[package - 132amd64-default][science/cdo] Failed for cdo-2.4.0_1 in build
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Date: Sat, 20 Apr 2024 15:01:23 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy16/data/132amd64-default/1c7a816cd0ad/logs/cdo-2.4.0_1.log
Build URL: https://pkg-status.freebsd.org/beefy16/build.html?mastername=132amd64-default&build=1c7a816cd0ad
Log:
=>> Building science/cdo
build started at Sat Apr 20 14:56:10 UTC 2024
port directory: /usr/ports/science/cdo
package name: cdo-2.4.0_1
building for: FreeBSD 132amd64-default-job-09 13.2-RELEASE-p11 FreeBSD 13.2-RELEASE-p11 amd64
maintained by: sunpoet@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 2473 Apr 16 01:04 /usr/ports/science/cdo/Makefile
Ports top last git commit: 1c7a816cd0a
Ports top unclean checkout: no
Port dir last git commit: e3ecaf6c0a8
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-30-g79e3edcd
Host OSVERSION: 1500006
Jail OSVERSION: 1302001
Job Id: 09
---Begin Environment---
SHELL=/bin/csh
OSVERSION=1302001
UNAME_v=FreeBSD 13.2-RELEASE-p11
UNAME_r=13.2-RELEASE-p11
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STATUS=1
HOME=/root
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MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.1-30-g79e3edcd
MASTERMNT=/usr/local/poudriere/data/.m/132amd64-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
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PWD=/usr/local/poudriere/data/.m/132amd64-default/09/.p
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SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for cdo-2.4.0_1:
CGRIBEX=on: Use CGRIBEX library for GRIB1 files
ECCODES=on: Use ecCodes for GRIB files
HDF5=on: HDF-5 data format support
JASPER=on: JPEG 2000 support via JasPer
NETCDF=on: NetCDF data format support
PROJ=on: PROJ.4 cartographic projections support
SZIP=on: Szip compression support
UDUNITS=on: Unidata units library (udunits) support
UUID=on: UUID support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
sunpoet@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--disable-data --disable-extra --disable-fortran --disable-ieg --disable-openmp --disable-service --enable-cdi-lib --program-transform-name="" --with-zlib=/usr --with-cgribex --with-eccodes --with-hdf5 --with-jasper --with-netcdf --with-proj --with-szlib --with-udunits2 --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PYTHON=/usr/local/bin/python3.9 MAKE=gmake PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/cdo/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cdo/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/cdo/work/.cache HOME=/wrkdirs/usr/ports/science/cdo/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/cdo/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/cdo/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/cdo/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cdo/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/cdo/work/.cache HOME=/wrkdirs/usr/ports/science/cdo/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/cdo/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/cdo/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 " BSD_INSTALL_PROGRAM="install -s -m 555"
BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
CGRIBEX="" NO_CGRIBEX="@comment " ECCODES="" NO_ECCODES="@comment " HDF5="" NO_HDF5="@comment " JASPER="" NO_JASPER="@comment " NETCDF="" NO_NETCDF="@comment " PROJ="" NO_PROJ="@comment " SZIP="" NO_SZIP="@comment " UDUNITS="" NO_UDUNITS="@comment " UUID="" NO_UUID="@comment " PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cdo" EXAMPLESDIR="share/examples/cdo" DATADIR="share/cdo" WWWDIR="www/cdo" ETCDIR="etc/cdo"
--End PLIST_SUB--
--SUB_LIST--
CGRIBEX="" NO_CGRIBEX="@comment " ECCODES="" NO_ECCODES="@comment " HDF5="" NO_HDF5="@comment " JASPER="" NO_JASPER="@comment " NETCDF="" NO_NETCDF="@comment " PROJ="" NO_PROJ="@comment " SZIP="" NO_SZIP="@comment " UDUNITS="" NO_UDUNITS="@comment " UUID="" NO_UUID="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cdo DOCSDIR=/usr/local/share/doc/cdo EXAMPLESDIR=/usr/local/share/examples/cdo WWWDIR=/usr/local/www/cdo ETCDIR=/usr/local/etc/cdo
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> cdo-2.4.0_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.2.pkg
[132amd64-default-job-09] Installing pkg-1.21.2...
