[package - 140i386-default][science/octopus] Failed for octopus-13.0_3 in build
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Date: Thu, 25 Jul 2024 15:02:45 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy21/data/140i386-default/6e2f94a5f2a9/logs/octopus-13.0_3.log
Build URL: https://pkg-status.freebsd.org/beefy21/build.html?mastername=140i386-default&build=6e2f94a5f2a9
Log:
=>> Building science/octopus
build started at Thu Jul 25 14:58:23 UTC 2024
port directory: /usr/ports/science/octopus
package name: octopus-13.0_3
building for: FreeBSD 140i386-default-job-42 14.0-RELEASE-p8 FreeBSD 14.0-RELEASE-p8 i386
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 2199 Jul 11 01:01 /usr/ports/science/octopus/Makefile
Ports top last git commit: 6e2f94a5f2
Ports top unclean checkout: no
Port dir last git commit: 0056775fb9
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-30-g79e3edcd
Host OSVERSION: 1500019
Jail OSVERSION: 1400097
Job Id: 42
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---End Environment---
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PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for octopus-13.0_3:
OPENMP=on: Parallel processing support via OpenMP
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--enable-shared --disable-static --enable-openmp --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz" MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/octopus/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/octopus/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/octopus/work/.cache HOME=/wrkdirs/usr/ports/science/octopus/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/octopus/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/octopus/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/usr/local/bin/bash CONFIG_SHELL=/
usr/local/bin/bash ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--
--MAKE_ENV--
F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz" PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/octopus/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/octopus/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/octopus/work/.cache HOME=/wrkdirs/usr/ports/science/octopus/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/octopus/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/octopus/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/lo
cal/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lsymspg -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++14 " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/octopus" EXAMPLESDIR="share/examples/octopus" DATADIR="share/octopus" WWWDIR="www/octopus" ETCDIR="etc/octopus"
--End PLIST_SUB--
--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/octopus DOCSDIR=/usr/local/share/doc/octopus EXAMPLESDIR=/usr/local/share/examples/octopus WWWDIR=/usr/local/www/octopus ETCDIR=/usr/local/etc/octopus
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MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> octopus-13.0_3 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[140i386-default-job-42] Installing pkg-1.21.3...
[140i386-default-job-42] Extracting pkg-1.21.3: .......... done
===> octopus-13.0_3 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of octopus-13.0_3
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by octopus-13.0_3 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by octopus-13.0_3 for building
=> SHA256 Checksum OK for octopus-13.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by octopus-13.0_3 for building
===> Extracting for octopus-13.0_3
=> SHA256 Checksum OK for octopus-13.0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for octopus-13.0_3
===> Applying FreeBSD patches for octopus-13.0_3 from /usr/ports/science/octopus/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> octopus-13.0_3 depends on executable: bash - not found
===> Installing existing package /packages/All/bash-5.2.26_1.pkg
[140i386-default-job-42] Installing bash-5.2.26_1...
[140i386-default-job-42] `-- Installing gettext-runtime-0.22.5...
[140i386-default-job-42] | `-- Installing indexinfo-0.3.1...
[140i386-default-job-42] | `-- Extracting indexinfo-0.3.1: .... done
[140i386-default-job-42] `-- Extracting gettext-runtime-0.22.5: .......... done
[140i386-default-job-42] `-- Installing readline-8.2.10...
[140i386-default-job-42] `-- Extracting readline-8.2.10: .......... done
[140i386-default-job-42] Extracting bash-5.2.26_1: .......... done
===> octopus-13.0_3 depends on executable: bash - found
===> Returning to build of octopus-13.0_3
===> octopus-13.0_3 depends on executable: gfortran13 - not found
===> Installing existing package /packages/All/gcc13-13.2.0_4.pkg
[140i386-default-job-42] Installing gcc13-13.2.0_4...
[140i386-default-job-42] `-- Installing binutils-2.40_5,1...
[140i386-default-job-42] | `-- Installing zstd-1.5.6...
<snip>
^
4 warnings generated.
