[package - main-amd64-default][science/afni] Failed for afni-24.1.16 in build
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Date: Fri, 07 Jun 2024 11:49:55 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: fernape@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/p3905913943f0_sc70c791f066/logs/afni-24.1.16.log
Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=p3905913943f0_sc70c791f066
Log:
=>> Building science/afni
build started at Fri Jun 7 11:30:53 UTC 2024
port directory: /usr/ports/science/afni
package name: afni-24.1.16
building for: FreeBSD main-amd64-default-job-01 15.0-CURRENT FreeBSD 15.0-CURRENT 1500019 amd64
maintained by: fernape@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 4854 Jun 6 01:01 /usr/ports/science/afni/Makefile
Ports top last git commit: 3905913943f
Ports top unclean checkout: no
Port dir last git commit: 546edd7b56b
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-30-g79e3edcd
Host OSVERSION: 1500018
Jail OSVERSION: 1500019
Job Id: 01
!!! Jail is newer than host. (Jail: 1500019, Host: 1500018) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
OSVERSION=1500019
UNAME_v=FreeBSD 15.0-CURRENT 1500019
UNAME_r=15.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.1-30-g79e3edcd
MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/main-amd64-default/01/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=main-amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.1-30-g79e3edcd
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for afni-24.1.16:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
fernape@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/afni/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/afni/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/afni/work/.cache HOME=/wrkdirs/usr/ports/science/afni/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/afni/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/afni/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
CC="cc" R_SHARE_DIR=/usr/local/lib/R/share MOTIFLIB="-L/usr/local/lib -lXm" PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/afni/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/afni/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/afni/work/.cache HOME=/wrkdirs/usr/ports/science/afni/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/afni/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/afni/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-DLIBICONV_PLUG -I/usr/local/include" LDFLAGS=" -L/usr/local/lib -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fcomm
on -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -DLIBICONV_PLUG " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTDOCS="" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" GTK4_VERSION="4.0.0" PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/afni" EXAMPLESDIR="share/examples/afni" DATADIR="share/afni" WWWDIR="www/afni" ETCDIR="etc/afni"
--End PLIST_SUB--
--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/afni DOCSDIR=/usr/local/share/doc/afni EXAMPLESDIR=/usr/local/share/examples/afni WWWDIR=/usr/local/www/afni ETCDIR=/usr/local/etc/afni
--End SUB_LIST--
---Begin make.conf---
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> afni-24.1.16 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[main-amd64-default-job-01] Installing pkg-1.21.3...
[main-amd64-default-job-01] Extracting pkg-1.21.3: .......... done
===> afni-24.1.16 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of afni-24.1.16
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
=> afni-afni-AFNI_24.1.16_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/afni/afni/tar.gz/AFNI_24.1.16?dummy=/afni-afni-AFNI_24.1.16_GH0.tar.gz
fetch: https://codeload.github.com/afni/afni/tar.gz/AFNI_24.1.16?dummy=/afni-afni-AFNI_24.1.16_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/afni/afni/tar.gz/AFNI_24.1.16?dummy=/afni-afni-AFNI_24.1.16_GH0.tar.gz: size of remote file is not known
afni-afni-AFNI_24.1.16_GH0.tar.gz 50 MB 13 MBps 04s
===> Fetching all distfiles required by afni-24.1.16 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by afni-24.1.16 for building
=> SHA256 Checksum OK for afni-afni-AFNI_24.1.16_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by afni-24.1.16 for building
===> Extracting for afni-24.1.16
=> SHA256 Checksum OK for afni-afni-AFNI_24.1.16_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for afni-24.1.16
===> Applying FreeBSD patches for afni-24.1.16 from /usr/ports/science/afni/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> afni-24.1.16 depends on executable: gm4 - not found
<snip>
170 | #define HUGE MAXFLOAT
| ^
SUMA_clippingPlanes.c:1602:84: warning: format specifies type 'wchar_t *' (aka 'int *') but the argument has type 'char **' [-Wformat]
1602 | fprintf(stderr, "### Darken clipping plane square: Cmp cname = %ls\n", Cmp->cname);
| ~~~ ^~~~~~~~~~
2 warnings generated.
cc -O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -DSUMA_COMPILED -IGLw_local -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -IGLUT -I../f2c -I.. -I../niml -I../coxplot -I../ptaylor -c SUMA_MiscFunc.c
SUMA_MiscFunc.c:3727:40: warning: if statement has empty body [-Wempty-body]
3727 | if (title[strlen(title)] != '\n'); fprintf(out,"\n");
| ^
SUMA_MiscFunc.c:3727:40: note: put the semicolon on a separate line to silence this warning
1 warning generated.
