[package - main-i386-default][biology/py-macs3] Failed for py39-MACS3-3.0.1 in build
- Go to: [ bottom of page ] [ top of archives ] [ this month ]
Date: Thu, 18 Apr 2024 13:22:13 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy17/data/main-i386-default/p2071f362ebc9_sf276adc1484/logs/py39-MACS3-3.0.1.log
Build URL: https://pkg-status.freebsd.org/beefy17/build.html?mastername=main-i386-default&build=p2071f362ebc9_sf276adc1484
Log:
=>> Building biology/py-macs3
build started at Thu Apr 18 13:20:02 UTC 2024
port directory: /usr/ports/biology/py-macs3
package name: py39-MACS3-3.0.1
building for: FreeBSD main-i386-default-job-08 15.0-CURRENT FreeBSD 15.0-CURRENT 1500018 i386
maintained by: jwb@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1640 Feb 29 01:01 /usr/ports/biology/py-macs3/Makefile
Ports top last git commit: 2071f362ebc
Ports top unclean checkout: no
Port dir last git commit: ddb11fbe977
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-1-g1e9f97d6
Host OSVERSION: 1500006
Jail OSVERSION: 1500018
Job Id: 08
!!! Jail is newer than host. (Jail: 1500018, Host: 1500006) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
OSVERSION=1500018
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
UNAME_m=i386
UNAME_p=i386
UNAME_r=15.0-CURRENT
LOCALBASE=/usr/local
UNAME_v=FreeBSD 15.0-CURRENT 1500018
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.1-1-g1e9f97d6
MASTERMNT=/usr/local/poudriere/data/.m/main-i386-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/main-i386-default/08/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=main-i386-default
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.1-1-g1e9f97d6
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=py39
MAKE_ARGS= FLAVOR=py39
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
jwb@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py39/.cache HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-macs3/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-macs3/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
--End CONFIGURE_ENV--
--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py39/.cache HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-macs3/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-macs3/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -
isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/py39-MACS3" EXAMPLESDIR="share/examples/py39-MACS3" DATADIR="share/py39-MACS3" WWWDIR="www/py39-MACS3" ETCDIR="etc/py39-MACS3"
--End PLIST_SUB--
--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py39-MACS3 DOCSDIR=/usr/local/share/doc/py39-MACS3 EXAMPLESDIR=/usr/local/share/examples/py39-MACS3 WWWDIR=/usr/local/www/py39-MACS3 ETCDIR=/usr/local/etc/py39-MACS3
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py39-MACS3-3.0.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.2.pkg
[main-i386-default-job-08] Installing pkg-1.21.2...
[main-i386-default-job-08] Extracting pkg-1.21.2: .......... done
===> py39-MACS3-3.0.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py39-MACS3-3.0.1
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-MACS3-3.0.1 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-MACS3-3.0.1 for building
=> SHA256 Checksum OK for macs3-project-MACS-v3.0.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-MACS3-3.0.1 for building
===> Extracting for py39-MACS3-3.0.1
=> SHA256 Checksum OK for macs3-project-MACS-v3.0.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for py39-MACS3-3.0.1
===> Applying FreeBSD patches for py39-MACS3-3.0.1 from /usr/ports/biology/py-macs3/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py39-MACS3-3.0.1 depends on package: py39-wheel>0 - not found
===> Installing existing package /packages/All/py39-wheel-0.43.0.pkg
[main-i386-default-job-08] Installing py39-wheel-0.43.0...
[main-i386-default-job-08] `-- Installing python39-3.9.18_2...
[main-i386-default-job-08] | `-- Installing gettext-runtime-0.22.5...
[main-i386-default-job-08] | | `-- Installing indexinfo-0.3.1...
[main-i386-default-job-08] | | `-- Extracting indexinfo-0.3.1: .... done
[main-i386-default-job-08] | `-- Extracting gettext-runtime-0.22.5: .......... done
[main-i386-default-job-08] | `-- Installing libffi-3.4.4_1...
[main-i386-default-job-08] | `-- Extracting libffi-3.4.4_1: .......... done
[main-i386-default-job-08] | `-- Installing mpdecimal-4.0.0...
