[exp - 140amd64-default-build-as-user][science/py-dwave-preprocessing] Failed for py311-dwave-preprocessing-0.6.5 in configure
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Date: Mon, 15 Jul 2024 21:24:28 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/package19/data/140amd64-default-build-as-user/e65776ce3703/logs/py311-dwave-preprocessing-0.6.5.log
Build URL: https://pkg-status.freebsd.org/package19/build.html?mastername=140amd64-default-build-as-user&build=e65776ce3703
Log:
=>> Building science/py-dwave-preprocessing
build started at Mon Jul 15 21:24:11 UTC 2024
port directory: /usr/ports/science/py-dwave-preprocessing
package name: py311-dwave-preprocessing-0.6.5
building for: FreeBSD 140amd64-default-build-as-user-job-06 14.0-RELEASE-p8 FreeBSD 14.0-RELEASE-p8 amd64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1355 Jan 23 00:02 /usr/ports/science/py-dwave-preprocessing/Makefile
Ports top last git commit: e65776ce370
Ports top unclean checkout: no
Port dir last git commit: aa6ecd44406
Port dir unclean checkout: no
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yuri@FreeBSD.org
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=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534
===> License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-dwave-preprocessing-0.6.5 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[140amd64-default-build-as-user-job-06] Installing pkg-1.21.3...
[140amd64-default-build-as-user-job-06] Extracting pkg-1.21.3: .......... done
===> py311-dwave-preprocessing-0.6.5 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py311-dwave-preprocessing-0.6.5
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by py311-dwave-preprocessing-0.6.5 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by py311-dwave-preprocessing-0.6.5 for building
=> SHA256 Checksum OK for dwavesystems-dwave-preprocessing-0.6.5_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by py311-dwave-preprocessing-0.6.5 for building
===> Extracting for py311-dwave-preprocessing-0.6.5
=> SHA256 Checksum OK for dwavesystems-dwave-preprocessing-0.6.5_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534
===> Patching for py311-dwave-preprocessing-0.6.5
===> Applying FreeBSD patches for py311-dwave-preprocessing-0.6.5 from /usr/ports/science/py-dwave-preprocessing/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-dwave-preprocessing-0.6.5 depends on package: py311-dimod>=0.12.14 - not found
===> Installing existing package /packages/All/py311-dimod-0.12.16.pkg
[140amd64-default-build-as-user-job-06] Installing py311-dimod-0.12.16...
[140amd64-default-build-as-user-job-06] `-- Installing py311-numpy-1.26.4_1,1...
[140amd64-default-build-as-user-job-06] | `-- Installing gcc13-13.2.0_4...
[140amd64-default-build-as-user-job-06] | | `-- Installing binutils-2.40_5,1...
[140amd64-default-build-as-user-job-06] | | `-- Installing gettext-runtime-0.22.5...
[140amd64-default-build-as-user-job-06] | | | `-- Installing indexinfo-0.3.1...
[140amd64-default-build-as-user-job-06] | | | `-- Extracting indexinfo-0.3.1: .... done
[140amd64-default-build-as-user-job-06] | | `-- Extracting gettext-runtime-0.22.5: .......... done
[140amd64-default-build-as-user-job-06] | | `-- Installing zstd-1.5.6...
[140amd64-default-build-as-user-job-06] | | | `-- Installing liblz4-1.9.4_1,1...
[140amd64-default-build-as-user-job-06] | | | `-- Extracting liblz4-1.9.4_1,1: .......... done
[140amd64-default-build-as-user-job-06] | | `-- Extracting zstd-1.5.6: .......... done
[140amd64-default-build-as-user-job-06] | | `-- Extracting binutils-2.40_5,1: .......... done
[140amd64-default-build-as-user-job-06] | | `-- Installing gmp-6.3.0...
[140amd64-default-build-as-user-job-06] | | `-- Extracting gmp-6.3.0: .......... done
[140amd64-default-build-as-user-job-06] | | `-- Installing mpc-1.3.1_1...
[140amd64-default-build-as-user-job-06] | | `-- Installing mpfr-4.2.1,1...
[140amd64-default-build-as-user-job-06] | | `-- Extracting mpfr-4.2.1,1: .......... done
[140amd64-default-build-as-user-job-06] | | `-- Extracting mpc-1.3.1_1: ......... done
[140amd64-default-build-as-user-job-06] | `-- Extracting gcc13-13.2.0_4: .......... done
[140amd64-default-build-as-user-job-06] | `-- Installing openblas-0.3.27,2...
[140amd64-default-build-as-user-job-06] | `-- Extracting openblas-0.3.27,2: .......... done
[140amd64-default-build-as-user-job-06] | `-- Installing py311-setuptools-63.1.0_1...
[140amd64-default-build-as-user-job-06] | | `-- Installing python311-3.11.9_1...
[140amd64-default-build-as-user-job-06] | | `-- Installing libffi-3.4.6...
[140amd64-default-build-as-user-job-06] | | `-- Extracting libffi-3.4.6: .......... done
[140amd64-default-build-as-user-job-06] | | `-- Installing mpdecimal-4.0.0...
[140amd64-default-build-as-user-job-06] | | `-- Extracting mpdecimal-4.0.0: .......... done
[140amd64-default-build-as-user-job-06] | | `-- Installing readline-8.2.10...
[140amd64-default-build-as-user-job-06] | | `-- Extracting readline-8.2.10: .......... done
[140amd64-default-build-as-user-job-06] | | `-- Extracting python311-3.11.9_1: .......... done
[140amd64-default-build-as-user-job-06] | `-- Extracting py311-setuptools-63.1.0_1: .......... done
[140amd64-default-build-as-user-job-06] | `-- Installing suitesparse-umfpack-6.3.3_1...
