[package - 133releng-armv7-quarterly][science/qmcpack] Failed for qmcpack-3.15.0_5 in configure
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Date: Wed, 11 Dec 2024 23:35:09 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere1/data/133releng-armv7-quarterly/e17ba537c699/logs/qmcpack-3.15.0_5.log
Build URL: https://pkg-status.freebsd.org/ampere1/build.html?mastername=133releng-armv7-quarterly&build=e17ba537c699
Log:
=>> Building science/qmcpack
build started at Wed Dec 11 23:34:17 UTC 2024
port directory: /usr/ports/science/qmcpack
package name: qmcpack-3.15.0_5
building for: FreeBSD 133releng-armv7-quarterly-job-02 13.3-RELEASE-p8 FreeBSD 13.3-RELEASE-p8 1303001 arm
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1908 Oct 15 01:02 /usr/ports/science/qmcpack/Makefile
Ports top last git commit: e17ba537c
Ports top unclean checkout: no
Port dir last git commit: db5128afd
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500028
Jail OSVERSION: 1303001
Job Id: 02
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PORT_FLAGS=
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---Begin OPTIONS List---
===> The following configuration options are available for qmcpack-3.15.0_5:
NEXUS=on: Install Nexus (workflow utility) alongside QMCPACK
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/qmcpack/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/qmcpack/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/qmcpack/work/.cache HOME=/wrkdirs/usr/ports/science/qmcpack/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/qmcpack/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/qmcpack/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
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--MAKE_ENV--
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local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
NEXUS="" NO_NEXUS="@comment " CMAKE_BUILD_TYPE="release" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" GTK4_VERSION="4.0.0" PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=13.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/qmcpack" EXAMPLESDIR="share/examples/qmcpack" DATADIR="share/qmcpack" WWWDIR="www/qmcpack" ETCDIR="etc/qmcpack"
--End PLIST_SUB--
--SUB_LIST--
NEXUS="" NO_NEXUS="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/qmcpack DOCSDIR=/usr/local/share/doc/qmcpack EXAMPLESDIR=/usr/local/share/examples/qmcpack WWWDIR=/usr/local/www/qmcpack ETCDIR=/usr/local/etc/qmcpack
--End SUB_LIST--
---Begin make.conf---
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> qmcpack-3.15.0_5 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[133releng-armv7-quarterly-job-02] Installing pkg-1.21.3...
[133releng-armv7-quarterly-job-02] Extracting pkg-1.21.3: .......... done
===> qmcpack-3.15.0_5 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of qmcpack-3.15.0_5
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by qmcpack-3.15.0_5 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by qmcpack-3.15.0_5 for building
=> SHA256 Checksum OK for QMCPACK-qmcpack-v3.15.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by qmcpack-3.15.0_5 for building
===> Extracting for qmcpack-3.15.0_5
=> SHA256 Checksum OK for QMCPACK-qmcpack-v3.15.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for qmcpack-3.15.0_5
===> Applying FreeBSD patches for qmcpack-3.15.0_5 from /usr/ports/science/qmcpack/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> qmcpack-3.15.0_5 depends on package: py311-numpy>=1.16,1<1.27,1 - not found
===> Installing existing package /packages/All/py311-numpy-1.26.4_2,1.pkg
[133releng-armv7-quarterly-job-02] Installing py311-numpy-1.26.4_2,1...
[133releng-armv7-quarterly-job-02] `-- Installing gcc13-13.3.0...
[133releng-armv7-quarterly-job-02] | `-- Installing binutils-2.43.1,1...
[133releng-armv7-quarterly-job-02] | | `-- Installing indexinfo-0.3.1...
[133releng-armv7-quarterly-job-02] | | `-- Extracting indexinfo-0.3.1: .... done
[133releng-armv7-quarterly-job-02] | | `-- Installing zstd-1.5.6...
[133releng-armv7-quarterly-job-02] | | `-- Installing liblz4-1.10.0,1...
[133releng-armv7-quarterly-job-02] | | `-- Extracting liblz4-1.10.0,1: .......... done
[133releng-armv7-quarterly-job-02] | | `-- Extracting zstd-1.5.6: .......... done
[133releng-armv7-quarterly-job-02] | `-- Extracting binutils-2.43.1,1: .......... done
[133releng-armv7-quarterly-job-02] | `-- Installing gmp-6.3.0...
[133releng-armv7-quarterly-job-02] | `-- Extracting gmp-6.3.0: .......... done
[133releng-armv7-quarterly-job-02] | `-- Installing mpc-1.3.1_1...
[133releng-armv7-quarterly-job-02] | | `-- Installing mpfr-4.2.1,1...
<snip>
--
Install math/py-statsmodels to enable parts of pandas.stats.
Install devel/py-xarray to enable the to_xarray() function.
