[package - 133i386-default][science/py-arbor] Failed for py311-arbor-0.9.0 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Thu, 15 Aug 2024 08:06:03 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/beefy15/data/133i386-default/ac90984a4ba1/logs/py311-arbor-0.9.0.log
Build URL:      https://pkg-status.freebsd.org/beefy15/build.html?mastername=133i386-default&build=ac90984a4ba1
Log:

=>> Building science/py-arbor
build started at Thu Aug 15 08:05:11 UTC 2024
port directory: /usr/ports/science/py-arbor
package name: py311-arbor-0.9.0
building for: FreeBSD 133i386-default-job-11 13.3-RELEASE-p5 FreeBSD 13.3-RELEASE-p5 i386
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r--  1 root  wheel  852 Aug 13  2023 /usr/ports/science/py-arbor/Makefile
Ports top last git commit: ac90984a4ba
Ports top unclean checkout: no
Port dir last git commit: 0845e33fe1b
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-30-g79e3edcd
Host OSVERSION: 1500019
Jail OSVERSION: 1303001
Job Id: 11

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=======================<phase: check-sanity   >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
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===========================================================================
=======================<phase: pkg-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py311-arbor-0.9.0 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.21.3.pkg
[133i386-default-job-11] Installing pkg-1.21.3...
[133i386-default-job-11] Extracting pkg-1.21.3: .......... done
===>   py311-arbor-0.9.0 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py311-arbor-0.9.0
===========================================================================
=======================<phase: fetch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py311-arbor-0.9.0 for building
===========================================================================
=======================<phase: checksum       >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py311-arbor-0.9.0 for building
=> SHA256 Checksum OK for arbor-sim-arbor-v0.9.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract        >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py311-arbor-0.9.0 for building
===>  Extracting for py311-arbor-0.9.0
=> SHA256 Checksum OK for arbor-sim-arbor-v0.9.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Patching for py311-arbor-0.9.0
===>  Applying FreeBSD patches for py311-arbor-0.9.0 from /usr/ports/science/py-arbor/files
===========================================================================
=======================<phase: build-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py311-arbor-0.9.0 depends on package: pybind11>0 - not found
===>   Installing existing package /packages/All/pybind11-2.13.3.pkg
[133i386-default-job-11] Installing pybind11-2.13.3...
[133i386-default-job-11] Extracting pybind11-2.13.3: .......... done
===>   py311-arbor-0.9.0 depends on package: pybind11>0 - found
===>   Returning to build of py311-arbor-0.9.0
===>   py311-arbor-0.9.0 depends on package: nlohmann-json>0 - not found
===>   Installing existing package /packages/All/nlohmann-json-3.11.3.pkg
[133i386-default-job-11] Installing nlohmann-json-3.11.3...
[133i386-default-job-11] Extracting nlohmann-json-3.11.3: .......... done
===>   py311-arbor-0.9.0 depends on package: nlohmann-json>0 - found
===>   Returning to build of py311-arbor-0.9.0
===>   py311-arbor-0.9.0 depends on file: /usr/local/bin/cmake - not found
===>   Installing existing package /packages/All/cmake-core-3.30.2.pkg
[133i386-default-job-11] Installing cmake-core-3.30.2...
[133i386-default-job-11] `-- Installing expat-2.6.2...
[133i386-default-job-11] `-- Extracting expat-2.6.2: .......... done
[133i386-default-job-11] `-- Installing jsoncpp-1.9.5...
[133i386-default-job-11] `-- Extracting jsoncpp-1.9.5: .......... done
[133i386-default-job-11] `-- Installing libuv-1.48.0...
[133i386-default-job-11] `-- Extracting libuv-1.48.0: .......... done
[133i386-default-job-11] `-- Installing rhash-1.4.4_1...
[133i386-default-job-11] |   `-- Installing gettext-runtime-0.22.5...
