[package - 132amd64-quarterly][science/py-qcengine] Failed for py39-qcengine-0.29.0 in run-depends

From: <pkg-fallout_at_FreeBSD.org>
Date: Thu, 11 Jan 2024 01:18:19 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/beefy14/data/132amd64-quarterly/d9d4201a6cd7/logs/py39-qcengine-0.29.0.log
Build URL:      https://pkg-status.freebsd.org/beefy14/build.html?mastername=132amd64-quarterly&build=d9d4201a6cd7
Log:

=>> Building science/py-qcengine
build started at Thu Jan 11 01:17:34 UTC 2024
port directory: /usr/ports/science/py-qcengine
package name: py39-qcengine-0.29.0
building for: FreeBSD 132amd64-quarterly-job-13 13.2-RELEASE-p9 FreeBSD 13.2-RELEASE-p9 amd64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r--  1 root  wheel  1636 Jan  6 01:02 /usr/ports/science/py-qcengine/Makefile
Ports top last git commit: d9d4201a6
Ports top unclean checkout: no
Port dir last git commit: 756e18783
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.0
Host OSVERSION: 1500006
Jail OSVERSION: 1302001
Job Id: 13

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PORT_FLAGS=
PKGENV=
FLAVOR=py39
MAKE_ARGS= FLAVOR=py39
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-qcengine/work-py39  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-qcengine/work-py39  XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-qcengine/work-py39/.cache  HOME=/wrkdirs/usr/ports/science/py-qcengine/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-qcengine/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-qcengine/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-qcengine/work-py39  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-qcengine/work-py39  XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-qcengine/work-py39/.cache  HOME=/wrkdirs/usr/ports/science/py-qcengine/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-qcengine/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-qcengine/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PRO
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--End MAKE_ENV--

--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python3.9  PYTHON_LIBDIR=lib/python3.9  PYTHON_PLATFORM=freebsd13  PYTHON_SITELIBDIR=lib/python3.9/site-packages  PYTHON_SUFFIX=39  PYTHON_EXT_SUFFIX=.cpython-39  PYTHON_VER=3.9  PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py39-qcengine"  EXAMPLESDIR="share/examples/py39-qcengine"  DATADIR="share/py39-qcengine"  WWWDIR="www/py39-qcengine"  ETCDIR="etc/py39-qcengine"
--End PLIST_SUB--