<snip>
[main-i386-default-job-08] `-- Extracting py39-pyproject_hooks-1.0.0_2: .......... done
[main-i386-default-job-08] Extracting py39-build-1.2.1: .......... done
===> py39-MACS3-3.0.1 depends on package: py39-build>=0 - found
===> Returning to build of py39-MACS3-3.0.1
===> py39-MACS3-3.0.1 depends on package: py39-installer>=0 - not found
===> Installing existing package /packages/All/py39-installer-0.7.0.pkg
[main-i386-default-job-08] Installing py39-installer-0.7.0...
[main-i386-default-job-08] Extracting py39-installer-0.7.0: .......... done
===> py39-MACS3-3.0.1 depends on package: py39-installer>=0 - found
===> Returning to build of py39-MACS3-3.0.1
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for py39-MACS3-3.0.1
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for py39-MACS3-3.0.1
* Getting build dependencies for wheel...
Compiling MACS3/Signal/HMMR_EM.pyx because it changed.
Compiling MACS3/Signal/HMMR_Signal_Processing.pyx because it changed.
Compiling MACS3/Signal/HMMR_HMM.pyx because it changed.
Compiling MACS3/Signal/Prob.pyx because it changed.
Compiling MACS3/Signal/Region.pyx because it changed.
Compiling MACS3/Signal/Pileup.pyx because it changed.
Compiling MACS3/Signal/PileupV2.pyx because it changed.
Compiling MACS3/Signal/PeakModel.pyx because it changed.
Compiling MACS3/Signal/PeakDetect.pyx because it changed.
Compiling MACS3/Signal/SignalProcessing.pyx because it changed.
Compiling MACS3/Signal/FixWidthTrack.pyx because it changed.
Compiling MACS3/Signal/PairedEndTrack.pyx because it changed.
Compiling MACS3/Signal/BedGraph.pyx because it changed.
Compiling MACS3/Signal/ScoreTrack.pyx because it changed.
Compiling MACS3/Signal/CallPeakUnit.pyx because it changed.
Compiling MACS3/Signal/VariantStat.pyx because it changed.
Compiling MACS3/Signal/ReadAlignment.pyx because it changed.
Compiling MACS3/Signal/RACollection.pyx because it changed.
Compiling MACS3/Signal/UnitigRACollection.pyx because it changed.
Compiling MACS3/Signal/PosReadsInfo.pyx because it changed.
Compiling MACS3/Signal/PeakVariants.pyx because it changed.
Compiling MACS3/IO/Parser.pyx because it changed.
Compiling MACS3/IO/PeakIO.pyx because it changed.
Compiling MACS3/IO/BedGraphIO.pyx because it changed.
Compiling MACS3/IO/BAM.pyx because it changed.
[ 1/25] Cythonizing MACS3/IO/BAM.pyx
[ 2/25] Cythonizing MACS3/IO/BedGraphIO.pyx
[ 3/25] Cythonizing MACS3/IO/Parser.pyx
[ 4/25] Cythonizing MACS3/IO/PeakIO.pyx
[ 5/25] Cythonizing MACS3/Signal/BedGraph.pyx
[ 6/25] Cythonizing MACS3/Signal/CallPeakUnit.pyx
[ 7/25] Cythonizing MACS3/Signal/FixWidthTrack.pyx
[ 8/25] Cythonizing MACS3/Signal/HMMR_EM.pyx
[ 9/25] Cythonizing MACS3/Signal/HMMR_HMM.pyx
[10/25] Cythonizing MACS3/Signal/HMMR_Signal_Processing.pyx
[11/25] Cythonizing MACS3/Signal/PairedEndTrack.pyx
[12/25] Cythonizing MACS3/Signal/PeakDetect.pyx
[13/25] Cythonizing MACS3/Signal/PeakModel.pyx
[14/25] Cythonizing MACS3/Signal/PeakVariants.pyx
[15/25] Cythonizing MACS3/Signal/Pileup.pyx
[16/25] Cythonizing MACS3/Signal/PileupV2.pyx
[17/25] Cythonizing MACS3/Signal/PosReadsInfo.pyx
[18/25] Cythonizing MACS3/Signal/Prob.pyx
[19/25] Cythonizing MACS3/Signal/RACollection.pyx
[20/25] Cythonizing MACS3/Signal/ReadAlignment.pyx
[21/25] Cythonizing MACS3/Signal/Region.pyx
[22/25] Cythonizing MACS3/Signal/ScoreTrack.pyx
[23/25] Cythonizing MACS3/Signal/SignalProcessing.pyx
[24/25] Cythonizing MACS3/Signal/UnitigRACollection.pyx
[25/25] Cythonizing MACS3/Signal/VariantStat.pyx
running egg_info
creating MACS3.egg-info
writing MACS3.egg-info/PKG-INFO
writing dependency_links to MACS3.egg-info/dependency_links.txt
writing requirements to MACS3.egg-info/requires.txt
writing top-level names to MACS3.egg-info/top_level.txt
writing manifest file 'MACS3.egg-info/SOURCES.txt'
reading manifest file 'MACS3.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'make_docker_base.sh'
warning: no previously-included files matching '*.h' found under directory 'MACS3'
warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution
adding license file 'LICENSE'
writing manifest file 'MACS3.egg-info/SOURCES.txt'
* Building wheel...
running bdist_wheel
running build
running build_py
creating build
creating build/lib.freebsd-15.0-CURRENT-i386-cpython-39
creating build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3
copying MACS3/__init__.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3
creating build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/IO
copying MACS3/IO/OutputWriter.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/IO
copying MACS3/IO/__init__.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/IO
creating build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal
copying MACS3/Signal/__init__.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal
