[package - 133releng-armv7-default][science/bagel] Failed for bagel-1.2.2.132_10 in build
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Date: Thu, 18 Jul 2024 21:27:23 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere3/data/133releng-armv7-default/fccd9b82b9eb/logs/bagel-1.2.2.132_10.log
Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=133releng-armv7-default&build=fccd9b82b9eb
Log:
=>> Building science/bagel
build started at Thu Jul 18 21:25:56 UTC 2024
port directory: /usr/ports/science/bagel
package name: bagel-1.2.2.132_10
building for: FreeBSD 133releng-armv7-default-job-01 13.3-RELEASE-p4 FreeBSD 13.3-RELEASE-p4 1303001 arm
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1846 Jun 27 01:08 /usr/ports/science/bagel/Makefile
Ports top last git commit: fccd9b82b9e
Ports top unclean checkout: no
Port dir last git commit: e2cd1133e68
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-30-g79e3edcd
Host OSVERSION: 1500019
Jail OSVERSION: 1303001
Job Id: 01
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---Begin OPTIONS List---
===> The following configuration options are available for bagel-1.2.2.132_10:
LIBXC=on: Build DFT with libxc
MPI=on: MPI (Message Passing Interface) support
SCALAPACK=on: Use ScaLapack library for parallelized linear algebra
SMITH=on: Compile SMITH generated code
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--datarootdir=/usr/local/share/bagel --with-libxc --with-mpi=openmpi --enable-scalapack --enable-smith --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" MAKE=gmake PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/bagel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/bagel/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/bagel/work/.cache HOME=/wrkdirs/usr/ports/science/bagel/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/bagel/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/bagel/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/
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--MAKE_ENV--
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--End MAKE_ENV--
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PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
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MAKE_JOBS_NUMBER=3
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UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> bagel-1.2.2.132_10 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[133releng-armv7-default-job-01] Installing pkg-1.21.3...
[133releng-armv7-default-job-01] Extracting pkg-1.21.3: .......... done
===> bagel-1.2.2.132_10 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of bagel-1.2.2.132_10
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by bagel-1.2.2.132_10 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by bagel-1.2.2.132_10 for building
=> SHA256 Checksum OK for qsimulate-open-bagel-v1.2.2-132-g2955e4d1a_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by bagel-1.2.2.132_10 for building
===> Extracting for bagel-1.2.2.132_10
=> SHA256 Checksum OK for qsimulate-open-bagel-v1.2.2-132-g2955e4d1a_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for bagel-1.2.2.132_10
===> Applying FreeBSD patches for bagel-1.2.2.132_10 from /usr/ports/science/bagel/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> bagel-1.2.2.132_10 depends on executable: gfortran13 - not found
===> Installing existing package /packages/All/gcc13-13.2.0_4.pkg
[133releng-armv7-default-job-01] Installing gcc13-13.2.0_4...
[133releng-armv7-default-job-01] `-- Installing binutils-2.40_5,1...
[133releng-armv7-default-job-01] | `-- Installing gettext-runtime-0.22.5...
[133releng-armv7-default-job-01] | | `-- Installing indexinfo-0.3.1...
[133releng-armv7-default-job-01] | | `-- Extracting indexinfo-0.3.1: .... done
[133releng-armv7-default-job-01] | `-- Extracting gettext-runtime-0.22.5: .......... done
[133releng-armv7-default-job-01] | `-- Installing zstd-1.5.6...
[133releng-armv7-default-job-01] | | `-- Installing liblz4-1.9.4_1,1...