[132amd64-default-job-09] Extracting pkg-1.21.2: .......... done
===> cdo-2.4.0_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of cdo-2.4.0_1
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by cdo-2.4.0_1 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by cdo-2.4.0_1 for building
=> SHA256 Checksum OK for cdo-2.4.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by cdo-2.4.0_1 for building
===> Extracting for cdo-2.4.0_1
=> SHA256 Checksum OK for cdo-2.4.0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for cdo-2.4.0_1
===> Applying FreeBSD patches for cdo-2.4.0_1 from /usr/ports/science/cdo/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> cdo-2.4.0_1 depends on package: gmake>=4.4.1 - not found
===> Installing existing package /packages/All/gmake-4.4.1.pkg
[132amd64-default-job-09] Installing gmake-4.4.1...
[132amd64-default-job-09] `-- Installing gettext-runtime-0.22.5...
[132amd64-default-job-09] | `-- Installing indexinfo-0.3.1...
[132amd64-default-job-09] | `-- Extracting indexinfo-0.3.1: .... done
[132amd64-default-job-09] `-- Extracting gettext-runtime-0.22.5: .......... done
[132amd64-default-job-09] Extracting gmake-4.4.1: .......... done
===> cdo-2.4.0_1 depends on package: gmake>=4.4.1 - found
===> Returning to build of cdo-2.4.0_1
===> cdo-2.4.0_1 depends on file: /usr/local/bin/python3.9 - not found
===> Installing existing package /packages/All/python39-3.9.18_2.pkg
[132amd64-default-job-09] Installing python39-3.9.18_2...
[132amd64-default-job-09] `-- Installing libffi-3.4.4_1...
[132amd64-default-job-09] `-- Extracting libffi-3.4.4_1: .......... done
<snip>
libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -pthread -pthread -MT mathutil.lo -MD -MP -MF .deps/mathutil.Tpo -c mathutil.c -fPIC -DPIC -o .libs/mathutil.o
libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -pthread -pthread -MT mathutil.lo -MD -MP -MF .deps/mathutil.Tpo -c mathutil.c -o mathutil.o >/dev/null 2>&1
depbase=`echo permutedsort.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -pthread -pthread -MT permutedsort.lo -MD -MP -MF $depbase.Tpo -c -o permutedsort.lo permutedsort.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -pthread -pthread -MT permutedsort.lo -MD -MP -MF .deps/permutedsort.Tpo -c permutedsort.c -fPIC -DPIC -o .libs/permutedsort.o
libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -pthread -pthread -MT permutedsort.lo -MD -MP -MF .deps/permutedsort.Tpo -c permutedsort.c -o permutedsort.o >/dev/null 2>&1
depbase=`echo qsort_reentrant.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -pthread -pthread -MT qsort_reentrant.lo -MD -MP -MF $depbase.Tpo -c -o qsort_reentrant.lo qsort_reentrant.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -pthread -pthread -MT qsort_reentrant.lo -MD -MP -MF .deps/qsort_reentrant.Tpo -c qsort_reentrant.c -fPIC -DPIC -o .libs/qsort_reentrant.o
libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -pthread -pthread -MT qsort_reentrant.lo -MD -MP -MF .deps/qsort_reentrant.Tpo -c qsort_reentrant.c -o qsort_reentrant.o >/dev/null 2>&1
depbase=`echo starutil.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -pthread -pthread -MT starutil.lo -MD -MP -MF $depbase.Tpo -c -o starutil.lo starutil.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -pthread -pthread -MT starutil.lo -MD -MP -MF .deps/starutil.Tpo -c starutil.c -fPIC -DPIC -o .libs/starutil.o
libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -pthread -pthread -MT starutil.lo -MD -MP -MF .deps/starutil.Tpo -c starutil.c -o starutil.o >/dev/null 2>&1