creating build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/callpeak_cmd.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/filterdup_cmd.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/__init__.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/diffpeak_cmd.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/bdgopt_cmd.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/predictd_cmd.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/randsample_cmd.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/refinepeak_cmd.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/cmbreps_cmd.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/pileup_cmd.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/hmmratac_cmd.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/callvar_cmd.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Commands
creating build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Utilities
copying MACS3/Utilities/OptValidator.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Utilities
copying MACS3/Utilities/Logger.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Utilities
copying MACS3/Utilities/Constants.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Utilities
copying MACS3/Utilities/__init__.py -> build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Utilities
running build_ext
building 'MACS3.Signal.HMMR_EM' extension
creating build/temp.freebsd-15.0-CURRENT-i386-cpython-39
creating build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3
creating build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c MACS3/Signal/HMMR_EM.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/HMMR_EM.o -w -Ofast -g0
cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/HMMR_EM.o -L/usr/local/lib -lm -o build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/HMMR_EM.cpython-39.so
building 'MACS3.Signal.HMMR_Signal_Processing' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/HMMR_Signal_Processing.o -w -Ofast -g0
cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/local/lib -lm -o build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/HMMR_Signal_Processing.cpython-39.so
building 'MACS3.Signal.HMMR_HMM' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c MACS3/Signal/HMMR_HMM.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/HMMR_HMM.o -w -Ofast -g0
cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/HMMR_HMM.o -L/usr/local/lib -lm -o build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/HMMR_HMM.cpython-39.so
building 'MACS3.Signal.Prob' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c MACS3/Signal/Prob.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/Prob.o -w -Ofast -g0
cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/Prob.o -L/usr/local/lib -lm -o build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/Prob.cpython-39.so
building 'MACS3.Signal.Region' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c MACS3/Signal/Region.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/Region.o -w -Ofast -g0
cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/Region.o -L/usr/local/lib -o build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/Region.cpython-39.so
building 'MACS3.Signal.Pileup' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I./MACS3/Signal -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c MACS3/Signal/Pileup.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/Pileup.o -w -Ofast -g0
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I./MACS3/Signal -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c MACS3/Signal/cPosValCalculation.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/cPosValCalculation.o -w -Ofast -g0
cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/Pileup.o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/cPosValCalculation.o -L/usr/local/lib -o build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/Pileup.cpython-39.so
building 'MACS3.Signal.PileupV2' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c MACS3/Signal/PileupV2.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/PileupV2.o -w -Ofast -g0
cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/PileupV2.o -L/usr/local/lib -o build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/PileupV2.cpython-39.so
building 'MACS3.Signal.PeakModel' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c MACS3/Signal/PeakModel.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/PeakModel.o -w -Ofast -g0
cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/PeakModel.o -L/usr/local/lib -o build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/PeakModel.cpython-39.so
building 'MACS3.Signal.PeakDetect' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include/python3.9 -c MACS3/Signal/PeakDetect.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/PeakDetect.o -w -Ofast -g0
cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/PeakDetect.o -L/usr/local/lib -o build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/PeakDetect.cpython-39.so
