From nobody Thu Feb 22 06:51:32 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4TgP1x26XJz5C2LJ for ; Thu, 22 Feb 2024 06:51:33 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4TgP1x0Bd0z4Lp8 for ; Thu, 22 Feb 2024 06:51:33 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1708584693; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=nfrEFMHFJqy2wwhpvaz7hxMLR/50jK6o+8Lc4xr8y+k=; b=I2UkBpCCweXXfNjuliTM3NFFYEYhRvH4XBolzKPs1ZmMLdMA710/WblttbyJDom89nr8aH Z1poHv8E+MHezqTE/UI69L1I4AMa7ca+frFKWhpmsmotwK53ZV+WdSorJiZ6lVO4h40lKg GHh8HocPh721RrE69XDSDT5cEoyFbbD4+YsZodQFsOhlvE4A9ksX1YLd9XadLoOgJS6rzz hfFEJu/tF11Yd+NDTs3NZ8Cc3eSh6Zg91KpM6RAC7JnOuFYulUwJrTHbn8JHUeY1y2qwCe TKOrJ5WhFtUJfzZgUkGxKeiG3z2s4jiZuE8c+1Ins+CTPa6cCNZ/AMdWId2bmQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1708584693; a=rsa-sha256; cv=none; b=mcD2VrQ2a7lUY+7HbWqjWdlokEtboUBdEcimyPRCHlkz71gAzFf7Ny0V/r7am7Oimuipfz kTJYWzRY612q10CxoX6z/xqePcsxSrHaO9mNBPK+Fk20I4cgN5g4mnavQmEmZmORCzeZIL 798h8qMSc34NGCBnEHOq5wR42kD1cu5bIPlQBlFE++Q8D0bAfjneEOeDDkmL+/e835OLh5 HWxsOLqUGO5tupm/sZt7lTTkcDjP2tcmQlSK+Jjlh/ZasZ1Ift1bspLGYXmEP3K1wYpfFY 7oVuK46XiTNU4GfhwFvm2wWtCwz2bmuTiIkF0YP7qIuAV61FJ3v3C/2EHTKUhQ== Received: from ampere2.nyi.freebsd.org (ampere2.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:24]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4TgP1w6MWjzLxF for ; Thu, 22 Feb 2024 06:51:32 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 6a3f by ampere2.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on ampere2.nyi.freebsd.org); Thu, 22 Feb 2024 06:51:32 +0000 To: pkg-fallout@FreeBSD.org Subject: [package - main-armv7-default][biology/seqwish] Failed for seqwish-0.7.9 in configure Date: Thu, 22 Feb 2024 06:51:32 +0000 Message-Id: <65d6eef4.6a3f.6947813c@ampere2.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/pe9c9c73181b5_sbd45bbe440/logs/seqwish-0.7.9.log Build URL: https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=pe9c9c73181b5_sbd45bbe440 Log: =>> Building biology/seqwish build started at Thu Feb 22 06:51:26 UTC 2024 port directory: /usr/ports/biology/seqwish package name: seqwish-0.7.9 building for: FreeBSD main-armv7-default-job-11 15.0-CURRENT FreeBSD 15.0-CURRENT 1500014 arm maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 839 Nov 16 01:04 /usr/ports/biology/seqwish/Makefile Ports top last git commit: e9c9c73181b Ports top unclean checkout: no Port dir last git commit: 25d04c675ed Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1 Host OSVERSION: 1500006 Jail OSVERSION: 1500014 Job Id: 11 !!! Jail is newer than host. (Jail: 1500014, Host: 1500006) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500014 UNAME_v=FreeBSD 15.0-CURRENT 1500014 UNAME_r=15.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1 MASTERMNT=/usr/local/poudriere/data/.m/main-armv7-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-armv7-default/11/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=main-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for seqwish-0.7.9: OPENMP=on: Parallel processing support via OpenMP ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install - m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seqwish" EXAMPLESDIR="share/examples/seqwish" DATADIR="share/seqwish" WWWDIR="www/seqwish" ETCDIR="etc/seqwish" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seqwish DOCSDIR=/usr/local/share/doc/seqwish EXAMPLESDIR=/usr/local/share/examples/seqwish WWWDIR=/usr/local/www/seqwish ETCDIR=/usr/local/etc/seqwish --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seqwish-0.7.9 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [main-armv7-default-job-11] Installing pkg-1.20.9_1... [main-armv7-default-job-11] Extracting pkg-1.20.9_1: .......... done ===> seqwish-0.7.9 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of seqwish-0.7.9 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by seqwish-0.7.9 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by seqwish-0.7.9 for building => SHA256 Checksum OK for seqwish-v0.7.9.