[package - main-armv7-default][science/py-scipy] Failed for py39-scipy-1.11.1_2 in configure/runaway
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Date: Fri, 26 Apr 2024 15:51:08 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: python@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/p1c7a816cd0ad_s1bd4f769ca/logs/py39-scipy-1.11.1_2.log
Build URL: https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=p1c7a816cd0ad_s1bd4f769ca
Log:
=>> Building science/py-scipy
build started at Fri Apr 26 13:38:52 UTC 2024
port directory: /usr/ports/science/py-scipy
package name: py39-scipy-1.11.1_2
building for: FreeBSD main-armv7-default-job-06 15.0-CURRENT FreeBSD 15.0-CURRENT 1500018 arm
maintained by: python@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 2054 Jan 6 01:02 /usr/ports/science/py-scipy/Makefile
Ports top last git commit: 1c7a816cd0a
Ports top unclean checkout: no
Port dir last git commit: f2489ab0c72
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-30-g79e3edcd
Host OSVERSION: 1500006
Jail OSVERSION: 1500018
Job Id: 06
!!! Jail is newer than host. (Jail: 1500018, Host: 1500006) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
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UNAME_v=FreeBSD 15.0-CURRENT 1500018
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MAKE_OBJDIR_CHECK_WRITABLE=0
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SAVED_TERM=
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OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.1-30-g79e3edcd
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=py39
MAKE_ARGS= FLAVOR=py39
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for py39-scipy-1.11.1_2:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
python@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scipy/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scipy/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scipy/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scipy/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/l
ocal/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -shared -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTDOCS="" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py39-scipy" EXAMPLESDIR="share/examples/py39-scipy" DATADIR="share/py39-scipy" WWWDIR="www/py39-scipy" ETCDIR="etc/py39-scipy"
--End PLIST_SUB--
--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py39-scipy DOCSDIR=/usr/local/share/doc/py39-scipy EXAMPLESDIR=/usr/local/share/examples/py39-scipy WWWDIR=/usr/local/www/py39-scipy ETCDIR=/usr/local/etc/py39-scipy
--End SUB_LIST--
---Begin make.conf---
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py39-scipy-1.11.1_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.2.pkg
[main-armv7-default-job-06] Installing pkg-1.21.2...
[main-armv7-default-job-06] Extracting pkg-1.21.2: .......... done
===> py39-scipy-1.11.1_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py39-scipy-1.11.1_2
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-scipy-1.11.1_2 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-scipy-1.11.1_2 for building
=> SHA256 Checksum OK for scipy-1.11.1.tar.gz.
=> SHA256 Checksum OK for scipy-html-1.11.1.zip.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-scipy-1.11.1_2 for building
===> Extracting for py39-scipy-1.11.1_2
=> SHA256 Checksum OK for scipy-1.11.1.tar.gz.
=> SHA256 Checksum OK for scipy-html-1.11.1.zip.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for py39-scipy-1.11.1_2
===> Applying FreeBSD patches for py39-scipy-1.11.1_2 from /usr/ports/science/py-scipy/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py39-scipy-1.11.1_2 depends on package: py39-numpy>=1.16,1<1.26,1 - not found
===> Installing existing package /packages/All/py39-numpy-1.25.0_6,1.pkg
[main-armv7-default-job-06] Installing py39-numpy-1.25.0_6,1...
[main-armv7-default-job-06] `-- Installing gcc13-13.2.0_4...
[main-armv7-default-job-06] | `-- Installing binutils-2.40_5,1...
[main-armv7-default-job-06] | | `-- Installing gettext-runtime-0.22.5...
[main-armv7-default-job-06] | | `-- Installing indexinfo-0.3.1...
[main-armv7-default-job-06] | | `-- Extracting indexinfo-0.3.1: .... done
[main-armv7-default-job-06] | | `-- Extracting gettext-runtime-0.22.5: .......... done
[main-armv7-default-job-06] | | `-- Installing zstd-1.5.6...
[main-armv7-default-job-06] | | `-- Installing liblz4-1.9.4_1,1...
