[package - main-powerpc64le-default][biology/ngs-sdk] Failed for ngs-sdk-3.0.1 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Tue, 06 Feb 2024 05:52:18 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/foul2/data/main-powerpc64le-default/pe72d10c28234_s4347ef6050/logs/ngs-sdk-3.0.1.log
Build URL:      https://pkg-status.freebsd.org/foul2/build.html?mastername=main-powerpc64le-default&build=pe72d10c28234_s4347ef6050
Log:

=>> Building biology/ngs-sdk
build started at Tue Feb  6 05:51:39 UTC 2024
port directory: /usr/ports/biology/ngs-sdk
package name: ngs-sdk-3.0.1
building for: FreeBSD main-powerpc64le-default-job-11 15.0-CURRENT FreeBSD 15.0-CURRENT 1500008 powerpc
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r--  1 root wheel 1625 Jun 27  2023 /usr/ports/biology/ngs-sdk/Makefile
Ports top last git commit: e72d10c282
Ports top unclean checkout: no
Port dir last git commit: 3b489c6e56
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1
Host OSVERSION: 1500000
Jail OSVERSION: 1500008
Job Id: 11




!!! Jail is newer than host. (Jail: 1500008, Host: 1500000) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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SHELL=/bin/sh
OSVERSION=1500008
UNAME_v=FreeBSD 15.0-CURRENT 1500008
UNAME_r=15.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.1
MASTERMNT=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/main-powerpc64le-default/11/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
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OLDPWD=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.1
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local" --build-prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build"
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work  XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work/.cache  HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ngs-sdk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work  XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work/.cache  HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ngs-sdk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  " BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="instal
 l  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3  PERL_VER=5.36  PERL5_MAN1=lib/perl5/site_perl/man/man1  PERL5_MAN3=lib/perl5/site_perl/man/man3  SITE_PERL=lib/perl5/site_perl  SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/ngs"  EXAMPLESDIR="share/examples/ngs"  DATADIR="share/ngs"  WWWDIR="www/ngs"  ETCDIR="etc/ngs"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/ngs DOCSDIR=/usr/local/share/doc/ngs EXAMPLESDIR=/usr/local/share/examples/ngs  WWWDIR=/usr/local/www/ngs ETCDIR=/usr/local/etc/ngs
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
####  ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  8192
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   ngs-sdk-3.0.1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.20.9_1.pkg
[main-powerpc64le-default-job-11] Installing pkg-1.20.9_1...
[main-powerpc64le-default-job-11] Extracting pkg-1.20.9_1: .......... done
===>   ngs-sdk-3.0.1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of ngs-sdk-3.0.1
===========================================================================
=======================<phase: fetch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-3.0.1 for building
===========================================================================
=======================<phase: checksum       >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-3.0.1 for building
=> SHA256 Checksum OK for ncbi-ngs-3.0.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract        >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-3.0.1 for building
===>  Extracting for ngs-sdk-3.0.1
=> SHA256 Checksum OK for ncbi-ngs-3.0.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Patching for ngs-sdk-3.0.1
===>  Applying FreeBSD patches for ngs-sdk-3.0.1 from /usr/ports/biology/ngs-sdk/files
===========================================================================
=======================<phase: build-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   ngs-sdk-3.0.1 depends on package: gmake>=4.3 - not found
===>   Installing existing package /packages/All/gmake-4.3_3.pkg
[main-powerpc64le-default-job-11] Installing gmake-4.3_3...
[main-powerpc64le-default-job-11] `-- Installing gettext-runtime-0.22.3_1...
[main-powerpc64le-default-job-11] |   `-- Installing indexinfo-0.3.1...
[main-powerpc64le-default-job-11] |   `-- Extracting indexinfo-0.3.1: .... done
[main-powerpc64le-default-job-11] `-- Extracting gettext-runtime-0.22.3_1: .......... done
[main-powerpc64le-default-job-11] Extracting gmake-4.3_3: .......... done
===>   ngs-sdk-3.0.1 depends on package: gmake>=4.3 - found
===>   Returning to build of ngs-sdk-3.0.1
===>   ngs-sdk-3.0.1 depends on package: perl5>=5.36<5.37 - not found
===>   Installing existing package /packages/All/perl5-5.36.3_1.pkg
[main-powerpc64le-default-job-11] Installing perl5-5.36.3_1...
[main-powerpc64le-default-job-11] Extracting perl5-5.36.3_1: .......... done
===>   ngs-sdk-3.0.1 depends on package: perl5>=5.36<5.37 - found
===>   Returning to build of ngs-sdk-3.0.1
===========================================================================
=======================<phase: lib-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure      >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Configuring for ngs-sdk-3.0.1
CONFIGURING ngs-sdk
Configuring NGS-SDK package
checking system type... FreeBSD
checking machine architecture... powerpc
configure: error: unsupported architecture 'FreeBSD':'powerpc'

CONFIGURING ngs-java
Configuring NGS-JAVA package
checking system type... FreeBSD
checking machine architecture... powerpc
configure: error: unsupported architecture 'FreeBSD':'powerpc'

CONFIGURING ngs-python
Configuring NGS-PYTHON package
checking system type... FreeBSD
checking machine architecture... powerpc
configure: error: unsupported architecture 'FreeBSD':'powerpc'

===========================================================================
=======================<phase: build          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Building for ngs-sdk-3.0.1
gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1'
gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk'
*** File 'Makefile.config.FreeBSD.powerpc' is missing. Please run ./configure
gmake[2]: *** [/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/Makefile.rules:72: Makefile.config.FreeBSD.powerpc] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk'
gmake[1]: *** [Makefile:54: ngs-sdk] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/ngs-sdk