cc -O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -DSUMA_COMPILED -IGLw_local -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -IGLUT -I../f2c -I.. -I../niml -I../coxplot -I../ptaylor -c SUMA_IV_XYZextract.c
cc -O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -DSUMA_COMPILED -IGLw_local -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -IGLUT -I../f2c -I.. -I../niml -I../coxplot -I../ptaylor -c SUMA_IV_FaceSetsextract.c
cc -O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -DSUMA_COMPILED -IGLw_local -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -IGLUT -I../f2c -I.. -I../niml -I../coxplot -I../ptaylor -c SUMA_SurfNorm.c
cc -O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -DSUMA_COMPILED -IGLw_local -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -IGLUT -I../f2c -I.. -I../niml -I../coxplot -I../ptaylor -c SUMA_DOmanip.c
SUMA_DOmanip.c:2807:32: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
2807 | if ( (SO1->Side == SO2->Side) ) {
| ~~~~~~~~~~^~~~~~~~~~~~
SUMA_DOmanip.c:2807:32: note: remove extraneous parentheses around the comparison to silence this warning
2807 | if ( (SO1->Side == SO2->Side) ) {
| ~ ^ ~
SUMA_DOmanip.c:2807:32: note: use '=' to turn this equality comparison into an assignment
2807 | if ( (SO1->Side == SO2->Side) ) {
| ^~
| =
SUMA_DOmanip.c:4370:14: warning: logical not is only applied to the left hand side of this comparison [-Wlogical-not-parentheses]
4370 | if (!cb->active < 1) {
| ^ ~
SUMA_DOmanip.c:4370:14: note: add parentheses after the '!' to evaluate the comparison first
4370 | if (!cb->active < 1) {
| ^
| ( )
SUMA_DOmanip.c:4370:14: note: add parentheses around left hand side expression to silence this warning
4370 | if (!cb->active < 1) {
| ^
| ( )
SUMA_DOmanip.c:4934:19: warning: passing arguments to a function without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
4934 | cb->FunctionPtr((void *)cb);
| ^
3 warnings generated.
cc -O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -DSUMA_COMPILED -IGLw_local -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -IGLUT -I../f2c -I.. -I../niml -I../coxplot -I../ptaylor -c SUMA_Load_Surface_Object.c
SUMA_Load_Surface_Object.c:4327:47: warning: implicit conversion from enumeration type 'SUMA_DO_CoordType' to different enumeration type 'SUMA_DO_CoordUnits' [-Wenum-conversion]
4327 | SUMA_LoadVolDO (Spec->DO_name[i], SUMA_WORLD, NULL,1);
| ~~~~~~~~~~~~~~ ^~~~~~~~~~
SUMA_Load_Surface_Object.c:4339:31: warning: implicit conversion from enumeration type 'SUMA_DO_CoordType' to different enumeration type 'SUMA_DO_CoordUnits' [-Wenum-conversion]
4338 | SUMA_LoadCIFTIDO (Spec->DO_name[i],
| ~~~~~~~~~~~~~~~~
4339 | SUMA_WORLD, NULL, 1, 1, 1, 1, NULL);
| ^~~~~~~~~~
2 warnings generated.
cc -O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -DSUMA_COMPILED -IGLw_local -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -IGLUT -I../f2c -I.. -I../niml -I../coxplot -I../ptaylor -c SUMA_CreateDO.c
SUMA_CreateDO.c:3911:36: warning: implicit conversion from 'long' to 'float' changes value from 2000000000000 to 1999999991808 [-Wimplicit-const-int-float-conversion]
3911 | here[0] = here[2] = here[4] = 2000000000000;
| ~ ^~~~~~~~~~~~~
SUMA_CreateDO.c:3912:35: warning: implicit conversion from 'long' to 'float' changes value from -2000000000000 to -1999999991808 [-Wimplicit-const-int-float-conversion]
3912 | here[1] = here[3] = here[5] = -2000000000000;
| ~ ^~~~~~~~~~~~~~
SUMA_CreateDO.c:4039:36: warning: implicit conversion from 'long' to 'float' changes value from 2000000000000 to 1999999991808 [-Wimplicit-const-int-float-conversion]
4039 | here[0] = here[2] = here[4] = 2000000000000;
| ~ ^~~~~~~~~~~~~
SUMA_CreateDO.c:4040:35: warning: implicit conversion from 'long' to 'float' changes value from -2000000000000 to -1999999991808 [-Wimplicit-const-int-float-conversion]
4040 | here[1] = here[3] = here[5] = -2000000000000;
| ~ ^~~~~~~~~~~~~~
SUMA_CreateDO.c:4082:36: warning: implicit conversion from 'long' to 'float' changes value from 2000000000000 to 1999999991808 [-Wimplicit-const-int-float-conversion]
4082 | here[0] = here[2] = here[4] = 2000000000000;
| ~ ^~~~~~~~~~~~~
SUMA_CreateDO.c:4083:35: warning: implicit conversion from 'long' to 'float' changes value from -2000000000000 to -1999999991808 [-Wimplicit-const-int-float-conversion]
4083 | here[1] = here[3] = here[5] = -2000000000000;
| ~ ^~~~~~~~~~~~~~
SUMA_CreateDO.c:4240:36: warning: implicit conversion from 'long' to 'float' changes value from 2000000000000 to 1999999991808 [-Wimplicit-const-int-float-conversion]
4240 | here[0] = here[2] = here[4] = 2000000000000;
| ~ ^~~~~~~~~~~~~
SUMA_CreateDO.c:4241:35: warning: implicit conversion from 'long' to 'float' changes value from -2000000000000 to -1999999991808 [-Wimplicit-const-int-float-conversion]
4241 | here[1] = here[3] = here[5] = -2000000000000;
| ~ ^~~~~~~~~~~~~~
8 warnings generated.