[main-armv7-default-job-06] | | `-- Extracting liblz4-1.9.4_1,1: .......... done
[main-armv7-default-job-06] | | `-- Extracting zstd-1.5.6: .......... done
[main-armv7-default-job-06] | `-- Extracting binutils-2.40_5,1: .......... done
[main-armv7-default-job-06] | `-- Installing gmp-6.3.0...
[main-armv7-default-job-06] | `-- Extracting gmp-6.3.0: .......... done
[main-armv7-default-job-06] | `-- Installing mpc-1.3.1_1...
[main-armv7-default-job-06] | | `-- Installing mpfr-4.2.1,1...
[main-armv7-default-job-06] | | `-- Extracting mpfr-4.2.1,1: .......... done
[main-armv7-default-job-06] | `-- Extracting mpc-1.3.1_1: ......... done
[main-armv7-default-job-06] `-- Extracting gcc13-13.2.0_4: .......... done
[main-armv7-default-job-06] `-- Installing openblas-0.3.25,2...
[main-armv7-default-job-06] `-- Extracting openblas-0.3.25,2: .......... done
[main-armv7-default-job-06] `-- Installing py39-setuptools-63.1.0_1...
[main-armv7-default-job-06] | `-- Installing python39-3.9.18_2...
[main-armv7-default-job-06] | | `-- Installing libffi-3.4.4_1...
[main-armv7-default-job-06] | | `-- Extracting libffi-3.4.4_1: .......... done
[main-armv7-default-job-06] | | `-- Installing mpdecimal-4.0.0...
[main-armv7-default-job-06] | | `-- Extracting mpdecimal-4.0.0: .......... done
[main-armv7-default-job-06] | | `-- Installing readline-8.2.10...
[main-armv7-default-job-06] | | `-- Extracting readline-8.2.10: .......... done
[main-armv7-default-job-06] | `-- Extracting python39-3.9.18_2: .......... done
[main-armv7-default-job-06] `-- Extracting py39-setuptools-63.1.0_1: .......... done
[main-armv7-default-job-06] `-- Installing suitesparse-umfpack-6.3.2...
[main-armv7-default-job-06] | `-- Installing suitesparse-amd-3.3.1...
[main-armv7-default-job-06] | | `-- Installing suitesparse-config-7.6.1...
[main-armv7-default-job-06] | | `-- Extracting suitesparse-config-7.6.1: .......... done
[main-armv7-default-job-06] | `-- Extracting suitesparse-amd-3.3.1: .......... done
[main-armv7-default-job-06] | `-- Installing suitesparse-camd-3.3.1...
[main-armv7-default-job-06] | `-- Extracting suitesparse-camd-3.3.1: .......... done
[main-armv7-default-job-06] | `-- Installing suitesparse-ccolamd-3.3.2...
[main-armv7-default-job-06] | `-- Extracting suitesparse-ccolamd-3.3.2: .......... done
[main-armv7-default-job-06] | `-- Installing suitesparse-cholmod-5.2.0...
[main-armv7-default-job-06] | | `-- Installing suitesparse-colamd-3.3.2...
[main-armv7-default-job-06] | | `-- Extracting suitesparse-colamd-3.3.2: .......... done
[main-armv7-default-job-06] | `-- Extracting suitesparse-cholmod-5.2.0: .......... done
[main-armv7-default-job-06] `-- Extracting suitesparse-umfpack-6.3.2: .......... done
[main-armv7-default-job-06] Extracting py39-numpy-1.25.0_6,1: .......... done
=====
Message from gcc13-13.2.0_4:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc13
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python39-3.9.18_2:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py39-gdbm databases/py-gdbm@py39
py39-sqlite3 databases/py-sqlite3@py39
py39-tkinter x11-toolkits/py-tkinter@py39
===> py39-scipy-1.11.1_2 depends on package: py39-numpy>=1.16,1<1.26,1 - found
===> Returning to build of py39-scipy-1.11.1_2
===> py39-scipy-1.11.1_2 depends on package: py39-pip>0 - not found
===> Installing existing package /packages/All/py39-pip-23.3.2_1.pkg
[main-armv7-default-job-06] Installing py39-pip-23.3.2_1...
