From nobody Mon Jul 08 22:43:02 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4WHzfb0x03z5QnQT for ; Mon, 08 Jul 2024 22:43:03 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R11" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4WHzfZ4K32z4sR1 for ; Mon, 8 Jul 2024 22:43:02 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1720478582; a=rsa-sha256; cv=none; b=VJxDv6Jt2q3y+tqv8p3eHoAWMDYEZSESShbp8+zxS14rdTxbHNgqWHctCcEWwsZKQtuVzs /zSNrUND4A2KGC7Kt7N63ztLFV2Cv9bxc4v6WE4E+EeHCXUmzXnd/UGgr3bRWofTbi5++n Xk12FKSprsvaKFlgnvlTyLIf/EgsY4j55IeSRklbertNaJ4f8A6XO/A4igvpBrcIhK4lZc cm6/qpgWNIznmgxovDMcQuWqys5BbvPQixUiBoZGCrUtPMT1p7K7sP7UBv2bMh/fn89vu6 THEB7b0rLRSAbEwmSR7Skwq1kX04H8X/ET5xLeZc3+yMaZzjUJHkoCUcUZ6/gA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1720478582; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=YGM17sTYBVNqrWc15myyGANs9bBUVj4iVLKPOpkBFmc=; b=d0RhAECnY2hJk/Sfedt3E1Qk9M6ZMezPM7YhhTI4HNodK4OXvyv2e3oO+YW7/klHvpz5nm uUJtoVz09NCFinvi6YHK5VTnMwAJRxHWmaf48EiBCYzaTAqUnTu0dYns2zDT6fEIneIT+u KDGxHZDXcP6sH+TlRRX4vN49PZEF20o0wHmcURHeFyxNGhsZAumv36w34Xj1m0Xlesxpun VDy01+p8s04t1otDBZ/7Dyz/z3sQs7GbbD/hMGDffp2AFAEooMjQ1dHz6H9VIaZQ6p3b3O N1c7e/+egIglOJKlGb0pWuKUJroTRkP0mzP4fG11W7kgWgPCwTABSwi+mhA+DQ== Received: from beefy19.nyi.freebsd.org (beefy19.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:22]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4WHzfZ3x1Zz18YX for ; Mon, 8 Jul 2024 22:43:02 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 11b9 by beefy19.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy19.nyi.freebsd.org); Mon, 08 Jul 2024 22:43:02 +0000 To: jwb@FreeBSD.org Subject: [package - 140i386-quarterly][biology/gcta] Failed for gcta-1.94.1_2 in checksum Cc: pkg-fallout@FreeBSD.org Date: Mon, 08 Jul 2024 22:43:02 +0000 Message-Id: <668c6b76.11b9.5b6ae423@beefy19.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@FreeBSD.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy19/data/140i386-quarterly/a351889cffbc/logs/gcta-1.94.1_2.log Build URL: https://pkg-status.freebsd.org/beefy19/build.html?mastername=140i386-quarterly&build=a351889cffbc Log: =>> Building biology/gcta build started at Mon Jul 8 22:43:00 UTC 2024 port directory: /usr/ports/biology/gcta package name: gcta-1.94.1_2 building for: FreeBSD 140i386-quarterly-job-01 14.0-RELEASE-p8 FreeBSD 14.0-RELEASE-p8 i386 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1581 Jul 7 01:01 /usr/ports/biology/gcta/Makefile Ports top last git commit: a351889cf Ports top unclean checkout: no Port dir last git commit: a351889cf Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1-30-g79e3edcd Host OSVERSION: 1500019 Jail OSVERSION: 1400097 Job Id: 01 ---Begin Environment--- SHELL=/bin/sh BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 OSVERSION=1400097 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 UNAME_m=i386 UNAME_p=i386 UNAME_r=14.0-RELEASE-p8 LOCALBASE=/usr/local UNAME_v=FreeBSD 14.0-RELEASE-p8 USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1-30-g79e3edcd MASTERMNT=/usr/local/poudriere/data/.m/140i386-quarterly/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/140i386-quarterly/01/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=140i386-quarterly SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/140i386-quarterly/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1-30-g79e3edcd SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- EIGEN3_INCLUDE_DIR=/usr/local/include/eigen3 BOOST_INCLUDE_DIR=/usr/local/include/boost OPENBLAS=/usr/local SPECTRA_INCLUDE_DIR=/usr/local/include/Spectra XDG_DATA_HOME=/wrkdirs/usr/ports/biology/gcta/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/gcta/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/gcta/work/.cache HOME=/wrkdirs/usr/ports/biology/gcta/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/gcta/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/gcta/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/gcta/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/gcta/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/gcta/work/.cache HOME=/wrkdirs/usr/ports/biology/gcta/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/gcta/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/gcta/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/gcta/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fopenmp -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict -aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/gcta" EXAMPLESDIR="share/examples/gcta" DATADIR="share/gcta" WWWDIR="www/gcta" ETCDIR="etc/gcta" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gcta DOCSDIR=/usr/local/share/doc/gcta EXAMPLESDIR=/usr/local/share/examples/gcta WWWDIR=/usr/local/www/gcta ETCDIR=/usr/local/etc/gcta --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> gcta-1.94.1_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.3.pkg [140i386-quarterly-job-01] Installing pkg-1.21.3... [140i386-quarterly-job-01] Extracting pkg-1.21.3: .......... done ===> gcta-1.94.1_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of gcta-1.94.1_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by gcta-1.94.1_2 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by gcta-1.94.1_2 for building => SHA256 Checksum mismatch for jianyangqt-gcta-v1.94.1_GH0.tar.gz. => SHA256 Checksum OK for zhilizheng-plink-ng-3744540_GH0.tar.gz. ===> Refetch for 1 more times files: jianyangqt-gcta-v1.94.1_GH0.tar.gz ===> License GPLv3 accepted by the user => jianyangqt-gcta-v1.94.1_GH0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://codeload.github.com/jianyangqt/gcta/tar.gz/v1.94.1?dummy=/jianyangqt-gcta-v1.94.1_GH0.tar.gz fetch: https://codeload.github.com/jianyangqt/gcta/tar.gz/v1.94.1?dummy=/jianyangqt-gcta-v1.94.1_GH0.tar.gz: size unknown fetch: https://codeload.github.com/jianyangqt/gcta/tar.gz/v1.94.1?dummy=/jianyangqt-gcta-v1.94.1_GH0.tar.gz: size of remote file is not known jianyangqt-gcta-v1.94.1_GH0.tar.gz 1075 kB 8409 kBps 00s => Fetched file size mismatch (expected 49152, actual 1101577) => Trying next site => Attempting to fetch http://distcache.FreeBSD.org/ports-distfiles/jianyangqt-gcta-v1.94.1_GH0.tar.gz fetch: http://distcache.FreeBSD.org/ports-distfiles/jianyangqt-gcta-v1.94.1_GH0.tar.gz: size mismatch: expected 49152, actual 1101577 => Couldn't fetch it - please try to retrieve this => port manually into /portdistfiles/ and try again. *** Error code 1 Stop. make[1]: stopped in /usr/ports/biology/gcta *** Error code 1 Stop. make: stopped in /usr/ports/biology/gcta