depbase=`echo interpolation.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -pthread -pthread -MT interpolation.lo -MD -MP -MF $depbase.Tpo -c -o interpolation.lo interpolation.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -pthread -pthread -MT interpolation.lo -MD -MP -MF .deps/interpolation.Tpo -c interpolation.c -fPIC -DPIC -o .libs/interpolation.o
libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -pthread -pthread -MT interpolation.lo -MD -MP -MF .deps/interpolation.Tpo -c interpolation.c -o interpolation.o >/dev/null 2>&1
/bin/sh ../../../libtool --tag=CC --mode=link cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -pthread -pthread -fstack-protector-strong -o libhealpix.la bl.lo healpix-utils.lo healpix.lo mathutil.lo permutedsort.lo qsort_reentrant.lo starutil.lo interpolation.lo -leccodes -lnetcdf -lsz -lpthread -lproj -leccodes -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lpthread -L/usr/local/lib
libtool: link: ar cr .libs/libhealpix.a .libs/bl.o .libs/healpix-utils.o .libs/healpix.o .libs/mathutil.o .libs/permutedsort.o .libs/qsort_reentrant.o .libs/starutil.o .libs/interpolation.o
libtool: link: ranlib .libs/libhealpix.a
libtool: link: ( cd ".libs" && rm -f "libhealpix.la" && ln -s "../libhealpix.la" "libhealpix.la" )
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/cdo/work/cdo-2.4.0/src/lib/healpix'
Making all in src
gmake[1]: Entering directory '/wrkdirs/usr/ports/science/cdo/work/cdo-2.4.0/src'
gmake all-am
gmake[2]: Entering directory '/wrkdirs/usr/ports/science/cdo/work/cdo-2.4.0/src'
c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 -pthread -MT cdo-cdo.o -MD -MP -MF .deps/cdo-cdo.Tpo -c -o cdo-cdo.o `test -f 'cdo.cc' || echo './'`cdo.cc
mv -f .deps/cdo-cdo.Tpo .deps/cdo-cdo.Po
c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 -pthread -MT cdo-Adisit.o -MD -MP -MF .deps/cdo-Adisit.Tpo -c -o cdo-Adisit.o `test -f 'Adisit.cc' || echo './'`Adisit.cc
mv -f .deps/cdo-Adisit.Tpo .deps/cdo-Adisit.Po
c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 -pthread -MT cdo-Afterburner.o -MD -MP -MF .deps/cdo-Afterburner.Tpo -c -o cdo-Afterburner.o `test -f 'Afterburner.cc' || echo './'`Afterburner.cc
mv -f .deps/cdo-Afterburner.Tpo .deps/cdo-Afterburner.Po
c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 -pthread -MT cdo-Arith.o -MD -MP -MF .deps/cdo-Arith.Tpo -c -o cdo-Arith.o `test -f 'Arith.cc' || echo './'`Arith.cc
mv -f .deps/cdo-Arith.Tpo .deps/cdo-Arith.Po
c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 -pthread -MT cdo-Arithc.o -MD -MP -MF .deps/cdo-Arithc.Tpo -c -o cdo-Arithc.o `test -f 'Arithc.cc' || echo './'`Arithc.cc
mv -f .deps/cdo-Arithc.Tpo .deps/cdo-Arithc.Po
c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 -pthread -MT cdo-Arithdays.o -MD -MP -MF .deps/cdo-Arithdays.Tpo -c -o cdo-Arithdays.o `test -f 'Arithdays.cc' || echo './'`Arithdays.cc
mv -f .deps/cdo-Arithdays.Tpo .deps/cdo-Arithdays.Po
c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 -pthread -MT cdo-Arithlat.o -MD -MP -MF .deps/cdo-Arithlat.Tpo -c -o cdo-Arithlat.o `test -f 'Arithlat.cc' || echo './'`Arithlat.cc
mv -f .deps/cdo-Arithlat.Tpo .deps/cdo-Arithlat.Po
c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 -pthread -MT cdo-Bitrounding.o -MD -MP -MF .deps/cdo-Bitrounding.Tpo -c -o cdo-Bitrounding.o `test -f 'Bitrounding.cc' || echo './'`Bitrounding.cc
mv -f .deps/cdo-Bitrounding.Tpo .deps/cdo-Bitrounding.Po
c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 -pthread -MT cdo-Cat.o -MD -MP -MF .deps/cdo-Cat.Tpo -c -o cdo-Cat.o `test -f 'Cat.cc' || echo './'`Cat.cc
mv -f .deps/cdo-Cat.Tpo .deps/cdo-Cat.Po
c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 -pthread -MT cdo-CDIread.o -MD -MP -MF .deps/cdo-CDIread.Tpo -c -o cdo-CDIread.o `test -f 'CDIread.cc' || echo './'`CDIread.cc
mv -f .deps/cdo-CDIread.Tpo .deps/cdo-CDIread.Po