===> qmcpack-3.15.0_5 depends on package: py311-pandas>0 - found
===> Returning to build of qmcpack-3.15.0_5
===> qmcpack-3.15.0_5 depends on package: py311-pyscf>0 - not found
===> Installing existing package /packages/All/py311-pyscf-2.7.0.pkg
[133releng-armv7-quarterly-job-02] Installing py311-pyscf-2.7.0...
[133releng-armv7-quarterly-job-02] `-- Installing libcint-6.1.2_1...
[133releng-armv7-quarterly-job-02] `-- Extracting libcint-6.1.2_1: ........ done
[133releng-armv7-quarterly-job-02] `-- Installing libxc-6.2.2...
[133releng-armv7-quarterly-job-02] `-- Extracting libxc-6.2.2: .......... done
[133releng-armv7-quarterly-job-02] `-- Installing py311-scipy-1.11.1_1,1...
[133releng-armv7-quarterly-job-02] | `-- Installing blas-3.12.0_1...
[133releng-armv7-quarterly-job-02] | `-- Extracting blas-3.12.0_1: ........ done
[133releng-armv7-quarterly-job-02] `-- Extracting py311-scipy-1.11.1_1,1: .......... done
[133releng-armv7-quarterly-job-02] `-- Installing xcfun-2.1.1.1...
[133releng-armv7-quarterly-job-02] `-- Extracting xcfun-2.1.1.1: .......... done
[133releng-armv7-quarterly-job-02] Extracting py311-pyscf-2.7.0: .......... done
===> qmcpack-3.15.0_5 depends on package: py311-pyscf>0 - found
===> Returning to build of qmcpack-3.15.0_5
===> qmcpack-3.15.0_5 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.30.5.pkg
[133releng-armv7-quarterly-job-02] Installing cmake-core-3.30.5...
[133releng-armv7-quarterly-job-02] `-- Installing expat-2.6.3...
[133releng-armv7-quarterly-job-02] `-- Extracting expat-2.6.3: .......... done
[133releng-armv7-quarterly-job-02] `-- Installing jsoncpp-1.9.6_1...
[133releng-armv7-quarterly-job-02] `-- Extracting jsoncpp-1.9.6_1: .......... done
[133releng-armv7-quarterly-job-02] `-- Installing libuv-1.49.0...
[133releng-armv7-quarterly-job-02] `-- Extracting libuv-1.49.0: .......... done
[133releng-armv7-quarterly-job-02] `-- Installing rhash-1.4.4_1...
[133releng-armv7-quarterly-job-02] `-- Extracting rhash-1.4.4_1: .......... done
[133releng-armv7-quarterly-job-02] Extracting cmake-core-3.30.5: .......... done
===> qmcpack-3.15.0_5 depends on file: /usr/local/bin/cmake - found
===> Returning to build of qmcpack-3.15.0_5
===> qmcpack-3.15.0_5 depends on executable: gfortran13 - found
===> qmcpack-3.15.0_5 depends on package: pkgconf>=1.3.0_1 - not found
===> Installing existing package /packages/All/pkgconf-2.3.0,1.pkg
[133releng-armv7-quarterly-job-02] Installing pkgconf-2.3.0,1...
[133releng-armv7-quarterly-job-02] Extracting pkgconf-2.3.0,1: .......... done
===> qmcpack-3.15.0_5 depends on package: pkgconf>=1.3.0_1 - found
===> Returning to build of qmcpack-3.15.0_5
===> qmcpack-3.15.0_5 depends on file: /usr/local/bin/python3.11 - found
===> qmcpack-3.15.0_5 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> qmcpack-3.15.0_5 depends on shared library: libboost_system.so - not found
===> Installing existing package /packages/All/boost-libs-1.85.0.pkg
[133releng-armv7-quarterly-job-02] Installing boost-libs-1.85.0...
[133releng-armv7-quarterly-job-02] `-- Installing icu-74.2_1,1...
[133releng-armv7-quarterly-job-02] `-- Extracting icu-74.2_1,1: .......... done
[133releng-armv7-quarterly-job-02] Extracting boost-libs-1.85.0: .......... done
=====
Message from boost-libs-1.85.0:
--
You have built the Boost library with thread support.
Don't forget to add -pthread to your linker options when
linking your code.
===> qmcpack-3.15.0_5 depends on shared library: libboost_system.so - found (/usr/local/lib/libboost_system.so)
===> Returning to build of qmcpack-3.15.0_5
===> qmcpack-3.15.0_5 depends on shared library: libfftw3.so - not found
===> Installing existing package /packages/All/fftw3-3.3.10_5.pkg
[133releng-armv7-quarterly-job-02] Installing fftw3-3.3.10_5...
[133releng-armv7-quarterly-job-02] Extracting fftw3-3.3.10_5: .......... done
===> qmcpack-3.15.0_5 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so)
===> Returning to build of qmcpack-3.15.0_5
===> qmcpack-3.15.0_5 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so)
===> qmcpack-3.15.0_5 depends on shared library: libmpich.so - not found
===> Installing existing package /packages/All/mpich-4.2.3.pkg
[133releng-armv7-quarterly-job-02] Installing mpich-4.2.3...