[133releng-armv7-default-job-01] | | `-- Extracting liblz4-1.9.4_1,1: .......... done
[133releng-armv7-default-job-01] | `-- Extracting zstd-1.5.6: .......... done
[133releng-armv7-default-job-01] `-- Extracting binutils-2.40_5,1: .......... done
<snip>
checking whether the Boost::Unit_Test_Framework library is available... yes
configure: WARNING: BOOST_CPPFLAGS -I/usr/local/include
checking whether the Boost::Serialization library is available... yes
checking for exit in -lboost_serialization... yes
checking for xc.h... yes
checking for main in -lxc... yes
checking for zgemm3m_... no
checking for mpi.h... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/util/Makefile
config.status: creating src/util/input/Makefile
config.status: creating src/util/io/Makefile
config.status: creating src/util/parallel/Makefile
config.status: creating src/util/math/Makefile
config.status: creating src/asd/multisite/Makefile
config.status: creating src/asd/dimer/Makefile
config.status: creating src/asd/dmrg/Makefile
config.status: creating src/asd/orbital/Makefile
config.status: creating src/asd/Makefile
config.status: creating src/wfn/Makefile
config.status: creating src/grad/Makefile
config.status: creating src/integral/Makefile
config.status: creating src/scf/Makefile
config.status: creating src/df/Makefile
config.status: creating src/prop/Makefile
config.status: creating src/smith/Makefile
config.status: creating src/molecule/Makefile
config.status: creating src/pt2/Makefile
config.status: creating src/ci/Makefile
config.status: creating src/ci/ciutil/Makefile
config.status: creating src/ci/fci/Makefile
config.status: creating src/ci/zfci/Makefile
config.status: creating src/ci/ras/Makefile
config.status: creating src/response/Makefile
config.status: creating src/multi/Makefile
config.status: creating src/multi/casscf/Makefile
config.status: creating src/multi/zcasscf/Makefile
config.status: creating src/mat1e/Makefile
config.status: creating src/opt/Makefile
config.status: creating src/basis/Makefile
config.status: creating bagel_config.h
config.status: executing depfiles commands
config.status: executing libtool commands
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for bagel-1.2.2.132_10
gmake all-recursive
gmake[1]: Entering directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2-132-g2955e4d1a'
Making all in src
gmake[2]: Entering directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2-132-g2955e4d1a/src'
Making all in util
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2-132-g2955e4d1a/src/util'
Making all in parallel
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2-132-g2955e4d1a/src/util/parallel'
/bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT process.lo -MD -MP -MF .deps/process.Tpo -c -o process.lo process.cc
/bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT mpi_interface.lo -MD -MP -MF .deps/mpi_interface.Tpo -c -o mpi_interface.lo mpi_interface.cc
/bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT rmawindow.lo -MD -MP -MF .deps/rmawindow.Tpo -c -o rmawindow.lo rmawindow.cc
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT process.lo -MD -MP -MF .deps/process.Tpo -c process.cc -fPIC -DPIC -o .libs/process.o
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT rmawindow.lo -MD -MP -MF .deps/rmawindow.Tpo -c rmawindow.cc -fPIC -DPIC -o .libs/rmawindow.o
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT mpi_interface.lo -MD -MP -MF .deps/mpi_interface.Tpo -c mpi_interface.cc -fPIC -DPIC -o .libs/mpi_interface.o
rmawindow.cc:270:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
270 | out = make_shared<RMATask<DataType>>(move(req));
| ^
| std::
rmawindow.cc:291:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
291 | out = make_shared<RMATask<DataType>>(move(req), move(buf));
| ^
| std::
rmawindow.cc:304:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
304 | out = make_shared<RMATask<DataType>>(move(req));
| ^
| std::
rmawindow.cc:317:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
317 | out = make_shared<RMATask<DataType>>(move(req));
| ^
| std::
rmawindow.cc:280:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
280 | return rma_radd(move(buf), rank, off, size);
| ^
| std::
rmawindow.cc:345:23: note: in instantiation of member function 'bagel::RMAWindow<double>::rma_radd' requested here
345 | template class bagel::RMAWindow<double>;
| ^
rmawindow.cc:291:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
291 | out = make_shared<RMATask<DataType>>(move(req), move(buf));
| ^
| std::
rmawindow.cc:345:23: note: in instantiation of member function 'bagel::RMAWindow<double>::rma_radd' requested here
345 | template class bagel::RMAWindow<double>;
| ^
rmawindow.cc:291:51: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
291 | out = make_shared<RMATask<DataType>>(move(req), move(buf));
| ^
| std::
rmawindow.cc:270:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
270 | out = make_shared<RMATask<DataType>>(move(req));
| ^
| std::
rmawindow.cc:345:23: note: in instantiation of member function 'bagel::RMAWindow<double>::rma_rget' requested here
345 | template class bagel::RMAWindow<double>;
| ^
rmawindow.cc:304:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
