From nobody Thu Jan 04 21:44:24 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4T5g8m6Wmsz55LGJ for ; Thu, 4 Jan 2024 21:44:24 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4T5g8m4cdqz4Khh for ; Thu, 4 Jan 2024 21:44:24 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1704404664; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=U+cYsS4xaGq3UIDQhaGiSjo11QXrAS4LmasOVlAtAR8=; b=Cqpde6cjWJAWrSacABH5Mu9bt/zVEgQVDeZMMOvIN9fjXn71kFggKIaKl6sVOhGAX+RLnt dlaklHUM4kEQEFWc3naEEGsbYXTyuDDJPrl6FVjdM2XI7xSfFG0eqOc9emunrro1MNEwgd qrChKKbk/Q15dv5z1mjT0cUMMCCsMSQNXPifn3EIiD/S1pOKlQB8pNPSMy6d3DLa0x5+ly 06+RhZ3Xgeuts1oakNczyvxrSIIyLa/lN/+OqqvbzQIFFGCY1W3HgzjkdV1Eb+mO655B3J rivEdn+GIXLBDgphWw9jM2Ybb/0OwKP5F2vk3falTR+IIWZR5WFjQXqrY+TCeg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1704404664; a=rsa-sha256; cv=none; b=gsPNgIaJPd1l1Fm7aeA6Uq58/sSI9WrmVgyYZwUBbFh9yWSuW1jtK6p0oEkmYa6G0/wv4t MUSdi4+g74w48D39mfaan7+NBk3RMv2OtWo7B2t4z4R1JrdCB8Qi81Dy60Ron4S87RZuiX +sdiIOmSFjgRuevcALNeMBfHcBlcqJMJeSQdWygUNPZtLIrFMyeHklwA/ygxtBKljBrCfT z2XGg04FBdCFxN+ylDLVFnJGZ5e9t0Q0Mm9oQzn4m9M95y99A1yC8c6LysXrtFLvgB+FOH 2ZeZJ1VpWVyvdhvbni2IkGeN9/z5/ovDHU8WpNjZHCuA9QHrY4U379CvvpSW2Q== Received: from ampere1.nyi.freebsd.org (ampere1.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:23]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4T5g8m3PXVzX13 for ; Thu, 4 Jan 2024 21:44:24 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 2306 by ampere1.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on ampere1.nyi.freebsd.org); Thu, 04 Jan 2024 21:44:24 +0000 To: yuri@FreeBSD.org Subject: [package - 132arm64-quarterly][science/votca] Failed for votca-2022.1_1 in build Cc: pkg-fallout@FreeBSD.org Date: Thu, 04 Jan 2024 21:44:24 +0000 Message-Id: <659726b8.2306.3c690388@ampere1.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere1/data/132arm64-quarterly/7ccf22b5d173/logs/votca-2022.1_1.log Build URL: https://pkg-status.freebsd.org/ampere1/build.html?mastername=132arm64-quarterly&build=7ccf22b5d173 Log: =>> Building science/votca build started at Thu Jan 4 21:33:45 UTC 2024 port directory: /usr/ports/science/votca package name: votca-2022.1_1 building for: FreeBSD 132arm64-quarterly-job-05 13.2-RELEASE-p9 FreeBSD 13.2-RELEASE-p9 arm64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 2064 Nov 19 01:01 /usr/ports/science/votca/Makefile Ports top last git commit: 7ccf22b5d Ports top unclean checkout: no Port dir last git commit: 77ebebf99 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.0 Host OSVERSION: 1500006 Jail OSVERSION: 1302001 Job Id: 05 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p9 UNAME_r=13.2-RELEASE-p9 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.0 MASTERMNT=/usr/local/poudriere/data/.m/132arm64-quarterly/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/132arm64-quarterly/05/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=132arm64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/132arm64-quarterly/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.0 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for votca-2022.1_1: APPS=on: Build applications ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/votca/work/.cache HOME=/wrkdirs/usr/ports/science/votca/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/votca/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/votca/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/votca/work/.cache HOME=/wrkdirs/usr/ports/science/votca/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/votca/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/votca/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/votca/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED " MANPREFIX="/usr/local" BSD_INSTALL _PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- APPS="" NO_APPS="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.34.3 PERL_VER=5.34 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.34 DOCSDIR="share/doc/votca" EXAMPLESDIR="share/examples/votca" DATADIR="share/votca" WWWDIR="www/votca" ETCDIR="etc/votca" --End PLIST_SUB-- --SUB_LIST-- APPS="" NO_APPS="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/votca DOCSDIR=/usr/local/share/doc/votca EXAMPLESDIR=/usr/local/share/examples/votca WWWDIR=/usr/local/www/votca ETCDIR=/usr/local/etc/votca --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License APACHE20 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> votca-2022.1_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9.pkg [132arm64-quarterly-job-05] Installing pkg-1.20.9... [132arm64-quarterly-job-05] Extracting pkg-1.20.9: .......... done ===> votca-2022.1_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of votca-2022.1_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by votca-2022.1_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by votca-2022.1_1 for building => SHA256 Checksum OK for votca-votca-v2022.1_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by votca-2022.1_1 for building ===> Extracting for votca-2022.1_1 => SHA256 Checksum OK for votca-votca-v2022.1_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for votca-2022.1_1 ===> Applying FreeBSD patches for votca-2022.1_1 from /usr/ports/science/votca/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> votca-2022.1_1 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-5.2.15.pkg [132arm64-quarterly-job-05] Installing bash-5.2.15... [132arm64-quarterly-job-05] `-- Installing gettext-runtime-0.22_1... [132arm64-quarterly-job-05] | `-- Installing indexinfo-0.3.1... [132arm64-quarterly-job-05] | `-- Extracting indexinfo-0.3.1: .... done [132arm64-quarterly-job-05] `-- Extracting gettext-runtime-0.22_1: .......... done [132arm64-quarterly-job-05] `-- Installing readline-8.2.1... [132arm64-quarterly-job-05] `-- Extracting readline-8.2.1: .......... done [132arm64-quarterly-job-05] Extracting bash-5.2.15: .......... done ===> votca-2022.1_1 depends on executable: bash - found ===> Returning to build of votca-2022.1_1 ===> votca-2022.1_1 depends on executable: lmp - not found ===> Installing existing package /packages/All/lammps-2023.08.02.pkg [132arm64-quarterly-job-05] Installing lammps-2023.08.02... [132arm64-quarterly-job-05] `-- Installing curl-8.5.0... [132arm64-quarterly-job-05] | `-- Installing libnghttp2-1.57.0... [132arm64-quarterly-job-05] | `-- Extracting libnghttp2-1.57.0: .......... done [132arm64-quarterly-job-05] | `-- Installing libpsl-0.21.2_3... [132arm64-quarterly-job-05] | | `-- Installing libidn2-2.3.4... [132arm64-quarterly-job-05] | | `-- Installing libunistring-1.1... [132arm64-quarterly-job-05] | | `-- Extracting libunistring-1.1: .......... done [132arm64-quarterly-job-05] | | `-- Extracting libidn2-2.3.4: .......... done [ 16% 58/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/cgengine.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/cgengine.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/cgengine.cc.o -c /wrkdirs/usr/ports/science/votca/w ork/votca-2022.1/csg/src/libcsg/cgengine.cc [ 17% 59/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o -c /wrkdirs/usr/ports/ science/votca/work/votca-2022.1/csg/src/libcsg/cgmoleculedef.cc [ 17% 60/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/csgapplication.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/csgapplication.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/csgapplication.cc.o -c /wrkdirs/usr/por ts/science/votca/work/votca-2022.1/csg/src/libcsg/csgapplication.cc [ 17% 61/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong 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-I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/topologyreader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/topologyreader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/topologyreader.cc.o -c /wrkdirs/usr/por ts/science/votca/work/votca-2022.1/csg/src/libcsg/topologyreader.cc [ 23% 79/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/triclinicbox.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/triclinicbox.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/triclinicbox.cc.o -c /wrkdirs/usr/ports/sci ence/votca/work/votca-2022.1/csg/src/libcsg/triclinicbox.cc [ 23% 80/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/version.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/version.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/version.cc.o -c /wrkdirs/usr/ports/science/votca/work /votca-2022.1/csg/src/libcsg/version.cc [ 23% 81/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectoryreader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectoryreader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectoryreader.cc.o -c /wrkdirs/u 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csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectorywriter.cc.o -c /wrkdirs/u sr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/trajectorywriter.cc [ 24% 83/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/m odules/io/dlpolytrajectorywriter.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc:46:26: warning: 'extension' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] if (boost::filesystem::extension(filepath).size() == 0) { ^ /usr/local/include/boost/filesystem/convenience.hpp:28:1: note: 'extension' has been explicitly marked deprecated here BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::extension() instead") ^ /usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 'BOOST_FILESYSTEM_DETAIL_DEPRECATED' #define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg) ^ /usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from macro 'BOOST_DEPRECATED' #define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg))) ^ /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc:51:33: warning: 'extension' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] } else if (boost::filesystem::extension(filepath) == ".dlpc") { ^ /usr/local/include/boost/filesystem/convenience.hpp:28:1: note: 