[133i386-default-job-11] |   | `-- Installing indexinfo-0.3.1...
[133i386-default-job-11] |   | `-- Extracting indexinfo-0.3.1: .... done
[133i386-default-job-11] |   `-- Extracting gettext-runtime-0.22.5: .......... done
[133i386-default-job-11] `-- Extracting rhash-1.4.4_1: .......... done
[133i386-default-job-11] Extracting cmake-core-3.30.2: .......... done
===>   py311-arbor-0.9.0 depends on file: /usr/local/bin/cmake - found
===>   Returning to build of py311-arbor-0.9.0
===>   py311-arbor-0.9.0 depends on executable: ninja - not found
===>   Installing existing package /packages/All/ninja-1.11.1,4.pkg
[133i386-default-job-11] Installing ninja-1.11.1,4...
[133i386-default-job-11] `-- Installing python311-3.11.9_1...
[133i386-default-job-11] |   `-- Installing libffi-3.4.6...
[133i386-default-job-11] |   `-- Extracting libffi-3.4.6: .......... done
[133i386-default-job-11] |   `-- Installing mpdecimal-4.0.0...
[133i386-default-job-11] |   `-- Extracting mpdecimal-4.0.0: .......... done
[133i386-default-job-11] |   `-- Installing readline-8.2.10...
[133i386-default-job-11] |   `-- Extracting readline-8.2.10: .......... done
[133i386-default-job-11] `-- Extracting python311-3.11.9_1: .......... done
[133i386-default-job-11] Extracting ninja-1.11.1,4: ........ done
=====
Message from python311-3.11.9_1:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py311-gdbm       databases/py-gdbm@py311
py311-sqlite3    databases/py-sqlite3@py311
py311-tkinter    x11-toolkits/py-tkinter@py311
===>   py311-arbor-0.9.0 depends on executable: ninja - found
===>   Returning to build of py311-arbor-0.9.0
===>   py311-arbor-0.9.0 depends on file: /usr/local/bin/python3.11 - found
===========================================================================
=======================<phase: lib-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py311-arbor-0.9.0 depends on shared library: libarbor.so - not found
===>   Installing existing package /packages/All/arbor-0.10.1.pkg
[133i386-default-job-11] Installing arbor-0.10.1...
[133i386-default-job-11] `-- Installing hwloc2-2.8.0_1...
[133i386-default-job-11] |   `-- Installing level-zero-1.17.25...
[133i386-default-job-11] |   | `-- Installing libfmt-10.2.1...
[133i386-default-job-11] |   | `-- Extracting libfmt-10.2.1: .......... done
[133i386-default-job-11] |   | `-- Installing spdlog-1.14.1...
[133i386-default-job-11] |   | `-- Extracting spdlog-1.14.1: .......... done
[133i386-default-job-11] |   `-- Extracting level-zero-1.17.25: .......... done
[133i386-default-job-11] |   `-- Installing libpciaccess-0.18.1...
[133i386-default-job-11] |   `-- Extracting libpciaccess-0.18.1: ........ done
[133i386-default-job-11] |   `-- Installing libxml2-2.11.8...
[133i386-default-job-11] |   `-- Extracting libxml2-2.11.8: .......... done
[133i386-default-job-11] `-- Extracting hwloc2-2.8.0_1: .......... done
[133i386-default-job-11] `-- Installing pugixml-1.14...
[133i386-default-job-11] `-- Extracting pugixml-1.14: .......... done
[133i386-default-job-11] `-- Installing py311-svgwrite-1.4.3...
[133i386-default-job-11] |   `-- Installing py311-setuptools-63.1.0_1...
[133i386-default-job-11] |   `-- Extracting py311-setuptools-63.1.0_1: .......... done
[133i386-default-job-11] `-- Extracting py311-svgwrite-1.4.3: .......... done
[133i386-default-job-11] Extracting arbor-0.10.1: .......... done
===>   py311-arbor-0.9.0 depends on shared library: libarbor.so - found (/usr/local/lib/libarbor.so)
===>   Returning to build of py311-arbor-0.9.0
===========================================================================
=======================<phase: configure      >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Configuring for py311-arbor-0.9.0
===>  Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/py-arbor/work-py311/.build
CMake Warning (dev) in CMakeLists.txt:
  No project() command is present.  The top-level CMakeLists.txt file must
  contain a literal, direct call to the project() command.  Add a line of
  code such as

    project(ProjectName)

  near the top of the file, but after cmake_minimum_required().