304 | out = make_shared<RMATask<DataType>>(move(req));
| ^
| std::
rmawindow.cc:345:23: note: in instantiation of member function 'bagel::RMAWindow<double>::rma_rput' requested here
345 | template class bagel::RMAWindow<double>;
| ^
rmawindow.cc:317:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
317 | out = make_shared<RMATask<DataType>>(move(req));
| ^
| std::
rmawindow.cc:345:23: note: in instantiation of member function 'bagel::RMAWindow<double>::rma_radd' requested here
345 | template class bagel::RMAWindow<double>;
| ^
rmawindow.cc:280:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
280 | return rma_radd(move(buf), rank, off, size);
| ^
| std::
rmawindow.cc:346:23: note: in instantiation of member function 'bagel::RMAWindow<std::complex<double>>::rma_radd' requested here
346 | template class bagel::RMAWindow<complex<double>>;
| ^
rmawindow.cc:291:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
291 | out = make_shared<RMATask<DataType>>(move(req), move(buf));
| ^
| std::
rmawindow.cc:346:23: note: in instantiation of member function 'bagel::RMAWindow<std::complex<double>>::rma_radd' requested here
346 | template class bagel::RMAWindow<complex<double>>;
| ^
rmawindow.cc:291:51: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
291 | out = make_shared<RMATask<DataType>>(move(req), move(buf));
| ^
| std::
rmawindow.cc:270:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
270 | out = make_shared<RMATask<DataType>>(move(req));
| ^
| std::
rmawindow.cc:346:23: note: in instantiation of member function 'bagel::RMAWindow<std::complex<double>>::rma_rget' requested here
346 | template class bagel::RMAWindow<complex<double>>;
| ^
rmawindow.cc:304:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
304 | out = make_shared<RMATask<DataType>>(move(req));
| ^
| std::
rmawindow.cc:346:23: note: in instantiation of member function 'bagel::RMAWindow<std::complex<double>>::rma_rput' requested here
346 | template class bagel::RMAWindow<complex<double>>;
| ^
rmawindow.cc:317:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
317 | out = make_shared<RMATask<DataType>>(move(req));
| ^
| std::
rmawindow.cc:346:23: note: in instantiation of member function 'bagel::RMAWindow<std::complex<double>>::rma_radd' requested here
346 | template class bagel::RMAWindow<complex<double>>;
| ^
mv -f .deps/process.Tpo .deps/process.Plo
/bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT resources.lo -MD -MP -MF .deps/resources.Tpo -c -o resources.lo resources.cc
mpi_interface.cc:149:17: error: static assertion failed due to requirement 'sizeof(unsigned int) == sizeof(unsigned long long)': size_t is assumed to be the same size as unsigned long long
149 | static_assert(sizeof(size_t) == sizeof(unsigned long long), "size_t is assumed to be the same size as unsigned long long");
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mpi_interface.cc:149:32: note: expression evaluates to '4 == 8'
149 | static_assert(sizeof(size_t) == sizeof(unsigned long long), "size_t is assumed to be the same size as unsigned long long");
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mpi_interface.cc:202:17: error: static assertion failed due to requirement 'sizeof(unsigned int) == sizeof(unsigned long long)': size_t is assumed to be the same size as unsigned long long
202 | static_assert(sizeof(size_t) == sizeof(unsigned long long), "size_t is assumed to be the same size as unsigned long long");
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mpi_interface.cc:202:32: note: expression evaluates to '4 == 8'
202 | static_assert(sizeof(size_t) == sizeof(unsigned long long), "size_t is assumed to be the same size as unsigned long long");
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT resources.lo -MD -MP -MF .deps/resources.Tpo -c resources.cc -fPIC -DPIC -o .libs/resources.o
mpi_interface.cc:268:17: error: static assertion failed due to requirement 'sizeof(unsigned int) == sizeof(unsigned long long)': size_t is assumed to be the same size as unsigned long long
268 | static_assert(sizeof(size_t) == sizeof(unsigned long long), "size_t is assumed to be the same size as unsigned long long");
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mpi_interface.cc:268:32: note: expression evaluates to '4 == 8'
268 | static_assert(sizeof(size_t) == sizeof(unsigned long long), "size_t is assumed to be the same size as unsigned long long");
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3 errors generated.
gmake[4]: *** [Makefile:405: mpi_interface.lo] Error 1
gmake[4]: *** Waiting for unfinished jobs....
16 warnings generated.
mv -f .deps/rmawindow.Tpo .deps/rmawindow.Plo
mv -f .deps/resources.Tpo .deps/resources.Plo
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2-132-g2955e4d1a/src/util/parallel'
gmake[3]: *** [Makefile:463: all-recursive] Error 1
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2-132-g2955e4d1a/src/util'
gmake[2]: *** [Makefile:642: all-recursive] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2-132-g2955e4d1a/src'
gmake[1]: *** [Makefile:424: all-recursive] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2-132-g2955e4d1a'
gmake: *** [Makefile:356: all] Error 2
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/bagel