........ done
===> py39-gau2grid-2.0.7_2 depends on executable: ninja - found
===> Returning to build of py39-gau2grid-2.0.7_2
===> py39-gau2grid-2.0.7_2 depends on file: /usr/local/bin/python3.9 - found
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for py39-gau2grid-2.0.7_2
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/math/py-gau2grid/work-py39/.build
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- The C compiler identification is Clang 17.0.6
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Setting (unspecified) option MAX_AM: 8
-- Setting option CMAKE_BUILD_TYPE: Release
-- Setting option ENABLE_XHOST: false
-- Setting (unspecified) option BUILD_FPIC: ON
-- Setting (unspecified) option BUILD_SHARED_LIBS: ON
-- Setting (unspecified) option ENABLE_GENERIC: OFF
-- Setting (unspecified) option DISABLE_PRAGMA: OFF
-- Setting (unspecified) option CMAKE_INSTALL_LIBDIR: lib
-- Setting option PYMOD_INSTALL_LIBDIR: /usr/local/lib/python3.9/site-packages
-- Setting option INSTALL_PYMOD: ON
-- Setting (unspecified) option NATIVE_PYTHON_INSTALL: OFF
-- Setting (unspecified) option NATIVE_PYTHON_INSTALL_WITH_LIB: OFF
-- gau2grid install: /usr/local
CMake Warning (dev) at cmake/FindPythonLibsNew.cmake:59 (find_package):
Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
are removed. Run "cmake --help-policy CMP0148" for policy details. Use
the cmake_policy command to set the policy and suppress this warning.
Call Stack (most recent call first):
CMakeLists.txt:55 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found PythonInterp: /usr/local/bin/python3.9 (found suitable version "3.9.18", minimum required is "3.9")
-- Found PythonLibs: /usr/local/lib/libpython3.9.so
-- [36mFound Python 3.9[m: /usr/local/bin/python3.9 (found version 3.9.18)
-- Performing Test standard_math_library_linked_to_automatically
-- Performing Test standard_math_library_linked_to_automatically - Success
=>> Killing runaway build after 7200 seconds with no output