c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 -pthread -MT cdo-CDItest.o -MD -MP -MF .deps/cdo-CDItest.Tpo -c -o cdo-CDItest.o `test -f 'CDItest.cc' || echo './'`CDItest.cc
mv -f .deps/cdo-CDItest.Tpo .deps/cdo-CDItest.Po
c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 -pthread -MT cdo-CDIwrite.o -MD -MP -MF .deps/cdo-CDIwrite.Tpo -c -o cdo-CDIwrite.o `test -f 'CDIwrite.cc' || echo './'`CDIwrite.cc
mv -f .deps/cdo-CDIwrite.Tpo .deps/cdo-CDIwrite.Po
c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 -pthread -MT cdo-Change.o -MD -MP -MF .deps/cdo-Change.Tpo -c -o cdo-Change.o `test -f 'Change.cc' || echo './'`Change.cc
mv -f .deps/cdo-Change.Tpo .deps/cdo-Change.Po
c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 -pthread -MT cdo-Change_e5slm.o -MD -MP -MF .deps/cdo-Change_e5slm.Tpo -c -o cdo-Change_e5slm.o `test -f 'Change_e5slm.cc' || echo './'`Change_e5slm.cc
mv -f .deps/cdo-Change_e5slm.Tpo .deps/cdo-Change_e5slm.Po
c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 -pthread -MT cdo-Cloudlayer.o -MD -MP -MF .deps/cdo-Cloudlayer.Tpo -c -o cdo-Cloudlayer.o `test -f 'Cloudlayer.cc' || echo './'`Cloudlayer.cc
mv -f .deps/cdo-Cloudlayer.Tpo .deps/cdo-Cloudlayer.Po
c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 -pthread -MT cdo-CMOR.o -MD -MP -MF .deps/cdo-CMOR.Tpo -c -o cdo-CMOR.o `test -f 'CMOR.cc' || echo './'`CMOR.cc
mv -f .deps/cdo-CMOR.Tpo .deps/cdo-CMOR.Po
c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 -pthread -MT cdo-CMOR_lite.o -MD -MP -MF .deps/cdo-CMOR_lite.Tpo -c -o cdo-CMOR_lite.o `test -f 'CMOR_lite.cc' || echo './'`CMOR_lite.cc
mv -f .deps/cdo-CMOR_lite.Tpo .deps/cdo-CMOR_lite.Po
c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 -pthread -MT cdo-CMOR_table.o -MD -MP -MF .deps/cdo-CMOR_table.Tpo -c -o cdo-CMOR_table.o `test -f 'CMOR_table.cc' || echo './'`CMOR_table.cc
mv -f .deps/cdo-CMOR_table.Tpo .deps/cdo-CMOR_table.Po
c++ -DHAVE_CONFIG_H -I. -I../libcdi/src -I../src/mpim_grid -DYAC_FOR_CDO -isystem /usr/local/include -DCDI_SIZE_TYPE=size_t -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++20 -pthread -MT cdo-Collgrid.o -MD -MP -MF .deps/cdo-Collgrid.Tpo -c -o cdo-Collgrid.o `test -f 'Collgrid.cc' || echo './'`Collgrid.cc
In file included from Collgrid.cc:11:
In file included from ./process_int.h:11:
In file included from ./cdo_cdi_wrapper.h:4:
In file included from /usr/include/c++/v1/string:525:
In file included from /usr/include/c++/v1/algorithm:716:
/usr/include/c++/v1/__algorithm/make_heap.h:28:62: error: no type named 'difference_type' in 'std::iterator_traits<std::vector<xyinfoType>>'
typedef typename iterator_traits<_RandomAccessIterator>::difference_type difference_type;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/v1/__algorithm/partial_sort.h:38:12: note: in instantiation of function template specialization 'std::__make_heap<double xyinfoType::*&, std::vector<xyinfoType>>' requested here
_VSTD::__make_heap<_Compare>(__first, __middle, __comp);
^
/usr/include/c++/v1/__algorithm/sort.h:540:12: note: in instantiation of function template specialization 'std::__partial_sort<double xyinfoType::*&, std::vector<xyinfoType>>' requested here
_VSTD::__partial_sort<_Comp_ref>(__first, __last, __last, _Comp_ref(__comp));
^
Collgrid.cc:133:15: note: in instantiation of function template specialization 'std::sort<std::vector<xyinfoType>, double xyinfoType::*>' requested here
ranges::sort(xyinfo, {}, &xyinfoType::x);
^
In file included from Collgrid.cc:11:
In file included from ./process_int.h:11:
In file included from ./cdo_cdi_wrapper.h:4:
In file included from /usr/include/c++/v1/string:525:
In file included from /usr/include/c++/v1/algorithm:716:
