From nobody Thu Feb 29 08:33:04 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Tlkxs2P08z5CT71 for ; Thu, 29 Feb 2024 08:33:05 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Tlkxr65jSz4p1q for ; Thu, 29 Feb 2024 08:33:04 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1709195584; a=rsa-sha256; cv=none; b=KXi5t6d8xmBHqUDYwk1NzYhsW0XgA63Dlw2E2tlVt3Abe4TqR7sB+wYLNJ7OiD6dFWx5/9 5z2X2n5P8DI5Tsbentib0/GjrRpW/+CjjNyfLUGrehpY5dkNyBc8AJOyRGdQNvJucJSATz JMh+RJXXdnAJfU22HHS1XM2lGgFEFVWtqsyNqae6NCuW4sfyyHq9OwpJRGNCWtr3Kxv7Eg BlD0x+jgulJnhoI7GGpaDAfsXHUIwRK1VJ2epQhFGdvzKGp/yQzWuFINdpcitu/ZvgKqrj TaY4vXGK3lUSLhwHZa1L0RM8fcEa96mJuRX/mCopmmgpOb1t4xGkxe7mglO2tg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1709195584; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=FoyNzyEsNGlImeSWt8pQk7G5rcF5HZJnf2P+ImRLxuk=; b=Qig1NTKdOu6K/2PFkpJ9z20lHue+5+hn1oaACloKiPDD5soTxB7EOhR0w4OCyiFRx69PKL Yt30yjw5fOk7ZaDrYcmUWq9gwrYz58Hsb+SyssOztQcLzp+L6IzYzcTJOE52gvK2eE0tqS BvtVTGwwdq6AlXo6phOKyZlN3uGIZUkAf+KbcgDdCqK3/hPhAbj3wMb45um9FrHtgSu+gr aXJKUObb++x8Mbf9TuI16/oQeVY8duvOCjrWH6sZcShE9cntpgMSuAEWXvnzwrRebT15bg 7zYakUgKLvM5xhU63mpxNnlpKMIxeRlfID2d4pLyrg4p8b13bGXEfESxUcp0jg== Received: from ampere2.nyi.freebsd.org (ampere2.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:24]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4Tlkxr5hq8zZnx for ; Thu, 29 Feb 2024 08:33:04 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 71db by ampere2.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on ampere2.nyi.freebsd.org); Thu, 29 Feb 2024 08:33:04 +0000 To: pkg-fallout@FreeBSD.org Subject: [package - main-armv7-default][biology/py-bx-python] Failed for py39-bx-python-0.11.0 in configure/runaway Date: Thu, 29 Feb 2024 08:33:04 +0000 Message-Id: <65e04140.71db.7264870a@ampere2.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/p43e3af5f5763_sf5f08e41aa/logs/py39-bx-python-0.11.0.log Build URL: https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=p43e3af5f5763_sf5f08e41aa Log: =>> Building biology/py-bx-python build started at Thu Feb 29 06:32:54 UTC 2024 port directory: /usr/ports/biology/py-bx-python package name: py39-bx-python-0.11.0 building for: FreeBSD main-armv7-default-job-10 15.0-CURRENT FreeBSD 15.0-CURRENT 1500014 arm maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 591 Feb 13 01:02 /usr/ports/biology/py-bx-python/Makefile Ports top last git commit: 43e3af5f576 Ports top unclean checkout: no Port dir last git commit: 3fad843b18c Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1-1-g1e9f97d6 Host OSVERSION: 1500006 Jail OSVERSION: 1500014 Job Id: 10 !!! Jail is newer than host. (Jail: 1500014, Host: 1500006) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500014 UNAME_v=FreeBSD 15.0-CURRENT 1500014 UNAME_r=15.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1-1-g1e9f97d6 MASTERMNT=/usr/local/poudriere/data/.m/main-armv7-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-armv7-default/10/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=main-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1-1-g1e9f97d6 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-bx-python/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-bx-python/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-bx-python/work-py39/.cache HOME=/wrkdirs/usr/ports/biology/py-bx-python/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-bx-python/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-bx-python/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-bx-python/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-bx-python/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-bx-python/work-py39/.cache HOME=/wrkdirs/usr/ports/biology/py-bx-python/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-bx-python/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-bx-python/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/bx-python" EXAMPLESDIR="share/examples/bx-python" DATADIR="share/bx-python" WWWDIR="www/bx-python" ETCDIR="etc/bx-python" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/bx-python DOCSDIR=/usr/local/share/doc/bx-python EXAMPLESDIR=/usr/local/share/examples/bx-python WWWDIR=/usr/local/www/bx-python ETCDIR=/usr/local/etc/bx-python --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-bx-python-0.11.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [main-armv7-default-job-10] Installing pkg-1.20.9_1... [main-armv7-default-job-10] Extracting pkg-1.20.9_1: .......... done ===> py39-bx-python-0.11.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-bx-python-0.11.0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by py39-bx-python-0.11.0 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by py39-bx-python-0.11.0 for building => SHA256 Checksum OK for bx-python-0.11.