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by seqwish-0.7.9 for building ===> Extracting for seqwish-0.7.9 => SHA256 Checksum OK for seqwish-v0.7.9.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for seqwish-0.7.9 ===> Applying FreeBSD patches for seqwish-0.7.9 from /usr/ports/biology/seqwish/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seqwish-0.7.9 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.28.3.pkg [main-armv7-default-job-11] Installing cmake-core-3.28.3... [main-armv7-default-job-11] `-- Installing expat-2.5.0_1... [main-armv7-default-job-11] `-- Extracting expat-2.5.0_1: .......... done [main-armv7-default-job-11] `-- Installing jsoncpp-1.9.5... [main-armv7-default-job-11] `-- Extracting jsoncpp-1.9.5: .......... done [main-armv7-default-job-11] `-- Installing libuv-1.48.0... [main-armv7-default-job-11] `-- Extracting libuv-1.48.0: .......... done [main-armv7-default-job-11] `-- Installing rhash-1.4.4_1... [main-armv7-default-job-11] | `-- Installing gettext-runtime-0.22.3_1... [main-armv7-default-job-11] | | `-- Installing indexinfo-0.3.1... [main-armv7-default-job-11] | | `-- Extracting indexinfo-0.3.1: .... done [main-armv7-default-job-11] | `-- Extracting gettext-runtime-0.22.3_1: .......... done [main-armv7-default-job-11] `-- Extracting rhash-1.4.4_1: .......... done [main-armv7-default-job-11] Extracting cmake-core-3.28.3: .......... done ===> seqwish-0.7.9 depends on file: /usr/local/bin/cmake - found ===> Returning to build of seqwish-0.7.9 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for seqwish-0.7.9 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/seqwish/work/.build CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is Clang 17.0.6 -- The CXX compiler identification is Clang 17.0.6 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - failed -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - broken CMake Error at /usr/local/share/cmake/Modules/CMakeTestCXXCompiler.cmake:60 (message): The C++ compiler "/usr/bin/c++" is not able to compile a simple test program. It fails with the following output: Change Dir: '/wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/CMakeScratch/TryCompile-bpr5Oa' Run Build Command(s): /usr/local/bin/cmake -E env VERBOSE=1 /usr/bin/make -f Makefile cmTC_6e084/fast /usr/bin/make -f CMakeFiles/cmTC_6e084.dir/build.make CMakeFiles/cmTC_6e084.dir/build Building CXX object CMakeFiles/cmTC_6e084.dir/testCXXCompiler.cxx.o /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp -MD -MT CMakeFiles/cmTC_6e084.dir/testCXXCompiler.cxx.o -MF CMakeFiles/cmTC_6e084.dir/testCXXCompiler.cxx.o.d -o CMakeFiles/cmTC_6e084.dir/testCXXCompiler.cxx.o -c /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/CMakeScratch/TryCompile-bpr5Oa/testCXXCompiler.cxx Linking CXX executable cmTC_6e084 /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_6e084.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp CMakeFiles/cmTC_6e084.dir/testCXXCompiler.cxx.o -o cmTC_6e084 ld: error: unable to find library -lomp c++: error: linker command failed with exit code 1 (use -v to see invocation) *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/CMakeScratch/TryCompile-bpr5Oa *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/CMakeScratch/TryCompile-bpr5Oa CMake will not be able to correctly generate this project. Call Stack (most recent call first): CMakeLists.txt:6 (project) -- Configuring incomplete, errors occurred! *** Error code 1 Stop. make: stopped in /usr/ports/biology/seqwish