[140amd64-default-build-as-user-job-06] | | `-- Installing suitesparse-amd-3.3.2...
[140amd64-default-build-as-user-job-06] | | `-- Installing suitesparse-config-7.7.0_1...
[140amd64-default-build-as-user-job-06] | | `-- Extracting suitesparse-config-7.7.0_1: .......... done
[140amd64-default-build-as-user-job-06] | | `-- Extracting suitesparse-amd-3.3.2: .......... done
[140amd64-default-build-as-user-job-06] | | `-- Installing suitesparse-camd-3.3.2...
[140amd64-default-build-as-user-job-06] | | `-- Extracting suitesparse-camd-3.3.2: .......... done
[140amd64-default-build-as-user-job-06] | | `-- Installing suitesparse-ccolamd-3.3.3...
[140amd64-default-build-as-user-job-06] | | `-- Extracting suitesparse-ccolamd-3.3.3: .......... done
[140amd64-default-build-as-user-job-06] | | `-- Installing suitesparse-cholmod-5.2.1_1...
[140amd64-default-build-as-user-job-06] | | `-- Installing suitesparse-colamd-3.3.3...
[140amd64-default-build-as-user-job-06] | | `-- Extracting suitesparse-colamd-3.3.3: .......... done
[140amd64-default-build-as-user-job-06] | | `-- Extracting suitesparse-cholmod-5.2.1_1: .......... done
[140amd64-default-build-as-user-job-06] | `-- Extracting suitesparse-umfpack-6.3.3_1: .......... done
[140amd64-default-build-as-user-job-06] `-- Extracting py311-numpy-1.26.4_1,1: .......... done
[140amd64-default-build-as-user-job-06] Extracting py311-dimod-0.12.16: .......... done
=====
Message from gcc13-13.2.0_4:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc13
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python311-3.11.9_1:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py311-gdbm databases/py-gdbm@py311
py311-sqlite3 databases/py-sqlite3@py311
py311-tkinter x11-toolkits/py-tkinter@py311
===> py311-dwave-preprocessing-0.6.5 depends on package: py311-dimod>=0.12.14 - found
===> Returning to build of py311-dwave-preprocessing-0.6.5
===> py311-dwave-preprocessing-0.6.5 depends on package: py311-numpy>=1.16,1<1.27,1 - found
===> py311-dwave-preprocessing-0.6.5 depends on package: py311-wheel>=0.30.0 - not found
===> Installing existing package /packages/All/py311-wheel-0.43.0.pkg
[140amd64-default-build-as-user-job-06] Installing py311-wheel-0.43.0...
[140amd64-default-build-as-user-job-06] Extracting py311-wheel-0.43.0: .......... done
===> py311-dwave-preprocessing-0.6.5 depends on package: py311-wheel>=0.30.0 - found
===> Returning to build of py311-dwave-preprocessing-0.6.5
===> py311-dwave-preprocessing-0.6.5 depends on executable: cython-3.11 - not found
===> Installing existing package /packages/All/py311-cython-0.29.37_1.pkg
[140amd64-default-build-as-user-job-06] Installing py311-cython-0.29.37_1...
[140amd64-default-build-as-user-job-06] Extracting py311-cython-0.29.37_1: .......... done
===> py311-dwave-preprocessing-0.6.5 depends on executable: cython-3.11 - found
===> Returning to build of py311-dwave-preprocessing-0.6.5
===> py311-dwave-preprocessing-0.6.5 depends on package: py311-setuptools>=63.1.0 - found
===> py311-dwave-preprocessing-0.6.5 depends on file: /usr/local/bin/python3.11 - found
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534
===> Configuring for py311-dwave-preprocessing-0.6.5
Error compiling Cython file:
------------------------------------------------------------
...
import dimod
from dimod.libcpp cimport ConstrainedQuadraticModel as cppConstrainedQuadraticModel
from dimod.constrained.cyconstrained cimport cyConstrainedQuadraticModel, make_cqm
from dimod.cyutilities cimport ConstNumeric
^
------------------------------------------------------------
dwave/preprocessing/presolve/cypresolve.pyx:30:0: 'dimod/cyutilities/ConstNumeric.pxd' not found
Error compiling Cython file:
------------------------------------------------------------
...
return changes
@cython.boundscheck(False)
@cython.wraparound(False)
def _restore_samples(self, ConstNumeric[:, ::1] samples):
^
------------------------------------------------------------
dwave/preprocessing/presolve/cypresolve.pyx:237:31: 'ConstNumeric' is not a type identifier
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "setup.py", line 56, in <module>
ext_modules=cythonize(
^^^^^^^^^^
File "/usr/local/lib/python3.11/site-packages/Cython/Build/Dependencies.py", line 1115, in cythonize
cythonize_one(*args)
File "/usr/local/lib/python3.11/site-packages/Cython/Build/Dependencies.py", line 1238, in cythonize_one
raise CompileError(None, pyx_file)
Cython.Compiler.Errors.CompileError: dwave/preprocessing/presolve/cypresolve.pyx
Compiling dwave/preprocessing/cyfix_variables.pyx because it changed.
Compiling dwave/preprocessing/presolve/cypresolve.pyx because it changed.
[1/2] Cythonizing dwave/preprocessing/cyfix_variables.pyx
[2/2] Cythonizing dwave/preprocessing/presolve/cypresolve.pyx
*** Error code 1
Stop.
make: stopped in /usr/ports/science/py-dwave-preprocessing