'extension' has been explicitly marked deprecated here BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::extension() instead") ^ /usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 'BOOST_FILESYSTEM_DETAIL_DEPRECATED' #define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg) ^ /usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from macro 'BOOST_DEPRECATED' #define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg))) ^ /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc:56:33: warning: 'extension' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] } else if (boost::filesystem::extension(filepath) == ".dlph") { ^ /usr/local/include/boost/filesystem/convenience.hpp:28:1: note: 'extension' has been explicitly marked deprecated here BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::extension() instead") ^ /usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 'BOOST_FILESYSTEM_DETAIL_DEPRECATED' #define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg) ^ /usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from macro 'BOOST_DEPRECATED' #define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg))) ^ /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc:65:26: warning: 'basename' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] if (boost::filesystem::basename(filepath).size() == 0) { ^ /usr/local/include/boost/filesystem/convenience.hpp:34:1: note: 'basename' has been explicitly marked deprecated here BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::stem() instead") ^ /usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 'BOOST_FILESYSTEM_DETAIL_DEPRECATED' #define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg) ^ /usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from macro 'BOOST_DEPRECATED' #define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg))) ^ 4 warnings generated. [ 24% 84/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/m odules/io/dlpolytrajectoryreader.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc:50:26: warning: 'extension' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] if (boost::filesystem::extension(filepath).size() == 0) { ^ /usr/local/include/boost/filesystem/convenience.hpp:28:1: note: 'extension' has been explicitly marked deprecated here BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::extension() instead") ^ /usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 'BOOST_FILESYSTEM_DETAIL_DEPRECATED' #define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg) ^ /usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from macro 'BOOST_DEPRECATED' #define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg))) ^ /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc:56:33: warning: 'extension' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] } else if (boost::filesystem::extension(filepath) == ".dlpc") { ^ /usr/local/include/boost/filesystem/convenience.hpp:28:1: note: 'extension' has been explicitly marked deprecated here BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::extension() instead") ^ /usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 'BOOST_FILESYSTEM_DETAIL_DEPRECATED' #define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg) ^ /usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from macro 'BOOST_DEPRECATED' #define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg))) ^ /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc:61:33: warning: 'extension' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] } else if (boost::filesystem::extension(filepath) == ".dlph") { ^ /usr/local/include/boost/filesystem/convenience.hpp:28:1: note: 'extension' has been explicitly marked deprecated here BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::extension() instead") ^ /usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 'BOOST_FILESYSTEM_DETAIL_DEPRECATED' #define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg) ^ /usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from macro 'BOOST_DEPRECATED' #define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg))) ^ /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc:70:26: warning: 'basename' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] if (boost::filesystem::basename(filepath).size() == 0) { ^ /usr/local/include/boost/filesystem/convenience.hpp:34:1: note: 'basename' has been explicitly marked deprecated here BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::stem() instead") ^ /usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 'BOOST_FILESYSTEM_DETAIL_DEPRECATED' #define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg) ^ /usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from macro 'BOOST_DEPRECATED' #define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg))) ^ 4 warnings generated. [ 25% 85/331] /usr/bin/c++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -DNDEBUG -std=c++17 -fPIC -fopenmp=libomp -pthread -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modul es/io/dlpolytopologyreader.