[main-armv7-default-job-06] Extracting py39-pip-23.3.2_1: .......... done
=====
Message from py39-pip-23.3.2_1:
--
pip MUST ONLY be used:
* With the --user flag, OR
* To install or manage Python packages in virtual environments
Failure to follow this warning can and will result in an inconsistent
system-wide Python environment (LOCALBASE/lib/pythonX.Y/site-packages) and
cause errors.
Avoid using pip as root unless you know what you're doing.
===> py39-scipy-1.11.1_2 depends on package: py39-pip>0 - found
===> Returning to build of py39-scipy-1.11.1_2
===> py39-scipy-1.11.1_2 depends on package: py39-pybind11>0 - not found
===> Installing existing package /packages/All/py39-pybind11-2.12.0.pkg
[main-armv7-default-job-06] Installing py39-pybind11-2.12.0...
[main-armv7-default-job-06] Extracting py39-pybind11-2.12.0: .......... done
===> py39-scipy-1.11.1_2 depends on package: py39-pybind11>0 - found
===> Returning to build of py39-scipy-1.11.1_2
===> py39-scipy-1.11.1_2 depends on package: py39-pythran>=0 - not found
===> Installing existing package /packages/All/py39-pythran-0.15.0.pkg
[main-armv7-default-job-06] Installing py39-pythran-0.15.0...
[main-armv7-default-job-06] `-- Installing py39-beniget-0.4.1_1...
[main-armv7-default-job-06] | `-- Installing py39-gast-0.5.4_1...
[main-armv7-default-job-06] | `-- Extracting py39-gast-0.5.4_1: .......... done
[main-armv7-default-job-06] `-- Extracting py39-beniget-0.4.1_1: .......... done
[main-armv7-default-job-06] `-- Installing py39-ply-3.11...
[main-armv7-default-job-06] `-- Extracting py39-ply-3.11: .......... done
[main-armv7-default-job-06] Extracting py39-pythran-0.15.0: .......... done
===> py39-scipy-1.11.1_2 depends on package: py39-pythran>=0 - found
===> Returning to build of py39-scipy-1.11.1_2
===> py39-scipy-1.11.1_2 depends on package: unzip>0 - not found
===> Installing existing package /packages/All/unzip-6.0_8.pkg
[main-armv7-default-job-06] Installing unzip-6.0_8...
[main-armv7-default-job-06] Extracting unzip-6.0_8: .......... done
===> py39-scipy-1.11.1_2 depends on package: unzip>0 - found
===> Returning to build of py39-scipy-1.11.1_2
===> py39-scipy-1.11.1_2 depends on executable: gfortran13 - found
===> py39-scipy-1.11.1_2 depends on executable: cython-3.9 - not found
===> Installing existing package /packages/All/py39-cython-0.29.37.pkg
[main-armv7-default-job-06] Installing py39-cython-0.29.37...
[main-armv7-default-job-06] Extracting py39-cython-0.29.37: .......... done
===> py39-scipy-1.11.1_2 depends on executable: cython-3.9 - found
===> Returning to build of py39-scipy-1.11.1_2
===> py39-scipy-1.11.1_2 depends on package: py39-setuptools>=63.1.0 - found
===> py39-scipy-1.11.1_2 depends on file: /usr/local/bin/python3.9 - found
===> py39-scipy-1.11.1_2 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py39-scipy-1.11.1_2 depends on shared library: libblas.so - not found
===> Installing existing package /packages/All/blas-3.12.0_1.pkg
[main-armv7-default-job-06] Installing blas-3.12.0_1...
[main-armv7-default-job-06] Extracting blas-3.12.0_1: ........ done
===> py39-scipy-1.11.1_2 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so)
===> Returning to build of py39-scipy-1.11.1_2
===> py39-scipy-1.11.1_2 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for py39-scipy-1.11.1_2
setup.py:390: UserWarning: Unrecognized setuptools command ('config --fcompiler=gnu95'), proceeding with generating Cython sources and expanding templates
warnings.warn("Unrecognized setuptools command ('{}'), proceeding with "
=>> Killing runaway build after 7200 seconds with no output