[package - 140amd64-default][science/py-meshio] Failed for py39-meshio-5.3.5 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Sun, 04 Feb 2024 21:55:14 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     thierry@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/beefy12/data/140amd64-default/3f853a69d83c/logs/py39-meshio-5.3.5.log
Build URL:      https://pkg-status.freebsd.org/beefy12/build.html?mastername=140amd64-default&build=3f853a69d83c
Log:

=>> Building science/py-meshio
build started at Sun Feb  4 21:55:07 UTC 2024
port directory: /usr/ports/science/py-meshio
package name: py39-meshio-5.3.5
building for: FreeBSD 140amd64-default-job-06 14.0-RELEASE-p4 FreeBSD 14.0-RELEASE-p4 amd64
maintained by: thierry@FreeBSD.org
Makefile datestamp: -rw-r--r--  1 root wheel 665 Feb  3 01:01 /usr/ports/science/py-meshio/Makefile
Ports top last git commit: 3f853a69d8
Ports top unclean checkout: no
Port dir last git commit: a2b33f94ae
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1
Host OSVERSION: 1500006
Jail OSVERSION: 1400097
Job Id: 06

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---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
thierry@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-meshio/work-py39  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-meshio/work-py39  XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-meshio/work-py39/.cache  HOME=/wrkdirs/usr/ports/science/py-meshio/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-meshio/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-meshio/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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--End PLIST_SUB--

--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.9  PYTHON_LIBDIR=/usr/local/lib/python3.9  PYTHON_PLATFORM=freebsd14  PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages  PYTHON_SUFFIX=39  PYTHON_EXT_SUFFIX=.cpython-39  PYTHON_VER=3.9  PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/meshio DOCSDIR=/usr/local/share/doc/meshio EXAMPLESDIR=/usr/local/share/examples/meshio  WWWDIR=/usr/local/www/meshio ETCDIR=/usr/local/etc/meshio
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USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
####  ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
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=======================<phase: check-sanity   >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py39-meshio-5.3.5 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.20.9_1.pkg
[140amd64-default-job-06] Installing pkg-1.20.9_1...
[140amd64-default-job-06] Extracting pkg-1.20.9_1: .......... done
===>   py39-meshio-5.3.5 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py39-meshio-5.3.5
===========================================================================
=======================<phase: fetch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License MIT accepted by the user
=> meshio-5.3.5.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://files.pythonhosted.org/packages/source/m/meshio/meshio-5.3.5.tar.gz
meshio-5.3.5.tar.gz                                    479 kB   50 MBps    00s
===> Fetching all distfiles required by py39-meshio-5.3.5 for building
===========================================================================
=======================<phase: checksum       >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License MIT accepted by the user
===> Fetching all distfiles required by py39-meshio-5.3.5 for building
=> SHA256 Checksum OK for meshio-5.3.5.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract        >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License MIT accepted by the user
===> Fetching all distfiles required by py39-meshio-5.3.5 for building
===>  Extracting for py39-meshio-5.3.5
=> SHA256 Checksum OK for meshio-5.3.5.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Patching for py39-meshio-5.3.5
===========================================================================
=======================<phase: build-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py39-meshio-5.3.5 depends on package: py39-numpy>=1.16,1<1.26,1 - not found
===>   Installing existing package /packages/All/py39-numpy-1.25.0_6,1.pkg
[140amd64-default-job-06] Installing py39-numpy-1.25.0_6,1...
[140amd64-default-job-06] `-- Installing gcc12-12.2.0_8...
[140amd64-default-job-06] |   `-- Installing binutils-2.40_5,1...
[140amd64-default-job-06] |   | `-- Installing gettext-runtime-0.22.3_1...
[140amd64-default-job-06] |   |   `-- Installing indexinfo-0.3.1...
[140amd64-default-job-06] |   |   `-- Extracting indexinfo-0.3.1: .... done
[140amd64-default-job-06] |   | `-- Extracting gettext-runtime-0.22.3_1: .......... done
[140amd64-default-job-06] |   | `-- Installing zstd-1.5.5_1...
[140amd64-default-job-06] |   |   `-- Installing liblz4-1.9.4_1,1...
[140amd64-default-job-06] |   |   `-- Extracting liblz4-1.9.4_1,1: .......... done
[140amd64-default-job-06] |   | `-- Extracting zstd-1.5.5_1: .......... done
[140amd64-default-job-06] |   `-- Extracting binutils-2.40_5,1: .......... done
[140amd64-default-job-06] |   `-- Installing gmp-6.3.0...
[140amd64-default-job-06] |   `-- Extracting gmp-6.3.0: .......... done
[140amd64-default-job-06] |   `-- Installing mpc-1.3.1_1...
[140amd64-default-job-06] |   | `-- Installing mpfr-4.2.1,1...
[140amd64-default-job-06] |   | `-- Extracting mpfr-4.2.1,1: .......... done
[140amd64-default-job-06] |   `-- Extracting mpc-1.3.1_1: ......... done
[140amd64-default-job-06] `-- Extracting gcc12-12.2.0_8: .......... done
[140amd64-default-job-06] `-- Installing openblas-0.3.25,2...
[140amd64-default-job-06] `-- Extracting openblas-0.3.25,2: .......... done
[140amd64-default-job-06] `-- Installing py39-setuptools-63.1.0_1...
[140amd64-default-job-06] |   `-- Installing python39-3.9.18_1...
[140amd64-default-job-06] |   | `-- Installing libffi-3.4.4_1...
[140amd64-default-job-06] |   | `-- Extracting libffi-3.4.4_1: .......... done
[140amd64-default-job-06] |   | `-- Installing mpdecimal-2.5.1...
[140amd64-default-job-06] |   | `-- Extracting mpdecimal-2.5.1: .......... done
[140amd64-default-job-06] |   | `-- Installing readline-8.2.7_1...
[140amd64-default-job-06] |   | `-- Extracting readline-8.2.7_1: .......... done
[140amd64-default-job-06] |   `-- Extracting python39-3.9.18_1: .......... done
[140amd64-default-job-06] `-- Extracting py39-setuptools-63.1.0_1: .......... done
[140amd64-default-job-06] `-- Installing suitesparse-umfpack-6.3.2...
[140amd64-default-job-06] |   `-- Installing suitesparse-amd-3.3.1...
[140amd64-default-job-06] |   | `-- Installing suitesparse-config-7.6.0...
[140amd64-default-job-06] |   | `-- Extracting suitesparse-config-7.6.0: .......... done
[140amd64-default-job-06] |   `-- Extracting suitesparse-amd-3.3.1: .......... done
[140amd64-default-job-06] |   `-- Installing suitesparse-camd-3.3.1...
[140amd64-default-job-06] |   `-- Extracting suitesparse-camd-3.3.1: .......... done
[140amd64-default-job-06] |   `-- Installing suitesparse-ccolamd-3.3.2...
[140amd64-default-job-06] |   `-- Extracting suitesparse-ccolamd-3.3.2: .......... done
[140amd64-default-job-06] |   `-- Installing suitesparse-cholmod-5.2.0...
[140amd64-default-job-06] |   | `-- Installing suitesparse-colamd-3.3.2...
[140amd64-default-job-06] |   | `-- Extracting suitesparse-colamd-3.3.2: .......... done
[140amd64-default-job-06] |   `-- Extracting suitesparse-cholmod-5.2.0: .......... done
[140amd64-default-job-06] `-- Extracting suitesparse-umfpack-6.3.2: .......... done
[140amd64-default-job-06] Extracting py39-numpy-1.25.0_6,1: .......... done
=====
Message from gcc12-12.2.0_8:

