[package - 133i386-default][databases/py-tiledb] Failed for py311-tiledb-0.31.1 in build
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Date: Tue, 06 Aug 2024 22:41:48 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy15/data/133i386-default/46b3743b8469/logs/py311-tiledb-0.31.1.log
Build URL: https://pkg-status.freebsd.org/beefy15/build.html?mastername=133i386-default&build=46b3743b8469
Log:
=>> Building databases/py-tiledb
build started at Tue Aug 6 22:37:52 UTC 2024
port directory: /usr/ports/databases/py-tiledb
package name: py311-tiledb-0.31.1
building for: FreeBSD 133i386-default-job-12 13.3-RELEASE-p4 FreeBSD 13.3-RELEASE-p4 i386
maintained by: sunpoet@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1244 Aug 6 01:01 /usr/ports/databases/py-tiledb/Makefile
Ports top last git commit: 46b3743b846
Ports top unclean checkout: no
Port dir last git commit: 7d92511cb3d
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-30-g79e3edcd
Host OSVERSION: 1500019
Jail OSVERSION: 1303001
Job Id: 12
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PORT_FLAGS=
PKGENV=
FLAVOR=py311
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sunpoet@FreeBSD.org
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--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py311/.cache HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/databases/py-tiledb/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/databases/py-tiledb/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
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TILEDB_PATH=/usr/local XDG_DATA_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py311/.cache HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/databases/py-tiledb/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/databases/py-tiledb/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/includ
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PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=13.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py311-tiledb" EXAMPLESDIR="share/examples/py311-tiledb" DATADIR="share/py311-tiledb" WWWDIR="www/py311-tiledb" ETCDIR="etc/py311-tiledb"
--End PLIST_SUB--
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PACKAGES=/packages
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PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
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ARCH=${MACHINE_ARCH}
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
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UID=0
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socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-tiledb-0.31.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[133i386-default-job-12] Installing pkg-1.21.3...
[133i386-default-job-12] Extracting pkg-1.21.3: .......... done
===> py311-tiledb-0.31.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py311-tiledb-0.31.1
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
=> tiledb-0.31.1.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://files.pythonhosted.org/packages/source/t/tiledb/tiledb-0.31.1.tar.gz
tiledb-0.31.1.tar.gz 357 kB 2271 kBps 00s
===> Fetching all distfiles required by py311-tiledb-0.31.1 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by py311-tiledb-0.31.1 for building
=> SHA256 Checksum OK for tiledb-0.31.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by py311-tiledb-0.31.1 for building
===> Extracting for py311-tiledb-0.31.1
=> SHA256 Checksum OK for tiledb-0.31.1.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for py311-tiledb-0.31.1
===> Applying FreeBSD patches for py311-tiledb-0.31.1 from /usr/ports/databases/py-tiledb/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-tiledb-0.31.1 depends on package: py311-numpy>=1.25,1 - not found
===> Installing existing package /packages/All/py311-numpy-1.26.4_1,1.pkg
[133i386-default-job-12] Installing py311-numpy-1.26.4_1,1...
[133i386-default-job-12] `-- Installing gcc13-13.2.0_4...
[133i386-default-job-12] | `-- Installing binutils-2.40_6,1...
[133i386-default-job-12] | | `-- Installing gettext-runtime-0.22.5...
[133i386-default-job-12] | | `-- Installing indexinfo-0.3.1...
[133i386-default-job-12] | | `-- Extracting indexinfo-0.3.1: .... done
[133i386-default-job-12] | | `-- Extracting gettext-runtime-0.22.5: .......... done
[133i386-default-job-12] | | `-- Installing zstd-1.5.6...
[133i386-default-job-12] | | `-- Installing liblz4-1.10.0,1...
[133i386-default-job-12] | | `-- Extracting liblz4-1.10.0,1: .......... done
[133i386-default-job-12] | | `-- Extracting zstd-1.5.6: .......... done
[133i386-default-job-12] | `-- Extracting binutils-2.40_6,1: .......... done
[133i386-default-job-12] | `-- Installing gmp-6.3.0...
[133i386-default-job-12] | `-- Extracting gmp-6.3.0: .......... done
[133i386-default-job-12] | `-- Installing mpc-1.3.1_1...
[133i386-default-job-12] | | `-- Installing mpfr-4.2.1,1...