/usr/include/c++/v1/__algorithm/make_heap.h:29:34: error: invalid operands to binary expression ('std::vector<xyinfoType>' and 'std::vector<xyinfoType>')
difference_type __n = __last - __first;
~~~~~~ ^ ~~~~~~~
/usr/include/c++/v1/__iterator/wrap_iter.h:245:6: note: candidate template ignored: could not match '__wrap_iter' against 'vector'
auto operator-(const __wrap_iter<_Iter1>& __x, const __wrap_iter<_Iter2>& __y) _NOEXCEPT
^
/usr/include/c++/v1/__iterator/move_iterator.h:152:6: note: candidate template ignored: could not match 'move_iterator' against 'vector'
auto operator-(const move_iterator<_Iter1>& __x, const move_iterator<_Iter2>& __y)
^
/usr/include/c++/v1/__iterator/reverse_iterator.h:201:1: note: candidate template ignored: could not match 'reverse_iterator' against 'vector'
operator-(const reverse_iterator<_Iter1>& __x, const reverse_iterator<_Iter2>& __y)
^
/usr/include/c++/v1/string:582:11: note: candidate template ignored: could not match 'fpos' against 'vector'
streamoff operator-(const fpos<_StateT>& __x, const fpos<_StateT>& __y)
^
In file included from Collgrid.cc:11:
In file included from ./process_int.h:11:
In file included from ./cdo_cdi_wrapper.h:4:
In file included from /usr/include/c++/v1/string:525:
In file included from /usr/include/c++/v1/algorithm:729:
In file included from /usr/include/c++/v1/__algorithm/nth_element.h:14:
In file included from /usr/include/c++/v1/__algorithm/sort.h:15:
/usr/include/c++/v1/__algorithm/partial_sort.h:39:54: error: no type named 'difference_type' in 'std::iterator_traits<std::vector<xyinfoType>>'
typename iterator_traits<_RandomAccessIterator>::difference_type __len = __middle - __first;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/v1/__algorithm/sort.h:540:12: note: in instantiation of function template specialization 'std::__partial_sort<double xyinfoType::*&, std::vector<xyinfoType>>' requested here
_VSTD::__partial_sort<_Comp_ref>(__first, __last, __last, _Comp_ref(__comp));
^
Collgrid.cc:133:15: note: in instantiation of function template specialization 'std::sort<std::vector<xyinfoType>, double xyinfoType::*>' requested here
ranges::sort(xyinfo, {}, &xyinfoType::x);
^
Collgrid.cc:133:7: error: no member named 'sort' in namespace 'std::ranges'; did you mean 'std::sort'?
ranges::sort(xyinfo, {}, &xyinfoType::x);
^~~~~~~~~~~~
std::sort
/usr/include/c++/v1/__algorithm/sort.h:535:1: note: 'std::sort' declared here
sort(_RandomAccessIterator __first, _RandomAccessIterator __last, _Compare __comp)
^
Collgrid.cc:139:15: error: no member named 'sort' in namespace 'std::ranges'
ranges::sort(xyinfo, isSouthNorth ? cmpxy_lt : cmpxy_gt);
~~~~~~~~^
In file included from Collgrid.cc:11:
In file included from ./process_int.h:11:
In file included from ./cdo_cdi_wrapper.h:4:
In file included from /usr/include/c++/v1/string:525:
In file included from /usr/include/c++/v1/algorithm:667:
In file included from /usr/include/c++/v1/functional:493:
In file included from /usr/include/c++/v1/__algorithm/search.h:13:
/usr/include/c++/v1/__algorithm/comp.h:36:71: error: invalid operands to binary expression ('const xyinfoType' and 'const xyinfoType')
bool operator()(const _T1& __x, const _T1& __y) const {return __x == __y;}
~~~ ^ ~~~
/usr/include/c++/v1/__algorithm/equal.h:28:10: note: in instantiation of member function 'std::__equal_to<xyinfoType>::operator()' requested here
if (!__pred(*__first1, *__first2))
^
/usr/include/c++/v1/__algorithm/equal.h:38:17: note: in instantiation of function template specialization 'std::equal<std::__wrap_iter<const xyinfoType *>, std::__wrap_iter<const xyinfoType *>, std::__equal_to<xyinfoType>>' requested here
