[package - main-amd64-default][science/py-segyio] Failed for py311-segyio-1.9.12 in configure
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Date: Sun, 01 Dec 2024 13:04:45 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/p0843df7824bf_sedfccce309a/logs/py311-segyio-1.9.12.log
Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=p0843df7824bf_sedfccce309a
Log:
=>> Building science/py-segyio
build started at Sun Dec 1 13:04:40 UTC 2024
port directory: /usr/ports/science/py-segyio
package name: py311-segyio-1.9.12
building for: FreeBSD main-amd64-default-job-12 15.0-CURRENT FreeBSD 15.0-CURRENT 1500028 amd64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1264 Apr 9 2024 /usr/ports/science/py-segyio/Makefile
Ports top last git commit: 0843df7824b
Ports top unclean checkout: no
Port dir last git commit: d712362aa80
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500023
Jail OSVERSION: 1500028
Job Id: 12
!!! Jail is newer than host. (Jail: 1500028, Host: 1500023) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
OSVERSION=1500028
UNAME_v=FreeBSD 15.0-CURRENT 1500028
UNAME_r=15.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.2
MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/main-amd64-default/12/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=main-amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
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OLDPWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.2
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=py311
MAKE_ARGS= FLAVOR=py311
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-segyio/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-segyio/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-segyio/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-segyio/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-segyio/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-segyio/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-segyio/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-segyio/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-segyio/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-segyio/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-segyio/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-segyio/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD
_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/segyio" EXAMPLESDIR="share/examples/segyio" DATADIR="share/segyio" WWWDIR="www/segyio" ETCDIR="etc/segyio"
--End PLIST_SUB--
--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/segyio DOCSDIR=/usr/local/share/doc/segyio EXAMPLESDIR=/usr/local/share/examples/segyio WWWDIR=/usr/local/www/segyio ETCDIR=/usr/local/etc/segyio
--End SUB_LIST--
---Begin make.conf---
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
ulimit: can't get limit: Invalid argument
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL3+ accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-segyio-1.9.12 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[main-amd64-default-job-12] Installing pkg-1.21.3...
[main-amd64-default-job-12] Extracting pkg-1.21.3: .......... done
===> py311-segyio-1.9.12 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py311-segyio-1.9.12
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL3+ accepted by the user
===> Fetching all distfiles required by py311-segyio-1.9.12 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL3+ accepted by the user
===> Fetching all distfiles required by py311-segyio-1.9.12 for building
=> SHA256 Checksum OK for equinor-segyio-v1.9.12_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL3+ accepted by the user
===> Fetching all distfiles required by py311-segyio-1.9.12 for building
===> Extracting for py311-segyio-1.9.12
=> SHA256 Checksum OK for equinor-segyio-v1.9.12_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for py311-segyio-1.9.12
===> Applying FreeBSD patches for py311-segyio-1.9.12 from /usr/ports/science/py-segyio/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-segyio-1.9.12 depends on executable: cmake - not found
===> Installing existing package /packages/All/cmake-core-3.31.0_1.pkg
[main-amd64-default-job-12] Installing cmake-core-3.31.0_1...
[main-amd64-default-job-12] `-- Installing expat-2.6.3...
[main-amd64-default-job-12] `-- Extracting expat-2.6.3: .......... done
[main-amd64-default-job-12] `-- Installing jsoncpp-1.9.6_1...
[main-amd64-default-job-12] `-- Extracting jsoncpp-1.9.6_1: .......... done
[main-amd64-default-job-12] `-- Installing libidn2-2.3.7...
[main-amd64-default-job-12] | `-- Installing indexinfo-0.3.1...
[main-amd64-default-job-12] | `-- Extracting indexinfo-0.3.1: .... done
[main-amd64-default-job-12] | `-- Installing libunistring-1.2...
[main-amd64-default-job-12] | `-- Extracting libunistring-1.2: .......... done
[main-amd64-default-job-12] `-- Extracting libidn2-2.3.7: .......... done
[main-amd64-default-job-12] `-- Installing libuv-1.49.2...
[main-amd64-default-job-12] `-- Extracting libuv-1.49.2: .......... done
[main-amd64-default-job-12] `-- Installing rhash-1.4.4_1...
[main-amd64-default-job-12] | `-- Installing gettext-runtime-0.22.5...
[main-amd64-default-job-12] | `-- Extracting gettext-runtime-0.22.5: .......... done
[main-amd64-default-job-12] `-- Extracting rhash-1.4.4_1: .......... done
[main-amd64-default-job-12] Extracting cmake-core-3.31.0_1: .......... done
===> py311-segyio-1.9.12 depends on executable: cmake - found
===> Returning to build of py311-segyio-1.9.12
===> py311-segyio-1.9.12 depends on package: pybind11>0 - not found
===> Installing existing package /packages/All/pybind11-2.13.6.pkg
[main-amd64-default-job-12] Installing pybind11-2.13.6...
[main-amd64-default-job-12] Extracting pybind11-2.13.6: .......... done
===> py311-segyio-1.9.12 depends on package: pybind11>0 - found
===> Returning to build of py311-segyio-1.9.12
===> py311-segyio-1.9.12 depends on package: py311-distro>0 - not found
===> Installing existing package /packages/All/py311-distro-1.9.0.pkg
[main-amd64-default-job-12] Installing py311-distro-1.9.0...
