[package - 132releng-armv7-quarterly][devel/R-cran-rJava] Failed for R-cran-rJava-1.0.10 in stage
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Date: Tue, 12 Mar 2024 06:15:40 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: thierry@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere1/data/132releng-armv7-quarterly/c03c94943e1d/logs/R-cran-rJava-1.0.10.log Build URL: https://pkg-status.freebsd.org/ampere1/build.html?mastername=132releng-armv7-quarterly&build=c03c94943e1d Log: =>> Building devel/R-cran-rJava build started at Tue Mar 12 06:14:52 UTC 2024 port directory: /usr/ports/devel/R-cran-rJava package name: R-cran-rJava-1.0.10 building for: FreeBSD 132releng-armv7-quarterly-job-05 13.2-RELEASE-p6 FreeBSD 13.2-RELEASE-p6 1302001 arm maintained by: thierry@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 925 Jan 16 01:02 /usr/ports/devel/R-cran-rJava/Makefile Ports top last git commit: c03c94943 Ports top unclean checkout: no Port dir last git commit: 72cbe1a32 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1-1-g1e9f97d6 Host OSVERSION: 1500006 Jail OSVERSION: 1302001 Job Id: 05 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p6 1302001 UNAME_r=13.2-RELEASE-p6 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1-1-g1e9f97d6 MASTERMNT=/usr/local/poudriere/data/.m/132releng-armv7-quarterly/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/132releng-armv7-quarterly/05/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=132releng-armv7-quarterly SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/132releng-armv7-quarterly/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1-1-g1e9f97d6 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- thierry@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work XDG_CACHE_HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work/.cache HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/devel/R-cran-rJava/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/devel/R-cran-rJava/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- JAVA_HOME=/usr/local/openjdk8 JAVA=/usr/local/openjdk8/bin/java JAVAC=/usr/local/openjdk8/bin/javac JAVAH=/usr/local/openjdk8/bin/javah JAR=/usr/local/openjdk8/bin/jar LD_LIBRARY_PATH="/usr/local/openjdk8/jre/lib/armv7/server" JAVA_LD_LIBRARY_PATH="/usr/local/openjdk8/jre/lib/armv7/server" JAVA_LIBS="-Wl,-rpath=/usr/local/openjdk8/jre/lib/armv7/server -L/usr/local/openjdk8/jre/lib/armv7/server -ljvm -lpthread" JAVA_CPPFLAGS="-I/usr/local/openjdk8/jre/../include -I/usr/local/openjdk8/jre/../include/freebsd" F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work XDG_CACHE_HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work/.cache HOME=/wrkdirs/usr/ports/devel/R-cran-rJava/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/devel/R-cran-rJa va/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/devel/R-cran-rJava/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=""-Wl,-rpath=/usr/local/openjdk8/jre/lib/armv7/server " -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -fstack-protector-strong " LIBS="" CXX="c++" CX XFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" R_MOD_DIR=lib/R/library/rJava OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/rJava" EXAMPLESDIR="share/examples/rJava" DATADIR="share/rJava" WWWDIR="www/rJava" ETCDIR="etc/rJava" --End PLIST_SUB-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/rJava DOCSDIR=/usr/local/share/doc/rJava EXAMPLESDIR=/usr/local/share/examples/rJava WWWDIR=/usr/local/www/rJava ETCDIR=/usr/local/etc/rJava --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> R-cran-rJava-1.0.10 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9.pkg [132releng-armv7-quarterly-job-05] Installing pkg-1.20.9... [132releng-armv7-quarterly-job-05] Extracting pkg-1.20.9: .......... done ===> R-cran-rJava-1.0.10 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-rJava-1.0.10 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by R-cran-rJava-1.0.10 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by R-cran-rJava-1.0.10 for building => SHA256 Checksum OK for rJava_1.0-10.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by R-cran-rJava-1.0.10 for building ===> Extracting for R-cran-rJava-1.0.10 => SHA256 Checksum OK for rJava_1.0-10.