<snip>
===> py311-tiledb-0.31.1 depends on package: py311-numpy>=1.25,1 - found
===> Returning to build of py311-tiledb-0.31.1
===> py311-tiledb-0.31.1 depends on package: py311-pybind11>=0 - not found
===> Installing existing package /packages/All/py311-pybind11-2.13.1.pkg
[133i386-default-job-12] Installing py311-pybind11-2.13.1...
[133i386-default-job-12] Extracting py311-pybind11-2.13.1: .......... done
===> py311-tiledb-0.31.1 depends on package: py311-pybind11>=0 - found
===> Returning to build of py311-tiledb-0.31.1
===> py311-tiledb-0.31.1 depends on package: py311-scikit-build-core>=0 - not found
===> Installing existing package /packages/All/py311-scikit-build-core-0.9.9.pkg
[133i386-default-job-12] Installing py311-scikit-build-core-0.9.9...
[133i386-default-job-12] `-- Installing py311-packaging-24.1...
[133i386-default-job-12] `-- Extracting py311-packaging-24.1: .......... done
[133i386-default-job-12] `-- Installing py311-pathspec-0.12.1...
[133i386-default-job-12] `-- Extracting py311-pathspec-0.12.1: .......... done
[133i386-default-job-12] Extracting py311-scikit-build-core-0.9.9: .......... done
===> py311-tiledb-0.31.1 depends on package: py311-scikit-build-core>=0 - found
===> Returning to build of py311-tiledb-0.31.1
===> py311-tiledb-0.31.1 depends on package: py311-setuptools-scm>=1.5.4 - not found
===> Installing existing package /packages/All/py311-setuptools-scm-8.0.4.pkg
[133i386-default-job-12] Installing py311-setuptools-scm-8.0.4...
[133i386-default-job-12] `-- Installing py311-typing-extensions-4.12.2...
[133i386-default-job-12] `-- Extracting py311-typing-extensions-4.12.2: .......... done
[133i386-default-job-12] Extracting py311-setuptools-scm-8.0.4: .......... done
===> py311-tiledb-0.31.1 depends on package: py311-setuptools-scm>=1.5.4 - found
===> Returning to build of py311-tiledb-0.31.1
===> py311-tiledb-0.31.1 depends on package: tiledb>=2.25.0 - not found
===> Installing existing package /packages/All/tiledb-2.25.0_1.pkg
[133i386-default-job-12] Installing tiledb-2.25.0_1...
[133i386-default-job-12] `-- Installing capnproto1-1.0.1...
[133i386-default-job-12] `-- Extracting capnproto1-1.0.1: .......... done
[133i386-default-job-12] `-- Installing catch2-3.6.0...
[133i386-default-job-12] `-- Extracting catch2-3.6.0: .......... done
[133i386-default-job-12] `-- Installing clipp-1.2.3_1...
[133i386-default-job-12] `-- Extracting clipp-1.2.3_1: .... done
[133i386-default-job-12] `-- Installing curl-8.9.1...
[133i386-default-job-12] | `-- Installing libnghttp2-1.62.1...
[133i386-default-job-12] | `-- Extracting libnghttp2-1.62.1: .......... done
[133i386-default-job-12] | `-- Installing libpsl-0.21.5_1...
[133i386-default-job-12] | | `-- Installing libidn2-2.3.7...
[133i386-default-job-12] | | `-- Installing libunistring-1.2...
[133i386-default-job-12] | | `-- Extracting libunistring-1.2: .......... done
[133i386-default-job-12] | | `-- Extracting libidn2-2.3.7: .......... done
[133i386-default-job-12] | `-- Extracting libpsl-0.21.5_1: .......... done
[133i386-default-job-12] | `-- Installing libssh2-1.11.0_1,3...
[133i386-default-job-12] | `-- Extracting libssh2-1.11.0_1,3: .......... done
[133i386-default-job-12] `-- Extracting curl-8.9.1: .......... done
[133i386-default-job-12] `-- Installing libfmt-10.2.1...
[133i386-default-job-12] `-- Extracting libfmt-10.2.1: .......... done
[133i386-default-job-12] `-- Installing spdlog-1.14.1...
[133i386-default-job-12] `-- Extracting spdlog-1.14.1: .......... done
[133i386-default-job-12] Extracting tiledb-2.25.0_1: .......... done
===> py311-tiledb-0.31.1 depends on package: tiledb>=2.25.0 - found
===> Returning to build of py311-tiledb-0.31.1
===> py311-tiledb-0.31.1 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.29.6.pkg
[133i386-default-job-12] Installing cmake-core-3.29.6...