[main-amd64-default-job-12] `-- Installing python311-3.11.10...
[main-amd64-default-job-12] | `-- Installing libffi-3.4.6...
[main-amd64-default-job-12] | `-- Extracting libffi-3.4.6: .......... done
[main-amd64-default-job-12] | `-- Installing mpdecimal-4.0.0...
[main-amd64-default-job-12] | `-- Extracting mpdecimal-4.0.0: .......... done
[main-amd64-default-job-12] | `-- Installing readline-8.2.13_2...
[main-amd64-default-job-12] | `-- Extracting readline-8.2.13_2: .......... done
[main-amd64-default-job-12] `-- Extracting python311-3.11.10: .......... done
[main-amd64-default-job-12] Extracting py311-distro-1.9.0: .......... done
=====
Message from python311-3.11.10:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py311-gdbm databases/py-gdbm@py311
py311-sqlite3 databases/py-sqlite3@py311
py311-tkinter x11-toolkits/py-tkinter@py311
===> py311-segyio-1.9.12 depends on package: py311-distro>0 - found
===> Returning to build of py311-segyio-1.9.12
===> py311-segyio-1.9.12 depends on package: py311-pip>0 - not found
===> Installing existing package /packages/All/py311-pip-23.3.2_3.pkg
[main-amd64-default-job-12] Installing py311-pip-23.3.2_3...
[main-amd64-default-job-12] `-- Installing py311-setuptools-63.1.0_1...
[main-amd64-default-job-12] `-- Extracting py311-setuptools-63.1.0_1: .......... done
[main-amd64-default-job-12] Extracting py311-pip-23.3.2_3: .......... done
=====
Message from py311-pip-23.3.2_3:
--
pip MUST ONLY be used:
* With the --user flag, OR
* To install or manage Python packages in virtual environments
Failure to follow this warning can and will result in an inconsistent
system-wide Python environment (LOCALBASE/lib/pythonX.Y/site-packages) and
cause errors.
Avoid using pip as root unless you know what you're doing.
===> py311-segyio-1.9.12 depends on package: py311-pip>0 - found
===> Returning to build of py311-segyio-1.9.12
===> py311-segyio-1.9.12 depends on package: py311-pytest-runner>=0 - not found
===> Installing existing package /packages/All/py311-pytest-runner-6.0.1.pkg
[main-amd64-default-job-12] Installing py311-pytest-runner-6.0.1...
[main-amd64-default-job-12] Extracting py311-pytest-runner-6.0.1: .......... done
=====
Message from py311-pytest-runner-6.0.1:
--
===> NOTICE:
This port is deprecated; you may wish to reconsider installing it:
pytest-runner depends on deprecated features of setuptools.
It is scheduled to be removed on or after 2024-12-31.
===> py311-segyio-1.9.12 depends on package: py311-pytest-runner>=0 - found
===> Returning to build of py311-segyio-1.9.12
===> py311-segyio-1.9.12 depends on package: py311-scikit-build>0 - not found
===> Installing existing package /packages/All/py311-scikit-build-0.18.1.pkg
[main-amd64-default-job-12] Installing py311-scikit-build-0.18.1...
[main-amd64-default-job-12] `-- Installing py311-packaging-24.2...
[main-amd64-default-job-12] `-- Extracting py311-packaging-24.2: .......... done
[main-amd64-default-job-12] `-- Installing py311-wheel-0.45.1...
[main-amd64-default-job-12] `-- Extracting py311-wheel-0.45.1: .......... done
[main-amd64-default-job-12] Extracting py311-scikit-build-0.18.1: .......... done
===> py311-segyio-1.9.12 depends on package: py311-scikit-build>0 - found
===> Returning to build of py311-segyio-1.9.12
===> py311-segyio-1.9.12 depends on package: py311-setuptools-scm>=0 - not found
===> Installing existing package /packages/All/py311-setuptools-scm-8.0.4.pkg
[main-amd64-default-job-12] Installing py311-setuptools-scm-8.0.4...
[main-amd64-default-job-12] `-- Installing py311-typing-extensions-4.12.2...
[main-amd64-default-job-12] `-- Extracting py311-typing-extensions-4.12.2: .......... done
[main-amd64-default-job-12] Extracting py311-setuptools-scm-8.0.4: .......... done
===> py311-segyio-1.9.12 depends on package: py311-setuptools-scm>=0 - found
===> Returning to build of py311-segyio-1.9.12
===> py311-segyio-1.9.12 depends on package: py311-setuptools>=63.1.0 - found
===> py311-segyio-1.9.12 depends on file: /usr/local/bin/python3.11 - found
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-segyio-1.9.12 depends on shared library: libsegyio.so - not found
===> Installing existing package /packages/All/segyio-1.9.12.pkg
[main-amd64-default-job-12] Installing segyio-1.9.12...
[main-amd64-default-job-12] Extracting segyio-1.9.12: .......... done
===> py311-segyio-1.9.12 depends on shared library: libsegyio.so - found (/usr/local/lib/libsegyio.so)
===> Returning to build of py311-segyio-1.9.12
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for py311-segyio-1.9.12
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "setup.py", line 98, in <module>
cmdclass = { 'test': setuptools.command.test.test },
^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: module 'setuptools.command' has no attribute 'test'
*** Error code 1
Stop.
make: stopped making "configure" in /usr/ports/science/py-segyio