cc -O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -DSUMA_COMPILED -IGLw_local -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -IGLUT -I../f2c -I.. -I../niml -I../coxplot -I../ptaylor -c SUMA_help.c
cc -O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -DSUMA_COMPILED -IGLw_local -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -IGLUT -I../f2c -I.. -I../niml -I../coxplot -I../ptaylor -c SUMA_display.c
SUMA_display.c:3421:17: warning: passing arguments to a function without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
3421 | CBp->callback(NULL, (XtPointer)CBp, NULL);
| ^
SUMA_display.c:14473:8: warning: logical not is only applied to the left hand side of this comparison [-Wlogical-not-parentheses]
14473 | if (!DrawnROI->DrawStatus == SUMA_ROI_Finished) {
| ^ ~~
SUMA_display.c:14473:8: note: add parentheses after the '!' to evaluate the comparison first
14473 | if (!DrawnROI->DrawStatus == SUMA_ROI_Finished) {
| ^
| ( )
SUMA_display.c:14473:8: note: add parentheses around left hand side expression to silence this warning
14473 | if (!DrawnROI->DrawStatus == SUMA_ROI_Finished) {
| ^
| ( )
2 warnings generated.
cc -O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -DSUMA_COMPILED -IGLw_local -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -IGLUT -I../f2c -I.. -I../niml -I../coxplot -I../ptaylor -c SUMA_display_b.c
SUMA_display_b.c:2601:43: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2601 | } else if (SurfCont->DeleteMask_row = -1) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
SUMA_display_b.c:2601:43: note: place parentheses around the assignment to silence this warning
2601 | } else if (SurfCont->DeleteMask_row = -1) {
| ^
| ( )
SUMA_display_b.c:2601:43: note: use '==' to turn this assignment into an equality comparison
2601 | } else if (SurfCont->DeleteMask_row = -1) {
| ^
| ==
SUMA_display_b.c:2644:15: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2644 | if (ado = SUMA_whichADOg(ado_id)) {
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
SUMA_display_b.c:2644:15: note: place parentheses around the assignment to silence this warning
2644 | if (ado = SUMA_whichADOg(ado_id)) {
| ^
| ( )
SUMA_display_b.c:2644:15: note: use '==' to turn this assignment into an equality comparison
2644 | if (ado = SUMA_whichADOg(ado_id)) {
| ^
| ==
SUMA_display_b.c:2781:12: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2781 | if (ado = SUMA_whichADOg(ado_id)) {
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
SUMA_display_b.c:2781:12: note: place parentheses around the assignment to silence this warning
2781 | if (ado = SUMA_whichADOg(ado_id)) {
| ^
| ( )
SUMA_display_b.c:2781:12: note: use '==' to turn this assignment into an equality comparison
2781 | if (ado = SUMA_whichADOg(ado_id)) {
| ^
| ==
3 warnings generated.
cc -O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -DSUMA_COMPILED -IGLw_local -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -IGLUT -I../f2c -I.. -I../niml -I../coxplot -I../ptaylor -c SUMA_ParseCommands.c
SUMA_ParseCommands.c:287:27: warning: implicit conversion from enumeration type 'SUMA_ENGINE_CODE' to different enumeration type 'SUMA_NI_COMMAND_CODE' [-Wenum-conversion]
287 | if (!Scom) SUMA_RETURN(SE_BadCode);
| ~~~~~~~~~~~~^~~~~~~~~~~
../suma_objs.h:39:25: note: expanded from macro 'SUMA_RETURN'
39 | #define SUMA_RETURN RETURN
| ^
../debugtrace.h:427:45: note: expanded from macro 'RETURN'
427 | #define RETURN(val) do{ DBEXIT ; return (val) ; } while(0)
| ~~~~~~ ^~~
SUMA_ParseCommands.c:1297:26: warning: implicit conversion from enumeration type 'SUMA_ENGINE_SOURCE' to different enumeration type 'SUMA_ENGINE_CODE' [-Wenum-conversion]
1297 | SUMA_ENGINE_CODE Dest=SES_Empty;
| ~~~~ ^~~~~~~~~
2 warnings generated.