--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc12

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python39-3.9.18_1:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py39-gdbm       databases/py-gdbm@py39
py39-sqlite3    databases/py-sqlite3@py39
py39-tkinter    x11-toolkits/py-tkinter@py39
===>   py39-meshio-5.3.5 depends on package: py39-numpy>=1.16,1<1.26,1 - found
===>   Returning to build of py39-meshio-5.3.5
===>   py39-meshio-5.3.5 depends on package: py39-h5py>0 - not found
===>   Installing existing package /packages/All/py39-h5py-3.10.0.pkg
[140amd64-default-job-06] Installing py39-h5py-3.10.0...
[140amd64-default-job-06] `-- Installing hdf5-1.12.2_2,1...
[140amd64-default-job-06] |   `-- Installing libaec-1.1.2...
[140amd64-default-job-06] |   `-- Extracting libaec-1.1.2: .......... done
[140amd64-default-job-06] `-- Extracting hdf5-1.12.2_2,1: .......... done
[140amd64-default-job-06] Extracting py39-h5py-3.10.0: .......... done
===>   py39-meshio-5.3.5 depends on package: py39-h5py>0 - found
===>   Returning to build of py39-meshio-5.3.5
===>   py39-meshio-5.3.5 depends on file: /usr/local/bin/python3.9 - found
===>   py39-meshio-5.3.5 depends on package: py39-build>=0 - not found
===>   Installing existing package /packages/All/py39-build-0.10.0_2.pkg
[140amd64-default-job-06] Installing py39-build-0.10.0_2...
[140amd64-default-job-06] `-- Installing py39-packaging-23.2...
[140amd64-default-job-06] `-- Extracting py39-packaging-23.2: .......... done
[140amd64-default-job-06] `-- Installing py39-pyproject_hooks-1.0.0_2...
[140amd64-default-job-06] |   `-- Installing py39-tomli-2.0.1_2...
[140amd64-default-job-06] |   `-- Extracting py39-tomli-2.0.1_2: .......... done
[140amd64-default-job-06] `-- Extracting py39-pyproject_hooks-1.0.0_2: .......... done
[140amd64-default-job-06] Extracting py39-build-0.10.0_2: .......... done
===>   py39-meshio-5.3.5 depends on package: py39-build>=0 - found
===>   Returning to build of py39-meshio-5.3.5
===>   py39-meshio-5.3.5 depends on package: py39-installer>=0 - not found
===>   Installing existing package /packages/All/py39-installer-0.7.0.pkg
[140amd64-default-job-06] Installing py39-installer-0.7.0...
[140amd64-default-job-06] Extracting py39-installer-0.7.0: .......... done
===>   py39-meshio-5.3.5 depends on package: py39-installer>=0 - found
===>   Returning to build of py39-meshio-5.3.5
===========================================================================
=======================<phase: lib-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure      >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Configuring for py39-meshio-5.3.5
===========================================================================
=======================<phase: build          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Building for py39-meshio-5.3.5
* Getting build dependencies for wheel...
running egg_info
writing src/meshio.egg-info/PKG-INFO
writing dependency_links to src/meshio.egg-info/dependency_links.txt
writing entry points to src/meshio.egg-info/entry_points.txt
writing requirements to src/meshio.egg-info/requires.txt
writing top-level names to src/meshio.egg-info/top_level.txt
reading manifest file 'src/meshio.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.txt'
writing manifest file 'src/meshio.egg-info/SOURCES.txt'

ERROR Missing dependencies:
	wheel
*** Error code 1

Stop.
make: stopped in /usr/ports/science/py-meshio