  CMake is pretending there is a "project(Project)" command on the first
  line.
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) in CMakeLists.txt:
  cmake_minimum_required() should be called prior to this top-level project()
  call.  Please see the cmake-commands(7) manual for usage documentation of
  both commands.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- The C compiler identification is Clang 17.0.6
-- The CXX compiler identification is Clang 17.0.6
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python3: /usr/local/bin/python3.11 (found version "3.11.9") found components: Interpreter Development Development.Module Development.Embed
CMake Warning at /usr/local/share/cmake/pybind11/pybind11Common.cmake:189 (message):
  USE -DCMAKE_CXX_STANDARD=17 instead of PYBIND11_CPP_STANDARD
Call Stack (most recent call first):
  /usr/local/share/cmake/pybind11/pybind11Config.cmake:250 (include)
  CMakeLists.txt:25 (find_package)


-- Performing Test HAS_FLTO_THIN
-- Performing Test HAS_FLTO_THIN - Success
-- Found pybind11: /usr/local/include (found version "2.13.3")
-- Python module installation path: /usr/local/lib/python3.11/site-packages
-- Configuring done (2.2s)
-- Generating done (0.0s)
CMake Warning:
  Manually-specified variables were not used by the project:

    BOOST_PYTHON_SUFFIX
    CMAKE_COLOR_MAKEFILE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_SHARED_LINKER_FLAGS
    CMAKE_VERBOSE_MAKEFILE
    FETCHCONTENT_FULLY_DISCONNECTED
    Python_ADDITIONAL_VERSIONS
    Python_EXECUTABLE
    THREADS_HAVE_PTHREAD_ARG