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by py39-bx-python-0.11.0 for building ===> Extracting for py39-bx-python-0.11.0 => SHA256 Checksum OK for bx-python-0.11.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py39-bx-python-0.11.0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-bx-python-0.11.0 depends on package: py39-numpy>=1.16,1<1.26,1 - not found ===> Installing existing package /packages/All/py39-numpy-1.25.0_6,1.pkg [main-armv7-default-job-10] Installing py39-numpy-1.25.0_6,1... [main-armv7-default-job-10] `-- Installing gcc13-13.2.0_4... [main-armv7-default-job-10] | `-- Installing binutils-2.40_5,1... [main-armv7-default-job-10] | | `-- Installing gettext-runtime-0.22.3_1... [main-armv7-default-job-10] | | `-- Installing indexinfo-0.3.1... [main-armv7-default-job-10] | | `-- Extracting indexinfo-0.3.1: .... done [main-armv7-default-job-10] | | `-- Extracting gettext-runtime-0.22.3_1: .......... done [main-armv7-default-job-10] | | `-- Installing zstd-1.5.5_1... [main-armv7-default-job-10] | | `-- Installing liblz4-1.9.4_1,1... [main-armv7-default-job-10] | | `-- Extracting liblz4-1.9.4_1,1: .......... done [main-armv7-default-job-10] | | `-- Extracting zstd-1.5.5_1: .......... done [main-armv7-default-job-10] | `-- Extracting binutils-2.40_5,1: .......... done [main-armv7-default-job-10] | `-- Installing gmp-6.3.0... [main-armv7-default-job-10] | `-- Extracting gmp-6.3.0: .......... done [main-armv7-default-job-10] | `-- Installing mpc-1.3.1_1... [main-armv7-default-job-10] | | `-- Installing mpfr-4.2.1,1... [main-armv7-default-job-10] | | `-- Extracting mpfr-4.2.1,1: .......... done [main-armv7-default-job-10] | `-- Extracting mpc-1.3.1_1: ......... done [main-armv7-default-job-10] `-- Extracting gcc13-13.2.0_4: .......... done [main-armv7-default-job-10] `-- Installing openblas-0.3.25,2... [main-armv7-default-job-10] `-- Extracting openblas-0.3.25,2: .......... done [main-armv7-default-job-10] `-- Installing py39-setuptools-63.1.0_1... [main-armv7-default-job-10] | `-- Installing python39-3.9.18_1... [main-armv7-default-job-10] | | `-- Installing libffi-3.4.4_1... [main-armv7-default-job-10] | | `-- Extracting libffi-3.4.4_1: .......... done [main-armv7-default-job-10] | | `-- Installing mpdecimal-2.5.1... [main-armv7-default-job-10] | | `-- Extracting mpdecimal-2.5.1: .......... done [main-armv7-default-job-10] | | `-- Installing readline-8.2.7_1... [main-armv7-default-job-10] | | `-- Extracting readline-8.2.7_1: .......... done [main-armv7-default-job-10] | `-- Extracting python39-3.9.18_1: .......... done [main-armv7-default-job-10] `-- Extracting py39-setuptools-63.1.0_1: .......... done [main-armv7-default-job-10] `-- Installing suitesparse-umfpack-6.3.2... [main-armv7-default-job-10] | `-- Installing suitesparse-amd-3.3.1... [main-armv7-default-job-10] | | `-- Installing suitesparse-config-7.6.0... [main-armv7-default-job-10] | | `-- Extracting suitesparse-config-7.6.0: .......... done [main-armv7-default-job-10] | `-- Extracting suitesparse-amd-3.3.1: .......... done [main-armv7-default-job-10] | `-- Installing suitesparse-camd-3.3.1... [main-armv7-default-job-10] | `-- Extracting suitesparse-camd-3.3.1: .......... done [main-armv7-default-job-10] | `-- Installing suitesparse-ccolamd-3.3.2... [main-armv7-default-job-10] | `-- Extracting suitesparse-ccolamd-3.3.2: .......... done [main-armv7-default-job-10] | `-- Installing suitesparse-cholmod-5.2.0... [main-armv7-default-job-10] | | `-- Installing suitesparse-colamd-3.3.2... [main-armv7-default-job-10] | | `-- Extracting suitesparse-colamd-3.3.2: .......... done [main-armv7-default-job-10] | `-- Extracting suitesparse-cholmod-5.2.0: .......... done [main-armv7-default-job-10] `-- Extracting suitesparse-umfpack-6.3.2: .......... done [main-armv7-default-job-10] Extracting py39-numpy-1.25.0_6,1: .......... done ===== Message from gcc13-13.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python39-3.9.18_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> py39-bx-python-0.11.0 depends on package: py39-numpy>=1.16,1<1.26,1 - found ===> Returning to build of py39-bx-python-0.11.0 ===> py39-bx-python-0.11.0 depends on executable: cython-3.9 - not found ===> Installing existing package /packages/All/py39-cython-0.29.37.pkg [main-armv7-default-job-10] Installing py39-cython-0.29.37... [main-armv7-default-job-10] Extracting py39-cython-0.29.37: .......... done ===> py39-bx-python-0.11.0 depends on executable: cython-3.9 - found ===> Returning to build of py39-bx-python-0.11.0 ===> py39-bx-python-0.11.0 depends on package: py39-setuptools>=63.1.0 - found ===> py39-bx-python-0.11.0 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py39-bx-python-0.11.0 =>> Killing runaway build after 7200 seconds with no output