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytopologyreader.cc /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytopologyreader.cc:159:26: warning: 'basename' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] if (boost::filesystem::basename(filepath).size() == 0) { ^ /usr/local/include/boost/filesystem/convenience.hpp:34:1: note: 'basename' has been explicitly marked deprecated here BOOST_FILESYSTEM_DETAIL_DEPRECATED("Use path::stem() instead") ^ /usr/local/include/boost/filesystem/config.hpp:73:49: note: expanded from macro 'BOOST_FILESYSTEM_DETAIL_DEPRECATED' #define BOOST_FILESYSTEM_DETAIL_DEPRECATED(msg) BOOST_DEPRECATED(msg) ^ /usr/local/include/boost/config/compiler/clang.hpp:358:46: note: expanded from macro 'BOOST_DEPRECATED' #define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg))) ^ 1 warning generated. 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/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT csg/src/tools/CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -MF csg/src/tools/CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o.d -o csg/src/tools/CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/tools/csg_dlptopol.cc [ 35% 118/331] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -DNDEBUG -fstack-protector-strong csg/src/tools/CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -o csg/src/tools/csg_dlptopol -Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg:/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/local/lib/libboost_program_options.so /usr/local/lib/libfftw3.so /usr/lib/libomp.so -Wl,-rpath-link,/usr/local/lib && : [ 35% 119/331] /usr/bin/c++ -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT csg/src/tools/CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -MF csg/src/tools/CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o.d -o csg/src/tools/CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/tools/csg_fmatch.cc [ 35% 120/331] : && /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -DNDEBUG -fstack-protector-strong csg/src/tools/CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -o csg/src/tools/csg_fmatch -Wl,-rpath,/wrkdirs/usr/ports/science/votca/work/.build/csg/src/libcsg:/wrkdirs/usr/ports/science/votca/work/.build/tools/src/libtools:/usr/local/lib: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/local/lib/libboost_program_options.so /usr/local/lib/libfftw3.so /usr/lib/libomp.so -Wl,-rpath-link,/usr/local/lib && : [ 35% 121/331] cd /wrkdirs/usr/ports/science/votca/work/.build/csg/src/tools && /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc --name /wrkdirs/usr/ports/science/votca/work/.build/csg/src/tools/csg_reupdate --format groff --out csg_reupdate.man FAILED: csg/src/tools/csg_reupdate.man /wrkdirs/usr/ports/science/votca/work/.build/csg/src/tools/csg_reupdate.man cd /wrkdirs/usr/ports/science/votca/work/.build/csg/src/tools && /wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc --name /wrkdirs/usr/ports/science/votca/work/.build/csg/src/tools/csg_reupdate --format groff --out csg_reupdate.man ld-elf.so.1: /lib/libgcc_s.so.1: version GCC_4.5.0 required by /usr/local/lib/gcc12/libstdc++.so.6 not found Traceback (most recent call last): File "/wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc", line 282, in main() File "/wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc", line 278, in main convert_help_message(args) File "/wrkdirs/usr/ports/science/votca/work/.build/tools/scripts/votca_help2doc", line 263, in convert_help_message msg = subprocess.check_output( File "/usr/local/lib/python3.9/subprocess.py", line 424, in check_output return run(*popenargs, stdout=PIPE, timeout=timeout, check=True, File "/usr/local/lib/python3.9/subprocess.py", line 528, in run raise CalledProcessError(retcode, process.args, subprocess.CalledProcessError: Command '/wrkdirs/usr/ports/science/votca/work/.build/csg/src/tools/csg_reupdate --help' returned non-zero exit status 1. [ 36% 121/331] /usr/bin/c++ -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT csg/src/tools/CMakeFiles/csg_density.dir/csg_density.cc.o -MF csg/src/tools/CMakeFiles/csg_density.dir/csg_density.cc.o.d -o csg/src/tools/CMakeFiles/csg_density.dir/csg_density.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/tools/csg_density.cc [ 36% 121/331] /usr/bin/c++ -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-2022.1/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include -I/wrkdirs/usr/ports/science/votca/work/.build/tools/include/votca/tools -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DBOOST_TIMER_ENABLE_DEPRECATED -DNDEBUG -std=c++17 -fopenmp=libomp -MD -MT csg/src/tools/CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -MF csg/src/tools/CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o.d -o csg/src/tools/CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-2022.1/csg/src/tools/csg_imc_solve.cc ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/science/votca