[133releng-armv7-quarterly-job-02] `-- Installing hwloc2-2.11.2...
[133releng-armv7-quarterly-job-02] | `-- Installing level-zero-1.17.45...
[133releng-armv7-quarterly-job-02] | | `-- Installing libfmt-10.2.1...
[133releng-armv7-quarterly-job-02] | | `-- Extracting libfmt-10.2.1: .......... done
[133releng-armv7-quarterly-job-02] | | `-- Installing spdlog-1.14.1...
[133releng-armv7-quarterly-job-02] | | `-- Extracting spdlog-1.14.1: .......... done
[133releng-armv7-quarterly-job-02] | `-- Extracting level-zero-1.17.45: .......... done
[133releng-armv7-quarterly-job-02] | `-- Installing libpciaccess-0.18.1...
[133releng-armv7-quarterly-job-02] | `-- Extracting libpciaccess-0.18.1: ........ done
[133releng-armv7-quarterly-job-02] | `-- Installing libxml2-2.11.9...
[133releng-armv7-quarterly-job-02] | `-- Extracting libxml2-2.11.9: .......... done
[133releng-armv7-quarterly-job-02] `-- Extracting hwloc2-2.11.2: .......... done
[133releng-armv7-quarterly-job-02] `-- Installing json-c-0.18...
[133releng-armv7-quarterly-job-02] `-- Extracting json-c-0.18: .......... done
[133releng-armv7-quarterly-job-02] `-- Installing libepoll-shim-0.0.20240608...
[133releng-armv7-quarterly-job-02] `-- Extracting libepoll-shim-0.0.20240608: .......... done
[133releng-armv7-quarterly-job-02] `-- Installing libfabric-1.15.1_2...
[133releng-armv7-quarterly-job-02] `-- Extracting libfabric-1.15.1_2: .......... done
[133releng-armv7-quarterly-job-02] `-- Installing perl5-5.36.3_2...
[133releng-armv7-quarterly-job-02] `-- Extracting perl5-5.36.3_2: .......... done
[133releng-armv7-quarterly-job-02] Extracting mpich-4.2.3: .......... done
===> qmcpack-3.15.0_5 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so)
===> Returning to build of qmcpack-3.15.0_5
===> qmcpack-3.15.0_5 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===> qmcpack-3.15.0_5 depends on shared library: libsz.so - found (/usr/local/lib/libsz.so)
===> qmcpack-3.15.0_5 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so)
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for qmcpack-3.15.0_5
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/qmcpack/work/.build
-- The C compiler identification is Clang 17.0.6
-- The CXX compiler identification is Clang 17.0.6
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Defining the float point precision
Base precision = double
Full precision = double
-- CMAKE_BUILD_TYPE is RELEASE
-- Enable sanitizer ENABLE_SANITIZER=none
-- Trying to figure out compiler options ....
-- C++ Compiler is identified by QMCPACK as : Clang
-- QMCPACK adds -fstandalone-debug for Debug builds
-- libstdc++/C++ compiler version compatibility check failed
CMake Error at CMake/Testlibstdc++.cmake:17 (message):
Change Dir:
'/wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp'
Run Build Command(s): /usr/local/bin/cmake -E env VERBOSE=1 /usr/bin/make
-f Makefile cmTC_47edc/fast
/usr/bin/make -f CMakeFiles/cmTC_47edc.dir/build.make
CMakeFiles/cmTC_47edc.dir/build
Building CXX object CMakeFiles/cmTC_47edc.dir/check_libstdcxx.cpp.o
/usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include
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-Wvla -Wall -Wno-unused-variable -Wno-overloaded-virtual
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CMakeFiles/cmTC_47edc.dir/check_libstdcxx.cpp.o.d -o
CMakeFiles/cmTC_47edc.dir/check_libstdcxx.cpp.o -c
/wrkdirs/usr/ports/science/qmcpack/work/qmcpack-3.15.0/CMake/try_compile_sources/check_libstdcxx.cpp
Linking CXX executable cmTC_47edc
/usr/local/bin/cmake -E cmake_link_script
CMakeFiles/cmTC_47edc.dir/link.txt --verbose=1
/usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include
-fno-strict-aliasing -isystem /usr/local/include -fopenmp -fstrict-aliasing
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CMakeFiles/cmTC_47edc.dir/check_libstdcxx.cpp.o -o cmTC_47edc
ld: error: unable to find library -lomp
c++: error: linker command failed with exit code 1 (use -v to see
invocation)
*** Error code 1
Stop.
make[1]: stopped in
/wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp
*** Error code 1
Stop.
make: stopped in
/wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp
Call Stack (most recent call first):
CMakeLists.txt:292 (include)
-- Configuring incomplete, errors occurred!
*** Error code 1
Stop.
make: stopped in /usr/ports/science/qmcpack