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for R-cran-rJava-1.0.10 =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> R-cran-rJava-1.0.10 depends on file: /usr/local/openjdk8/bin/java - not found ===> Installing existing package /packages/All/openjdk8-8.392.08.1_1.pkg [132releng-armv7-quarterly-job-05] Installing openjdk8-8.392.08.1_1... [132releng-armv7-quarterly-job-05] `-- Installing alsa-lib-1.2.10... [132releng-armv7-quarterly-job-05] `-- Extracting alsa-lib-1.2.10: .......... done [132releng-armv7-quarterly-job-05] `-- Installing dejavu-2.37_3... [132releng-armv7-quarterly-job-05] | `-- Installing fontconfig-2.14.2,1... [132releng-armv7-quarterly-job-05] | | `-- Installing expat-2.5.0... [132releng-armv7-quarterly-job-05] | | `-- Extracting expat-2.5.0: .......... done [132releng-armv7-quarterly-job-05] | | `-- Installing freetype2-2.13.2... [132releng-armv7-quarterly-job-05] | | `-- Installing brotli-1.1.0,1... [132releng-armv7-quarterly-job-05] | | `-- Extracting brotli-1.1.0,1: .......... done [132releng-armv7-quarterly-job-05] | | `-- Installing png-1.6.40... [132releng-armv7-quarterly-job-05] | | `-- Extracting png-1.6.40: .......... done [132releng-armv7-quarterly-job-05] | | `-- Extracting freetype2-2.13.2: .......... done [132releng-armv7-quarterly-job-05] | `-- Extracting fontconfig-2.14.2,1: .......... done [132releng-armv7-quarterly-job-05] | `-- Installing mkfontscale-1.2.1... [132releng-armv7-quarterly-job-05] | | `-- Installing libfontenc-1.1.7... [132releng-armv7-quarterly-job-05] | | `-- Extracting libfontenc-1.1.7: ......... done [132releng-armv7-quarterly-job-05] | `-- Extracting mkfontscale-1.2.1: ....... done [132releng-armv7-quarterly-job-05] `-- Extracting dejavu-2.37_3: .......... done [132releng-armv7-quarterly-job-05] `-- Installing giflib-5.2.1... [132releng-armv7-quarterly-job-05] `-- Extracting giflib-5.2.1: .......... done [132releng-armv7-quarterly-job-05] `-- Installing java-zoneinfo-2021.e... [132releng-armv7-quarterly-job-05] `-- Extracting java-zoneinfo-2021.e: .......... done [132releng-armv7-quarterly-job-05] `-- Installing javavmwrapper-2.7.9... [132releng-armv7-quarterly-job-05] `-- Extracting javavmwrapper-2.7.9: .......... done <snip> [132releng-armv7-quarterly-job-05] | `-- Installing openjpeg-2.5.2... [132releng-armv7-quarterly-job-05] | `-- Extracting openjpeg-2.5.2: .......... done [132releng-armv7-quarterly-job-05] | `-- Installing poppler-data-0.4.12... [132releng-armv7-quarterly-job-05] | `-- Extracting poppler-data-0.4.12: .......... done [132releng-armv7-quarterly-job-05] | `-- Installing urw-base35-fonts-20200910... [132releng-armv7-quarterly-job-05] | `-- Extracting urw-base35-fonts-20200910: .......... done [132releng-armv7-quarterly-job-05] `-- Extracting ghostscript10-10.02.1_1: .......... done [132releng-armv7-quarterly-job-05] `-- Installing gmake-4.3_2... [132releng-armv7-quarterly-job-05] `-- Extracting gmake-4.3_2: .......... done [132releng-armv7-quarterly-job-05] `-- Installing harfbuzz-8.3.0... [132releng-armv7-quarterly-job-05] | `-- Installing graphite2-1.3.14... [132releng-armv7-quarterly-job-05] | `-- Extracting graphite2-1.3.14: .......... done [132releng-armv7-quarterly-job-05] `-- Extracting harfbuzz-8.3.0: .......... done [132releng-armv7-quarterly-job-05] `-- Installing icu-74.2,1... [132releng-armv7-quarterly-job-05] `-- Extracting icu-74.2,1: .......... done [132releng-armv7-quarterly-job-05] `-- Installing libXScrnSaver-1.2.4... [132releng-armv7-quarterly-job-05] `-- Extracting libXScrnSaver-1.2.4: .......... done [132releng-armv7-quarterly-job-05] `-- Installing libXmu-1.1.4,1... [132releng-armv7-quarterly-job-05] `-- Extracting libXmu-1.1.4,1: .......... done [132releng-armv7-quarterly-job-05] `-- Installing pango-1.50.14... [132releng-armv7-quarterly-job-05] | `-- Installing encodings-1.0.5,1... [132releng-armv7-quarterly-job-05] | `-- Extracting encodings-1.0.5,1: .......... done [132releng-armv7-quarterly-job-05] | `-- Installing fribidi-1.0.13... [132releng-armv7-quarterly-job-05] | `-- Extracting fribidi-1.0.13: .......... done [132releng-armv7-quarterly-job-05] | `-- Installing libXft-2.3.7... [132releng-armv7-quarterly-job-05] | `-- Extracting libXft-2.3.7: .......... done [132releng-armv7-quarterly-job-05] | `-- Installing libthai-0.1.29... [132releng-armv7-quarterly-job-05] | | `-- Installing libdatrie-0.2.13_1... [132releng-armv7-quarterly-job-05] | | `-- Extracting libdatrie-0.2.13_1: .......... done [132releng-armv7-quarterly-job-05] | `-- Extracting libthai-0.1.29: .......... done [132releng-armv7-quarterly-job-05] | `-- Installing xorg-fonts-truetype-7.7_1... [132releng-armv7-quarterly-job-05] | | `-- Installing font-bh-ttf-1.0.3_5... [132releng-armv7-quarterly-job-05] | | `-- Extracting font-bh-ttf-1.0.3_5: .......... done [132releng-armv7-quarterly-job-05] | | `-- Installing font-misc-ethiopic-1.0.4... [132releng-armv7-quarterly-job-05] | | `-- Extracting font-misc-ethiopic-1.0.4: ...... done [132releng-armv7-quarterly-job-05] | | `-- Installing font-misc-meltho-1.0.3_5... [132releng-armv7-quarterly-job-05] | | `-- Extracting font-misc-meltho-1.0.3_5: .......... done [132releng-armv7-quarterly-job-05] | `-- Extracting xorg-fonts-truetype-7.7_1: ... done [132releng-armv7-quarterly-job-05] `-- Extracting