--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.9  PYTHON_LIBDIR=/usr/local/lib/python3.9  PYTHON_PLATFORM=freebsd13  PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages  PYTHON_SUFFIX=39  PYTHON_EXT_SUFFIX=.cpython-39  PYTHON_VER=3.9  PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/py39-qcengine DOCSDIR=/usr/local/share/doc/py39-qcengine EXAMPLESDIR=/usr/local/share/examples/py39-qcengine  WWWDIR=/usr/local/www/py39-qcengine ETCDIR=/usr/local/etc/py39-qcengine
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
####  ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
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data seg size           (kbytes, -d)  33554432
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core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  8192
virtual mem size        (kbytes, -v)  unlimited
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socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py39-qcengine-0.29.0 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.20.9.pkg
[132amd64-quarterly-job-13] Installing pkg-1.20.9...
[132amd64-quarterly-job-13] Extracting pkg-1.20.9: .......... done
===>   py39-qcengine-0.29.0 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py39-qcengine-0.29.0
===========================================================================
=======================<phase: fetch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-qcengine-0.29.0 for building
===========================================================================
=======================<phase: checksum       >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-qcengine-0.29.0 for building
=> SHA256 Checksum OK for qcengine-0.29.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract        >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-qcengine-0.29.0 for building
===>  Extracting for py39-qcengine-0.29.0
=> SHA256 Checksum OK for qcengine-0.29.0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Patching for py39-qcengine-0.29.0
===========================================================================
=======================<phase: build-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py39-qcengine-0.29.0 depends on package: py39-setuptools>=63.1.0 - not found
===>   Installing existing package /packages/All/py39-setuptools-63.1.0_1.pkg
[132amd64-quarterly-job-13] Installing py39-setuptools-63.1.0_1...
[132amd64-quarterly-job-13] `-- Installing python39-3.9.18...
[132amd64-quarterly-job-13] |   `-- Installing gettext-runtime-0.22.3...
[132amd64-quarterly-job-13] |   | `-- Installing indexinfo-0.3.1...
[132amd64-quarterly-job-13] |   | `-- Extracting indexinfo-0.3.1: .... done
[132amd64-quarterly-job-13] |   `-- Extracting gettext-runtime-0.22.3: .......... done
[132amd64-quarterly-job-13] |   `-- Installing libffi-3.4.4...
[132amd64-quarterly-job-13] |   `-- Extracting libffi-3.4.4: .......... done
[132amd64-quarterly-job-13] |   `-- Installing mpdecimal-2.5.1...
[132amd64-quarterly-job-13] |   `-- Extracting mpdecimal-2.5.1: .......... done
[132amd64-quarterly-job-13] |   `-- Installing readline-8.2.7...
[132amd64-quarterly-job-13] |   `-- Extracting readline-8.2.7: .......... done
[132amd64-quarterly-job-13] `-- Extracting python39-3.9.18: .......... done
[132amd64-quarterly-job-13] Extracting py39-setuptools-63.1.0_1: .......... done
=====
Message from python39-3.9.18:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py39-gdbm       databases/py-gdbm@py39
py39-sqlite3    databases/py-sqlite3@py39
py39-tkinter    x11-toolkits/py-tkinter@py39
===>   py39-qcengine-0.29.0 depends on package: py39-setuptools>=63.1.0 - found
<snip>
[132amd64-quarterly-job-13] |   |   `-- Installing pango-1.50.14...
[132amd64-quarterly-job-13] |   |   | `-- Installing encodings-1.0.5,1...
[132amd64-quarterly-job-13] |   |   | `-- Extracting encodings-1.0.5,1: .......... done
[132amd64-quarterly-job-13] |   |   | `-- Installing libthai-0.1.29...
[132amd64-quarterly-job-13] |   |   |   `-- Installing libdatrie-0.2.13_1...
[132amd64-quarterly-job-13] |   |   |   `-- Extracting libdatrie-0.2.13_1: .......... done
[132amd64-quarterly-job-13] |   |   | `-- Extracting libthai-0.1.29: .......... done
[132amd64-quarterly-job-13] |   |   | `-- Installing xorg-fonts-truetype-7.7_1...
[132amd64-quarterly-job-13] |   |   |   `-- Installing dejavu-2.37_3...
[132amd64-quarterly-job-13] |   |   |   | `-- Installing mkfontscale-1.2.1...
[132amd64-quarterly-job-13] |   |   |   |   `-- Installing libfontenc-1.1.7...
[132amd64-quarterly-job-13] |   |   |   |   `-- Extracting libfontenc-1.1.7: ......... done
[132amd64-quarterly-job-13] |   |   |   | `-- Extracting mkfontscale-1.2.1: ....... done
[132amd64-quarterly-job-13] |   |   |   `-- Extracting dejavu-2.37_3: .......... done
[132amd64-quarterly-job-13] |   |   |   `-- Installing font-bh-ttf-1.0.3_5...
[132amd64-quarterly-job-13] |   |   |   `-- Extracting font-bh-ttf-1.0.3_5: .......... done
[132amd64-quarterly-job-13] |   |   |   `-- Installing font-misc-ethiopic-1.0.4...
[132amd64-quarterly-job-13] |   |   |   `-- Extracting font-misc-ethiopic-1.0.4: ...... done
[132amd64-quarterly-job-13] |   |   |   `-- Installing font-misc-meltho-1.0.3_5...
[132amd64-quarterly-job-13] |   |   |   `-- Extracting font-misc-meltho-1.0.3_5: .......... done
[132amd64-quarterly-job-13] |   |   | `-- Extracting xorg-fonts-truetype-7.7_1: ... done
[132amd64-quarterly-job-13] |   |   `-- Extracting pango-1.50.14: .......... done
[132amd64-quarterly-job-13] |   | `-- Extracting graphviz-9.0.0_1: .......... done
[132amd64-quarterly-job-13] |   `-- Extracting py39-pydot-1.4.2: .......... done
[132amd64-quarterly-job-13] |   `-- Installing py39-pygraphviz-1.6...
[132amd64-quarterly-job-13] |   `-- Extracting py39-pygraphviz-1.6: .......... done
[132amd64-quarterly-job-13] |   `-- Installing py39-scikit-sparse-0.4.8_6...
[132amd64-quarterly-job-13] |   | `-- Installing py39-scipy-1.11.1_2...
[132amd64-quarterly-job-13] |   |   `-- Installing blas-3.12.0...
[132amd64-quarterly-job-13] |   |   `-- Extracting blas-3.12.0: ........ done
[132amd64-quarterly-job-13] |   | `-- Extracting py39-scipy-1.11.1_2: .......... done
[132amd64-quarterly-job-13] |   `-- Extracting py39-scikit-sparse-0.4.8_6: .......... done
[132amd64-quarterly-job-13] |   `-- Installing py39-yaml-6.0.1...
[132amd64-quarterly-job-13] |   | `-- Installing libyaml-0.2.5...
[132amd64-quarterly-job-13] |   | `-- Extracting libyaml-0.2.5: ......... done
[132amd64-quarterly-job-13] |   `-- Extracting py39-yaml-6.0.1: .......... done
[132amd64-quarterly-job-13] `-- Extracting py39-networkx-3.2,1: .......... done
[132amd64-quarterly-job-13] `-- Installing py39-nglview-3.0.7...
[132amd64-quarterly-job-13] `-- Extracting py39-nglview-3.0.7: .......... done
[132amd64-quarterly-job-13] `-- Installing py39-pint-0.23...
[132amd64-quarterly-job-13] `-- Extracting py39-pint-0.23: .......... done
[132amd64-quarterly-job-13] `-- Installing py39-pydantic2-2.5.3...
[132amd64-quarterly-job-13] |   `-- Installing py39-annotated-types-0.6.0...
[132amd64-quarterly-job-13] |   `-- Extracting py39-annotated-types-0.6.0: .......... done
[132amd64-quarterly-job-13] |   `-- Installing py39-pydantic-core-2.14.6...
[132amd64-quarterly-job-13] |   `-- Extracting py39-pydantic-core-2.14.6: .......... done
pkg-static: py39-pydantic2-2.5.3 conflicts with py39-pydantic-1.10.13,1 (installs files into the same place).  Problematic file: /usr/local/lib/python3.9/site-packages/pydantic/__init__.py