return _VSTD::equal(__first1, __last1, __first2, __equal_to<__v1, __v2>());
^
/usr/include/c++/v1/vector:3220:41: note: in instantiation of function template specialization 'std::equal<std::__wrap_iter<const xyinfoType *>, std::__wrap_iter<const xyinfoType *>>' requested here
return __sz == __y.size() && _VSTD::equal(__x.begin(), __x.end(), __y.begin());
^
/usr/include/c++/v1/__algorithm/partial_sort.h:36:17: note: in instantiation of function template specialization 'std::__1::operator==<xyinfoType, std::allocator<xyinfoType>>' requested here
if (__first == __middle)
^
/usr/include/c++/v1/__utility/pair.h:328:1: note: candidate template ignored: could not match 'const pair<_T1, _T2>' against 'const xyinfoType'
operator==(const pair<_T1,_T2>& __x, const pair<_T1,_T2>& __y)
^
/usr/include/c++/v1/__iterator/wrap_iter.h:156:6: note: candidate template ignored: could not match 'const __wrap_iter<_Iter1>' against 'const xyinfoType'
bool operator==(const __wrap_iter<_Iter1>& __x, const __wrap_iter<_Iter1>& __y) _NOEXCEPT
^
/usr/include/c++/v1/__iterator/wrap_iter.h:163:6: note: candidate template ignored: could not match 'const __wrap_iter<_Iter1>' against 'const xyinfoType'
bool operator==(const __wrap_iter<_Iter1>& __x, const __wrap_iter<_Iter2>& __y) _NOEXCEPT
^
/usr/include/c++/v1/__iterator/wrap_iter.h:163:6: note: candidate template ignored: could not match 'const __wrap_iter<_Iter1>' against 'const xyinfoType'
In file included from Collgrid.cc:11:
In file included from ./process_int.h:11:
In file included from ./cdo_cdi_wrapper.h:4:
In file included from /usr/include/c++/v1/string:525:
In file included from /usr/include/c++/v1/algorithm:729:
In file included from /usr/include/c++/v1/__algorithm/nth_element.h:14:
/usr/include/c++/v1/__algorithm/sort.h:480:60: error: no type named 'difference_type' in 'std::iterator_traits<std::vector<xyinfoType>>'
typedef typename iterator_traits<_RandomAccessIterator>::difference_type difference_type;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/v1/__algorithm/sort.h:542:12: note: in instantiation of function template specialization 'std::__sort<double xyinfoType::*&, std::vector<xyinfoType>>' requested here
_VSTD::__sort<_Comp_ref>(_VSTD::__unwrap_iter(__first), _VSTD::__unwrap_iter(__last), _Comp_ref(__comp));
^
/usr/include/c++/v1/__algorithm/sort.h:481:54: error: invalid operands to binary expression ('std::vector<xyinfoType>' and 'std::vector<xyinfoType>')
difference_type __depth_limit = 2 * __log2i(__last - __first);
~~~~~~ ^ ~~~~~~~
/usr/include/c++/v1/__iterator/wrap_iter.h:245:6: note: candidate template ignored: could not match '__wrap_iter' against 'vector'
auto operator-(const __wrap_iter<_Iter1>& __x, const __wrap_iter<_Iter2>& __y) _NOEXCEPT
^
/usr/include/c++/v1/__iterator/move_iterator.h:152:6: note: candidate template ignored: could not match 'move_iterator' against 'vector'
auto operator-(const move_iterator<_Iter1>& __x, const move_iterator<_Iter2>& __y)
^
/usr/include/c++/v1/__iterator/reverse_iterator.h:201:1: note: candidate template ignored: could not match 'reverse_iterator' against 'vector'
operator-(const reverse_iterator<_Iter1>& __x, const reverse_iterator<_Iter2>& __y)
^
/usr/include/c++/v1/string:582:11: note: candidate template ignored: could not match 'fpos' against 'vector'
streamoff operator-(const fpos<_StateT>& __x, const fpos<_StateT>& __y)
^
8 errors generated.
gmake[2]: *** [Makefile:2927: cdo-Collgrid.o] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/cdo/work/cdo-2.4.0/src'
gmake[1]: *** [Makefile:1032: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/cdo/work/cdo-2.4.0/src'
gmake: *** [Makefile:508: all-recursive] Error 1
*** Error code 1
Stop.
make: stopped in /usr/ports/science/cdo