pango-1.50.14: .......... done [132releng-armv7-quarterly-job-05] `-- Installing tcl86-8.6.13... [132releng-armv7-quarterly-job-05] `-- Extracting tcl86-8.6.13: .......... done [132releng-armv7-quarterly-job-05] `-- Installing tk86-8.6.13... [132releng-armv7-quarterly-job-05] `-- Extracting tk86-8.6.13: .......... done [132releng-armv7-quarterly-job-05] Extracting R-4.3.2_1: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ===== Message from python39-3.9.18: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===== Message from gcc12-12.2.0_7: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from ghostscript10-10.02.1_1: -- This package installs a script named dvipdf that depends on dvips. If you want to use this script you need to install print/tex-dvipsk. ===== Message from libthai-0.1.29: -- ===> NOTICE: The libthai port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> R-cran-rJava-1.0.10 depends on file: /usr/local/bin/R - found ===> Returning to build of R-cran-rJava-1.0.10 ===> R-cran-rJava-1.0.10 depends on executable: gfortran12 - found ===> R-cran-rJava-1.0.10 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> R-cran-rJava-1.0.10 depends on shared library: libicuuc.so - found (/usr/local/lib/libicuuc.so) ===> R-cran-rJava-1.0.10 depends on shared library: libpcre2-8.so - found (/usr/local/lib/libpcre2-8.so) =========================================================================== =======================<phase: configure >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for R-cran-rJava-1.0.10 /usr/local/bin/R CMD javareconf -e exit Java interpreter : /usr/local/bin/java Java version : 1.8.0_392 Java home path : /usr/local/openjdk8/jre Java compiler : /usr/local/bin/javac Java headers gen.: /usr/local/bin/javah Java archive tool: /usr/local/bin/jar trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/freebsd detected JNI linker flags : -L$(JAVA_HOME)/lib/arm/server -ljvm -lpthread using C compiler: 'FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c)' gmake[1]: Entering directory '/tmp/Rjavareconf.zd1cWb' cc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/openjdk8/jre/../include -I/usr/local/openjdk8/jre/../include/freebsd -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c conftest.c -o conftest.o cc -shared -L/usr/local/lib/R/lib -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -L/usr/local/lib -fstack-protector-strong -o conftest.so conftest.o -L/usr/local/openjdk8/jre/lib/arm/server -ljvm -lpthread -L/usr/local/lib/R/lib -lR gmake[1]: Leaving directory '/tmp/Rjavareconf.zd1cWb' The following Java variables have been exported: JAVA_HOME JAVA JAVAC JAVAH JAR JAVA_LIBS JAVA_CPPFLAGS JAVA_LD_LIBRARY_PATH Running: exit =========================================================================== =======================<phase: build >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =======================<phase: run-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> R-cran-rJava-1.0.10 depends on file: /usr/local/openjdk8/bin/java - found ===> R-cran-rJava-1.0.10 depends on file: /usr/local/bin/R - found ===> R-cran-rJava-1.0.10 depends on executable: gfortran12 - found =========================================================================== =======================<phase: stage >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for R-cran-rJava-1.0.10 ===> Generating temporary packing list * installing *source* package 'rJava' ... ** package 'rJava' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether time.h and sys/time.h may both be included... yes configure: checking whether cc supports static inline... yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking Java support in R... present: interpreter : '/usr/local/openjdk8/bin/java' archiver : '/usr/local/openjdk8/bin/jar' compiler : '/usr/local/openjdk8/bin/javac' header prep.: '/usr/local/openjdk8/bin/javah' cpp flags : '-I/usr/local/openjdk8/jre/../include -I/usr/local/openjdk8/jre/../include/freebsd' java libs : '-Wl,-rpath=/usr/local/openjdk8/jre/lib/armv7/server -L/usr/local/openjdk8/jre/lib/armv7/server -ljvm -lpthread' checking whether Java run-time works... yes checking whether -Xrs is supported... yes checking whether -Xrs will be used... yes checking whether JVM will be loaded dynamically... no checking whether JNI programs can be compiled... configure: error: Cannot compile a simple JNI program. See config.log for details. Make sure you have Java Development Kit installed and correctly registered in R. If in doubt, re-run "R CMD javareconf" as root. ERROR: configuration failed for package 'rJava' * removing '/wrkdirs/usr/ports/devel/R-cran-rJava/work/stage/usr/local/lib/R/library/rJava' *** Error code 1 Stop. make: stopped in /usr/ports/devel/R-cran-rJava