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o grid/mesh_partition.lo grid/mesh_partition_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c grid/mesh_partition_oct.f90 -fPIC -o grid/.libs/mesh_partition.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. grid/mesh_init.F90 | \
../scripts/preprocess.pl - \
"" "yes" > grid/mesh_init_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o grid/mesh_init.lo grid/mesh_init_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c grid/mesh_init_oct.f90 -fPIC -o grid/.libs/mesh_init.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. grid/symmetrizer.F90 | \
../scripts/preprocess.pl - \
"" "yes" > grid/symmetrizer_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o grid/symmetrizer.lo grid/symmetrizer_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c grid/symmetrizer_oct.f90 -fPIC -o grid/.libs/symmetrizer.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. basic/gdlib.F90 | \
../scripts/preprocess.pl - \
"" "yes" > basic/gdlib_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o basic/gdlib.lo basic/gdlib_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c basic/gdlib_oct.f90 -fPIC -o basic/.libs/gdlib.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. boxes/box_shape.F90 | \
../scripts/preprocess.pl - \
"" "yes" > boxes/box_shape_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o boxes/box_shape.lo boxes/box_shape_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c boxes/box_shape_oct.f90 -fPIC -o boxes/.libs/box_shape.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. boxes/box_image.F90 | \
../scripts/preprocess.pl - \
"" "yes" > boxes/box_image_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o boxes/box_image.lo boxes/box_image_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c boxes/box_image_oct.f90 -fPIC -o boxes/.libs/box_image.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. basic/lookup.F90 | \
../scripts/preprocess.pl - \
"" "yes" > basic/lookup_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o basic/lookup.lo basic/lookup_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c basic/lookup_oct.f90 -fPIC -o basic/.libs/lookup.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. boxes/box_minimum.F90 | \
../scripts/preprocess.pl - \
"" "yes" > boxes/box_minimum_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o boxes/box_minimum.lo boxes/box_minimum_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c boxes/box_minimum_oct.f90 -fPIC -o boxes/.libs/box_minimum.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. basic/cgal_polyhedra.F90 | \
../scripts/preprocess.pl - \
"" "yes" > basic/cgal_polyhedra_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o basic/cgal_polyhedra.lo basic/cgal_polyhedra_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c basic/cgal_polyhedra_oct.f90 -fPIC -o basic/.libs/cgal_polyhedra.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. boxes/box_cgal.F90 | \
../scripts/preprocess.pl - \
"" "yes" > boxes/box_cgal_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o boxes/box_cgal.lo boxes/box_cgal_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c boxes/box_cgal_oct.f90 -fPIC -o boxes/.libs/box_cgal.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. boxes/box_cylinder.F90 | \
../scripts/preprocess.pl - \
"" "yes" > boxes/box_cylinder_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o boxes/box_cylinder.lo boxes/box_cylinder_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c boxes/box_cylinder_oct.f90 -fPIC -o boxes/.libs/box_cylinder.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. boxes/box_sphere.F90 | \
../scripts/preprocess.pl - \
"" "yes" > boxes/box_sphere_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o boxes/box_sphere.lo boxes/box_sphere_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c boxes/box_sphere_oct.f90 -fPIC -o boxes/.libs/box_sphere.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. boxes/box_parallelepiped.F90 | \
../scripts/preprocess.pl - \
"" "yes" > boxes/box_parallelepiped_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o boxes/box_parallelepiped.lo boxes/box_parallelepiped_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c boxes/box_parallelepiped_oct.f90 -fPIC -o boxes/.libs/box_parallelepiped.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. boxes/box_user_defined.F90 | \
../scripts/preprocess.pl - \
"" "yes" > boxes/box_user_defined_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o boxes/box_user_defined.lo boxes/box_user_defined_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c boxes/box_user_defined_oct.f90 -fPIC -o boxes/.libs/box_user_defined.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. boxes/box_factory.F90 | \
../scripts/preprocess.pl - \
"" "yes" > boxes/box_factory_oct.f90
boxes/box_factory.F90:293:55: warning: empty character constant [-Winvalid-pp-token]
call parse_variable(namespace, 'BoxShapeImage', '', filename)
^
boxes/box_factory.F90:338:53: warning: empty character constant [-Winvalid-pp-token]
call parse_variable(namespace, 'BoxCgalFile', '', filename)
^
2 warnings generated.