Failed to install the following 1 package(s): /packages/All/py39-qcelemental-0.27.1.pkg
==> Running trigger: fontconfig.ucl
Running fc-cache to build fontconfig cache...
==> Running trigger: gio-modules.ucl
Generating GIO modules cache
==> Running trigger: glib-schemas.ucl
Compiling glib schemas
No schema files found: doing nothing.
=====
Message from openpgm-5.2.122_6:

--
===>   NOTICE:

The openpgm port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing
=====
Message from gcc12-12.2.0_7:

--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc12

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from boost-libs-1.83.0_1:

--
You have built the Boost library with thread support.

Don't forget to add -pthread to your linker options when
linking your code.
=====
Message from freetype2-2.13.2:

--
The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as
the default, emulating a modern version of ClearType. This change inevitably
leads to different rendering results, and you might change port's options to
adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment
variable).

The environment variable "FREETYPE_PROPERTIES" can be used to control the
driver properties. Example:

FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
	cff:no-stem-darkening=1 \
	autofitter:warping=1

This allows to select, say, the subpixel hinting mode at runtime for a given
application.

If LONG_PCF_NAMES port's option was enabled, the PCF family names may include
the foundry and information whether they contain wide characters. For example,
"Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at
run time with using pcf:no-long-family-names property, if needed. Example:

FREETYPE_PROPERTIES=pcf:no-long-family-names=1

How to recreate fontconfig cache with using such environment variable,
if needed:
# env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv

The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed).
=====
Message from postgresql15-client-15.5:

--
The PostgreSQL port has a collection of "side orders":

postgresql-docs
  For all of the html documentation

p5-Pg
  A perl5 API for client access to PostgreSQL databases.

postgresql-tcltk
  If you want tcl/tk client support.

postgresql-jdbc
  For Java JDBC support.

postgresql-odbc
  For client access from unix applications using ODBC as access
  method. Not needed to access unix PostgreSQL servers from Win32
  using ODBC. See below.

ruby-postgres, py-psycopg2
  For client access to PostgreSQL databases using the ruby & python
  languages.

postgresql-plperl, postgresql-pltcl & postgresql-plruby
  For using perl5, tcl & ruby as procedural languages.

postgresql-contrib
  Lots of contributed utilities, postgresql functions and
  datatypes. There you find pg_standby, pgcrypto and many other cool
  things.

etc...
=====
Message from py39-pandas-2.0.3,1:

--
Install math/py-statsmodels to enable parts of pandas.stats.
Install devel/py-xarray to enable the to_xarray() function.
=====
Message from libthai-0.1.29:

--
===>   NOTICE:

The libthai port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing
=====
Message from dejavu-2.37_3:

--
Make sure that the freetype module is loaded.  If it is not, add the following
line to the "Modules" section of your X Windows configuration file:

	Load "freetype"

Add the following line to the "Files" section of X Windows configuration file:

	FontPath "/usr/local/share/fonts/dejavu/"

Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
*** Error code 1

Stop.
make: stopped in /usr/ports/science/py-qcengine