[133i386-default-job-12] `-- Installing expat-2.6.2...
[133i386-default-job-12] `-- Extracting expat-2.6.2: .......... done
[133i386-default-job-12] `-- Installing jsoncpp-1.9.5...
[133i386-default-job-12] `-- Extracting jsoncpp-1.9.5: .......... done
[133i386-default-job-12] `-- Installing libuv-1.48.0...
[133i386-default-job-12] `-- Extracting libuv-1.48.0: .......... done
[133i386-default-job-12] `-- Installing rhash-1.4.4_1...
[133i386-default-job-12] `-- Extracting rhash-1.4.4_1: .......... done
[133i386-default-job-12] Extracting cmake-core-3.29.6: .......... done
===> py311-tiledb-0.31.1 depends on file: /usr/local/bin/cmake - found
===> Returning to build of py311-tiledb-0.31.1
===> py311-tiledb-0.31.1 depends on executable: cython-3.11 - not found
===> Installing existing package /packages/All/py311-cython-0.29.37_1.pkg
[133i386-default-job-12] Installing py311-cython-0.29.37_1...
[133i386-default-job-12] Extracting py311-cython-0.29.37_1: .......... done
===> py311-tiledb-0.31.1 depends on executable: cython-3.11 - found
===> Returning to build of py311-tiledb-0.31.1
===> py311-tiledb-0.31.1 depends on file: /usr/local/bin/python3.11 - found
===> py311-tiledb-0.31.1 depends on package: py311-build>=0 - not found
===> Installing existing package /packages/All/py311-build-1.2.1.pkg
[133i386-default-job-12] Installing py311-build-1.2.1...
[133i386-default-job-12] `-- Installing py311-pyproject_hooks-1.1.0...
[133i386-default-job-12] `-- Extracting py311-pyproject_hooks-1.1.0: .......... done
[133i386-default-job-12] Extracting py311-build-1.2.1: .......... done
===> py311-tiledb-0.31.1 depends on package: py311-build>=0 - found
===> Returning to build of py311-tiledb-0.31.1
===> py311-tiledb-0.31.1 depends on package: py311-installer>=0 - not found
===> Installing existing package /packages/All/py311-installer-0.7.0.pkg
[133i386-default-job-12] Installing py311-installer-0.7.0...
[133i386-default-job-12] Extracting py311-installer-0.7.0: .......... done
===> py311-tiledb-0.31.1 depends on package: py311-installer>=0 - found
===> Returning to build of py311-tiledb-0.31.1
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-tiledb-0.31.1 depends on shared library: libtiledb.so - found (/usr/local/lib/libtiledb.so)
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for py311-tiledb-0.31.1
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for py311-tiledb-0.31.1
* Getting build dependencies for wheel...
* Building wheel...
*** scikit-build-core 0.9.9 using CMake 3.29.6 (wheel)
*** Configuring CMake...
loading initial cache file /tmp/tmp2q3skppa/build/CMakeInit.txt
-- The C compiler identification is Clang 17.0.6
-- The CXX compiler identification is Clang 17.0.6
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python: /usr/local/bin/python3.11 (found version "3.11.9") found components: Interpreter Development.Module NumPy
-- Performing Test HAS_FLTO_THIN
-- Performing Test HAS_FLTO_THIN - Failed
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Found pybind11: /usr/local/lib/python3.11/site-packages/pybind11/include (found version "2.13.1")
-- Found external TileDB core library
-- Using libtiledb path: /usr/local/lib/cmake/TileDB
-- Setting RPATH for targets "main" and "libtiledb" to /usr/local/lib
-- Setting RPATH for target "cc" to /usr/local/lib
-- Configuring done (2.5s)
-- Generating done (0.0s)