building 'MACS3.Signal.SignalProcessing' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c MACS3/Signal/SignalProcessing.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/SignalProcessing.o -w -Ofast -g0
cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/SignalProcessing.o -L/usr/local/lib -o build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/SignalProcessing.cpython-39.so
building 'MACS3.Signal.FixWidthTrack' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c MACS3/Signal/FixWidthTrack.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/FixWidthTrack.o -w -Ofast -g0
cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/FixWidthTrack.o -L/usr/local/lib -o build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/FixWidthTrack.cpython-39.so
building 'MACS3.Signal.PairedEndTrack' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c MACS3/Signal/PairedEndTrack.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/PairedEndTrack.o -w -Ofast -g0
cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/PairedEndTrack.o -L/usr/local/lib -o build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/PairedEndTrack.cpython-39.so
building 'MACS3.Signal.BedGraph' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c MACS3/Signal/BedGraph.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/BedGraph.o -w -Ofast -g0
cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/BedGraph.o -L/usr/local/lib -lm -o build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/BedGraph.cpython-39.so
building 'MACS3.Signal.ScoreTrack' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c MACS3/Signal/ScoreTrack.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/ScoreTrack.o -w -Ofast -g0
cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/ScoreTrack.o -L/usr/local/lib -lm -o build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/ScoreTrack.cpython-39.so
building 'MACS3.Signal.CallPeakUnit' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c MACS3/Signal/CallPeakUnit.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/CallPeakUnit.o -w -Ofast -g0
cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/CallPeakUnit.o -L/usr/local/lib -lm -o build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/CallPeakUnit.cpython-39.so
building 'MACS3.Signal.VariantStat' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c MACS3/Signal/VariantStat.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/VariantStat.o -w -Ofast -g0
cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/VariantStat.o -L/usr/local/lib -lm -o build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/VariantStat.cpython-39.so
building 'MACS3.Signal.ReadAlignment' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c MACS3/Signal/ReadAlignment.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/ReadAlignment.o -w -Ofast -g0
cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/ReadAlignment.o -L/usr/local/lib -lm -o build/lib.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/ReadAlignment.cpython-39.so
building 'MACS3.Signal.RACollection' extension
creating build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/fermi-lite
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.9 -c MACS3/Signal/RACollection.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/RACollection.o -w -Ofast -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.9 -c MACS3/Signal/swalign.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/Signal/swalign.o -w -Ofast -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.9 -c MACS3/fermi-lite/bfc.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/fermi-lite/bfc.o -w -Ofast -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.9 -c MACS3/fermi-lite/bseq.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/fermi-lite/bseq.o -w -Ofast -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.9 -c MACS3/fermi-lite/bubble.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/fermi-lite/bubble.o -w -Ofast -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.9 -c MACS3/fermi-lite/htab.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/fermi-lite/htab.o -w -Ofast -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.9 -c MACS3/fermi-lite/ksw.c -o build/temp.freebsd-15.0-CURRENT-i386-cpython-39/MACS3/fermi-lite/ksw.o -w -Ofast -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
In file included from MACS3/fermi-lite/ksw.c:31:
In file included from /usr/local/include/simde/x86/sse2.h:35:
In file included from /usr/local/include/simde/x86/sse.h:34:
/usr/local/include/simde/x86/../simde-f16.h:96:11: error: _Float16 is not supported on this target
96 | typedef _Float16 simde_float16;
| ^
1 error generated.
error: command '/usr/bin/cc' failed with exit code 1
ERROR Backend subprocess exited when trying to invoke build_wheel
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/py-macs3