-- Build files have been written to: /wrkdirs/usr/ports/science/py-arbor/work-py311/.build
===========================================================================
=======================<phase: build          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Building for py311-arbor-0.9.0
[  5% 3/20] /usr/bin/c++  -isystem /usr/local/include/python3.11 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -fPIC -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -fPIC -isystem /usr/local/include  -DNDEBUG -std=gnu++17 -fvisibility=hidden -MD -MT CMakeFiles/pyarb_obj.dir/cells.cpp.o -MF CMakeFiles/pyarb_obj.dir/cells.cpp.o.d -o CMakeFiles/pyarb_obj.dir/cells.cpp.o -c /wrkdirs/usr/ports/science/py-arbor/work-py311/arbor-0.9.0/python/cells.cpp
FAILED: CMakeFiles/pyarb_obj.dir/cells.cpp.o 
/usr/bin/c++  -isystem /usr/local/include/python3.11 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -fPIC -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -fPIC -isystem /usr/local/include  -DNDEBUG -std=gnu++17 -fvisibility=hidden -MD -MT CMakeFiles/pyarb_obj.dir/cells.cpp.o -MF CMakeFiles/pyarb_obj.dir/cells.cpp.o.d -o CMakeFiles/pyarb_obj.dir/cells.cpp.o -c /wrkdirs/usr/ports/science/py-arbor/work-py311/arbor-0.9.0/python/cells.cpp
In file included from /wrkdirs/usr/ports/science/py-arbor/work-py311/arbor-0.9.0/python/cells.cpp:17:
In file included from /usr/local/include/arbor/benchmark_cell.hpp:4:
In file included from /usr/local/include/arbor/schedule.hpp:15:
/usr/local/include/arbor/units.hpp:3:10: fatal error: 'units/units.hpp' file not found
    3 | #include <units/units.hpp>
      |          ^~~~~~~~~~~~~~~~~
1 error generated.
[ 10% 3/20] /usr/bin/c++  -isystem /usr/local/include/python3.11 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -fPIC -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -fPIC -isystem /usr/local/include  -DNDEBUG -std=gnu++17 -fvisibility=hidden -MD -MT CMakeFiles/pyarb_obj.dir/cable_cell_io.cpp.o -MF CMakeFiles/pyarb_obj.dir/cable_cell_io.cpp.o.d -o CMakeFiles/pyarb_obj.dir/cable_cell_io.cpp.o -c /wrkdirs/usr/ports/science/py-arbor/work-py311/arbor-0.9.0/python/cable_cell_io.cpp
FAILED: CMakeFiles/pyarb_obj.dir/cable_cell_io.cpp.o 
/usr/bin/c++  -isystem /usr/local/include/python3.11 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -fPIC -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -fPIC -isystem /usr/local/include  -DNDEBUG -std=gnu++17 -fvisibility=hidden -MD -MT CMakeFiles/pyarb_obj.dir/cable_cell_io.cpp.o -MF CMakeFiles/pyarb_obj.dir/cable_cell_io.cpp.o.d -o CMakeFiles/pyarb_obj.dir/cable_cell_io.cpp.o -c /wrkdirs/usr/ports/science/py-arbor/work-py311/arbor-0.9.0/python/cable_cell_io.cpp
In file included from /wrkdirs/usr/ports/science/py-arbor/work-py311/arbor-0.9.0/python/cable_cell_io.cpp:9:
In file included from /usr/local/include/arbor/cable_cell.hpp:11:
In file included from /usr/local/include/arbor/cable_cell_param.hpp:16:
/usr/local/include/arbor/units.hpp:3:10: fatal error: 'units/units.hpp' file not found
    3 | #include <units/units.hpp>
      |          ^~~~~~~~~~~~~~~~~
1 error generated.
[ 15% 3/20] /usr/bin/c++  -isystem /usr/local/include/python3.11 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -fPIC -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -fPIC -isystem /usr/local/include  -DNDEBUG -std=gnu++17 -fvisibility=hidden -MD -MT CMakeFiles/pyarb_obj.dir/probes.cpp.o -MF CMakeFiles/pyarb_obj.dir/probes.cpp.o.d -o CMakeFiles/pyarb_obj.dir/probes.cpp.o -c /wrkdirs/usr/ports/science/py-arbor/work-py311/arbor-0.9.0/python/probes.cpp
FAILED: CMakeFiles/pyarb_obj.dir/probes.cpp.o 
/usr/bin/c++  -isystem /usr/local/include/python3.11 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -fPIC -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -fPIC -isystem /usr/local/include  -DNDEBUG -std=gnu++17 -fvisibility=hidden -MD -MT CMakeFiles/pyarb_obj.dir/probes.cpp.o -MF CMakeFiles/pyarb_obj.dir/probes.cpp.o.d -o CMakeFiles/pyarb_obj.dir/probes.cpp.o -c /wrkdirs/usr/ports/science/py-arbor/work-py311/arbor-0.9.0/python/probes.cpp
In file included from /wrkdirs/usr/ports/science/py-arbor/work-py311/arbor-0.9.0/python/probes.cpp:10:
In file included from /usr/local/include/arbor/cable_cell.hpp:11:
In file included from /usr/local/include/arbor/cable_cell_param.hpp:16:
/usr/local/include/arbor/units.hpp:3:10: fatal error: 'units/units.hpp' file not found
    3 | #include <units/units.hpp>
      |          ^~~~~~~~~~~~~~~~~
1 error generated.
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1

Stop.
make: stopped in /usr/ports/science/py-arbor