cc -O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -DSUMA_COMPILED -IGLw_local -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -IGLUT -I../f2c -I.. -I../niml -I../coxplot -I../ptaylor -c SUMA_Engine.c
cc -O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -DSUMA_COMPILED -IGLw_local -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -IGLUT -I../f2c -I.. -I../niml -I../coxplot -I../ptaylor -c SUMA_Surface_IO.c
SUMA_Surface_IO.c:3253:12: warning: address of array 'FS->comment' will always evaluate to 'true' [-Wpointer-bool-conversion]
3253 | if (FS->comment) fprintf (Out, "Comment: %s\n", FS->comment);
| ~~ ~~~~^~~~~~~
SUMA_Surface_IO.c:4655:13: warning: 'snprintf' will always be truncated; specified size is 80, but format string expands to at least 81 [-Wformat-truncation]
4655 | snprintf(dhead,80,"%-80s",dummy);
| ^
2 warnings generated.
cc -O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -DSUMA_COMPILED -IGLw_local -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -IGLUT -I../f2c -I.. -I../niml -I../coxplot -I../ptaylor -c SUMA_VolData.c
cc -O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -DSUMA_COMPILED -IGLw_local -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -IGLUT -I../f2c -I.. -I../niml -I../coxplot -I../ptaylor -c SUMA_niml.c
SUMA_niml.c:243:16: warning: 'snprintf' will always be truncated; specified size is 255, but format string expands to at least 580 [-Wformat-truncation]
243 | SUMA_SLP_Note(
| ^
./SUMA_ParseCommands.h:480:4: note: expanded from macro 'SUMA_SLP_Note'
480 | snprintf(m_stemp, 255, __VA_ARGS__); \
| ^
1 warning generated.
cc -O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -DSUMA_COMPILED -IGLw_local -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -IGLUT -I../f2c -I.. -I../niml -I../coxplot -I../ptaylor -c SUMA_Color.c
SUMA_Color.c:8152:18: warning: comparison between pointer and integer ('SUMA_OVERLAYS **' and 'int') [-Wpointer-integer-compare]
8152 | if (Overlays == 0x1){
| ~~~~~~~~ ^ ~~~
SUMA_Color.c:8164:20: warning: comparison between pointer and integer ('SUMA_OVERLAYS **' and 'int') [-Wpointer-integer-compare]
8164 | if (Overlays == 0x1){
| ~~~~~~~~ ^ ~~~
SUMA_Color.c:11697:28: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
11697 | if (ss=NI_get_attribute(nilink,"network_file")) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SUMA_Color.c:11697:28: note: place parentheses around the assignment to silence this warning
11697 | if (ss=NI_get_attribute(nilink,"network_file")) {
| ^
| ( )
SUMA_Color.c:11697:28: note: use '==' to turn this assignment into an equality comparison
11697 | if (ss=NI_get_attribute(nilink,"network_file")) {
| ^
| ==
3 warnings generated.
cc -O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -DSUMA_COMPILED -IGLw_local -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -IGLUT -I../f2c -I.. -I../niml -I../coxplot -I../ptaylor -c SUMA_GeomComp.c
cc -O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -DSUMA_COMPILED -IGLw_local -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -IGLUT -I../f2c -I.. -I../niml -I../coxplot -I../ptaylor -c SUMA_SphericalMapping.c
cc -O2 -pipe -fcommon -Wno-incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DPIC -fPIC -DSUMA_COMPILED -IGLw_local -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -IGLUT -I../f2c -I.. -I../niml -I../coxplot -I../ptaylor -c SUMA_DataSets.c
In file included from SUMA_DataSets.c:11:
In file included from ../mrilib.h:1684:
In file included from ../3ddata.h:29:
../replaceXt.h:36:11: fatal error: 'X11/Intrinsic.h' file not found
36 | # include <X11/Intrinsic.h>
| ^~~~~~~~~~~~~~~~~
1 error generated.
gmake[1]: *** [SUMA_Makefile_NoDev:211: SUMA_DataSets.o] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-AFNI_24.1.16/src/SUMA'
cp: SUMA/libSUMA.a: No such file or directory
cp: SUMA/libSUMA.a: No such file or directory
gmake: *** [Makefile.INCLUDE:3843: libSUMA.a] Error 1
*** Error code 1
Stop.
make: stopped in /usr/ports/science/afni
unlink: ../../ref/.p/var/run/01_nohang.pid: Not a directory