-- Build files have been written to: /tmp/tmp2q3skppa/build
*** Building project with Unix Makefiles...
[ 3%] Generating libtiledb.cc
/usr/local/lib/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /wrkdirs/usr/ports/databases/py-tiledb/work-py311/tiledb-0.31.1/tiledb/libtiledb.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
[ 6%] Building CXX object tiledb/CMakeFiles/libtiledb.dir/libtiledb.cc.o
In file included from /tmp/tmp2q3skppa/build/tiledb/libtiledb.cc:761:
In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5:
In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929:
/usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^
/tmp/tmp2q3skppa/build/tiledb/libtiledb.cc:102731:34: warning: increment of object of volatile-qualified type '__pyx_atomic_int' (aka 'volatile int') is deprecated [-Wdeprecated-volatile]
102731 | result = (*acquisition_count)++;
| ^
/tmp/tmp2q3skppa/build/tiledb/libtiledb.cc:102741:34: warning: decrement of object of volatile-qualified type '__pyx_atomic_int' (aka 'volatile int') is deprecated [-Wdeprecated-volatile]
102741 | result = (*acquisition_count)--;
| ^
3 warnings generated.
[ 9%] Linking CXX shared module libtiledb.cpython-311.so
[ 9%] Built target libtiledb
[ 12%] Building CXX object tiledb/CMakeFiles/main.dir/main.cc.o
[ 15%] Building CXX object tiledb/CMakeFiles/main.dir/core.cc.o
[ 18%] Building CXX object tiledb/CMakeFiles/main.dir/npbuffer.cc.o
[ 21%] Building CXX object tiledb/CMakeFiles/main.dir/fragment.cc.o
[ 24%] Building CXX object tiledb/CMakeFiles/main.dir/schema_evolution.cc.o
[ 27%] Building CXX object tiledb/CMakeFiles/main.dir/util.cc.o
[ 30%] Building CXX object tiledb/CMakeFiles/main.dir/serialization.cc.o
[ 33%] Building CXX object tiledb/CMakeFiles/main.dir/tests/test_metadata.cc.o
[ 36%] Building CXX object tiledb/CMakeFiles/main.dir/tests/test_webp.cc.o
[ 39%] Building CXX object tiledb/CMakeFiles/main.dir/tests/test_serialization.cc.o
In file included from /wrkdirs/usr/ports/databases/py-tiledb/work-py311/tiledb-0.31.1/tiledb/tests/test_serialization.cc:2:
In file included from /usr/local/lib/python3.11/site-packages/pybind11/include/pybind11/numpy.h:12:
In file included from /usr/local/lib/python3.11/site-packages/pybind11/include/pybind11/pybind11.h:13:
In file included from /usr/local/lib/python3.11/site-packages/pybind11/include/pybind11/detail/class.h:12:
In file included from /usr/local/lib/python3.11/site-packages/pybind11/include/pybind11/detail/../attr.h:13:
/usr/local/lib/python3.11/site-packages/pybind11/include/pybind11/detail/../detail/common.h:494:19: error: static assertion failed due to requirement 'sizeof(unsigned long long) <= sizeof(int)': Implicit narrowing is not permitted.
494 | static_assert(sizeof(IntType) <= sizeof(ssize_t), "Implicit narrowing is not permitted.");
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/lib/python3.11/site-packages/pybind11/include/pybind11/detail/../detail/../pytypes.h:1676:57: note: in instantiation of function template specialization 'pybind11::ssize_t_cast<unsigned long long>' requested here
1676 | : object(PYBIND11_BYTES_FROM_STRING_AND_SIZE(c, ssize_t_cast(n)), stolen_t{}) {
| ^
/wrkdirs/usr/ports/databases/py-tiledb/work-py311/tiledb-0.31.1/tiledb/tests/test_serialization.cc:78:15: note: in instantiation of function template specialization 'pybind11::bytes::bytes<unsigned long long, 0>' requested here
78 | py::bytes output((char *)buff_data, buff_num_bytes);
| ^
/usr/local/lib/python3.11/site-packages/pybind11/include/pybind11/detail/../detail/common.h:494:35: note: expression evaluates to '8 <= 4'
494 | static_assert(sizeof(IntType) <= sizeof(ssize_t), "Implicit narrowing is not permitted.");
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
1 error generated.
*** Error code 1
Stop.
make[2]: stopped in /tmp/tmp2q3skppa/build
*** Error code 1
Stop.
make[1]: stopped in /tmp/tmp2q3skppa/build
*** Error code 1
Stop.
make: stopped in /tmp/tmp2q3skppa/build
*** CMake build failed
ERROR Backend subprocess exited when trying to invoke build_wheel
*** Error code 1
Stop.
make: stopped in /usr/ports/databases/py-tiledb