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o boxes/box_factory.lo boxes/box_factory_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c boxes/box_factory_oct.f90 -fPIC -o boxes/.libs/box_factory.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. grid/curv_modine.F90 | \
../scripts/preprocess.pl - \
"" "yes" > grid/curv_modine_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o grid/curv_modine.lo grid/curv_modine_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c grid/curv_modine_oct.f90 -fPIC -o grid/.libs/curv_modine.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. math/fftw.F90 | \
../scripts/preprocess.pl - \
"" "yes" > math/fftw_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o math/fftw.lo math/fftw_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c math/fftw_oct.f90 -fPIC -o math/.libs/fftw.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. math/pfft.F90 | \
../scripts/preprocess.pl - \
"" "yes" > math/pfft_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o math/pfft.lo math/pfft_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c math/pfft_oct.f90 -fPIC -o math/.libs/pfft.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. math/pnfft.F90 | \
../scripts/preprocess.pl - \
"" "yes" > math/pnfft_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o math/pnfft.lo math/pnfft_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c math/pnfft_oct.f90 -fPIC -o math/.libs/pnfft.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. math/fft.F90 | \
../scripts/preprocess.pl - \
"" "yes" > math/fft_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o math/fft.lo math/fft_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c math/fft_oct.f90 -fPIC -o math/.libs/fft.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. grid/cube.F90 | \
../scripts/preprocess.pl - \
"" "yes" > grid/cube_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o grid/cube.lo grid/cube_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c grid/cube_oct.f90 -fPIC -o grid/.libs/cube.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. grid/grid.F90 | \
../scripts/preprocess.pl - \
"" "yes" > grid/grid_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o grid/grid.lo grid/grid_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c grid/grid_oct.f90 -fPIC -o grid/.libs/grid.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. states/states_elec.F90 | \
../scripts/preprocess.pl - \
"" "yes" > states/states_elec_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o states/states_elec.lo states/states_elec_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c states/states_elec_oct.f90 -fPIC -o states/.libs/states_elec.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. ions/atom.F90 | \
../scripts/preprocess.pl - \
"" "yes" > ions/atom_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o ions/atom.lo ions/atom_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c ions/atom_oct.f90 -fPIC -o ions/.libs/atom.o
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. basic/io_csv_f.F90 | \
../scripts/preprocess.pl - \
"" "yes" > basic/io_csv_f_oct.f90
/usr/local/bin/bash ../libtool --tag=FC \
--mode=compile \
gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c -o basic/io_csv_f.lo basic/io_csv_f_oct.f90
libtool: compile: gfortran13 -I/usr/local/include -ffree-line-length-none -fallow-argument-mismatch -Wl,-rpath=/usr/local/lib/gcc13 -fallow-argument-mismatch -fallow-invalid-boz -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I /usr/include -I/usr/include -I/usr/include -I /usr/include -c basic/io_csv_f_oct.f90 -fPIC -o basic/.libs/io_csv_f.o
basic/io_csv_f.F90:79:46:
79 | call get_info_csv(dims, ierr, trim(fname))
| 1
Error: Type mismatch in argument 'dims' at (1); passed INTEGER(8) to INTEGER(4)
basic/io_csv_f.F90:57:50:
57 | call read_csv(np, ff(1), TYPE_DOUBLE, ierr, trim(fname))
| 1
Error: Type mismatch in argument 'np' at (1); passed INTEGER(8) to INTEGER(4)
gmake[2]: *** [Makefile:3397: basic/io_csv_f.lo] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/octopus/work/octopus-13.0/src'
gmake[1]: *** [Makefile:548: all-recursive] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/octopus/work/octopus-13.0'
gmake: *** [Makefile:480: all] Error 2
*** Error code 1
Stop.
make: stopped in /usr/ports/science/octopus