[package - 140releng-i386-default][biology/gcta] Failed for gcta-1.26.0_4 in build
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Date: Tue, 10 Oct 2023 12:38:13 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy11/data/140releng-i386-default/de9b672bc747/logs/gcta-1.26.0_4.log
Build URL: https://pkg-status.freebsd.org/beefy11/build.html?mastername=140releng-i386-default&build=de9b672bc747
Log:
=>> Building biology/gcta
build started at Tue Oct 10 12:36:44 UTC 2023
port directory: /usr/ports/biology/gcta
package name: gcta-1.26.0_4
building for: FreeBSD 140releng-i386-default-job-07 14.0-BETA5 FreeBSD 14.0-BETA5 1400097 i386
maintained by: jwb@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> gcta-1.26.0_4 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.7.pkg
[140releng-i386-default-job-07] Installing pkg-1.20.7...
[140releng-i386-default-job-07] Extracting pkg-1.20.7: .......... done
===> gcta-1.26.0_4 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of gcta-1.26.0_4
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by gcta-1.26.0_4 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by gcta-1.26.0_4 for building
=> SHA256 Checksum OK for gcta_1.26.0_src.zip.
=> SHA256 Checksum OK for eigen-3.3.9.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by gcta-1.26.0_4 for building
===> Extracting for gcta-1.26.0_4
=> SHA256 Checksum OK for gcta_1.26.0_src.zip.
=> SHA256 Checksum OK for eigen-3.3.9.tar.gz.
Archive: /portdistfiles/gcta_1.26.0_src.zip
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/bivar_reml.cpp
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/cdflib.h
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/CommFunc.cpp
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/CommFunc.h
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/Copyright.txt
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/data.cpp
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/dcdflib.cpp
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/dcdflib.h
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/edata.cpp
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/eigen_func.cpp
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/eigen_func.h
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/ejma.cpp
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/est_hsq.cpp
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/gbat.cpp
extracting: /wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0/gcta.h
<snip>
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_difference_op<double, double>, const ArrayWrapper<Matrix<double, -1, 1, 0, -1, 1>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>' required here
: public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1, 0>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1, 0>>, Eigen::Dense>' requested here
public CwiseBinaryOpImpl<
^
popu_genet.cpp:243:29: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1, 0>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1, 0>>>' requested here
tmp = p_sub.array() - p_bar;
^
/usr/include/c++/v1/__type_traits/result_of.h:24:34: note: 'result_of<Eigen::internal::scalar_difference_op<double> (const double &, const double &)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
^
/usr/include/c++/v1/__config:808:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
# define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
^
/usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__((deprecated))
^
In file included from popu_genet.cpp:9:
In file included from ./gcta.h:26:
In file included from ./StatFunc.h:19:
In file included from /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Dense:1:
In file included from /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Core:367:
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_product_op<double> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
typedef typename std::result_of<T>::type type1;
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_product_op<double> (const double &, const double &)>' requested here
typedef typename result_of<
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1, 0>>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1, 0>>>>' requested here
template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_product_op<double, double>, const ArrayWrapper<Matrix<double, -1, 1, 0, -1, 1>>, const ArrayWrapper<Matrix<double, -1, 1, 0, -1, 1>>>>' required here
: public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1, 0>>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1, 0>>, Eigen::Dense>' requested here
public CwiseBinaryOpImpl<
^
popu_genet.cpp:244:29: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1, 0>>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1, 0>>>' requested here
s_sq = (tmp.array() * tmp.array() * n_sub.array()).sum() / ((r - 1.0) * n_bar);
^
/usr/include/c++/v1/__type_traits/result_of.h:24:34: note: 'result_of<Eigen::internal::scalar_product_op<double> (const double &, const double &)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
^
/usr/include/c++/v1/__config:808:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
# define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
^
/usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__((deprecated))
^
In file included from popu_genet.cpp:9:
In file included from ./gcta.h:26:
In file included from ./StatFunc.h:19:
In file included from /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Dense:1:
In file included from /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Core:367:
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_difference_op<float> (const float &, const float &)>' is deprecated [-Wdeprecated-declarations]
typedef typename std::result_of<T>::type type1;
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_difference_op<float> (const float &, const float &)>' requested here
typedef typename result_of<
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float>, const Eigen::Block<Eigen::Matrix<float, -1, -1, 0>, -1, 1, true>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, Eigen::Matrix<float, -1, 1, 0>>>>' requested here
template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_difference_op<float, float>, const Block<Matrix<float, -1, -1, 0, -1, -1>, -1, 1, true>, const CwiseNullaryOp<scalar_constant_op<float>, Matrix<float, -1, 1, 0, -1, 1>>>>' required here
: public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<float>, const Eigen::Block<Eigen::Matrix<float, -1, -1, 0>, -1, 1, true>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, Eigen::Matrix<float, -1, 1, 0>>, Eigen::Dense>' requested here
public CwiseBinaryOpImpl<
^
popu_genet.cpp:308:56: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float>, const Eigen::Block<Eigen::Matrix<float, -1, -1, 0>, -1, 1, true>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, Eigen::Matrix<float, -1, 1, 0>>>' requested here
for (j = 0; j < m; j++) sd_SNP[j] = (X.col(j) - VectorXf::Constant(n, _mu[_include[j]])).squaredNorm() / (n - 1.0);
^
/usr/include/c++/v1/__type_traits/result_of.h:24:34: note: 'result_of<Eigen::internal::scalar_difference_op<float> (const float &, const float &)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
^
/usr/include/c++/v1/__config:808:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
# define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
^
/usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__((deprecated))
^
In file included from popu_genet.cpp:9:
In file included from ./gcta.h:26:
In file included from ./StatFunc.h:19:
In file included from /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Dense:1:
In file included from /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Core:367:
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_abs2_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
typedef typename std::result_of<T>::type type1;
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_abs2_op<double> (const double &)>' requested here
typedef typename result_of<
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1, 0>>>' requested here
template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_abs2_op<double>, const Matrix<double, -1, 1, 0, -1, 1>>>' required here
: public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1, 0>, Eigen::Dense>' requested here
class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/Dot.h:98:31: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1, 0>>' requested here
return numext::real((*this).cwiseAbs2().sum());
^
popu_genet.cpp:225:35: note: in instantiation of member function 'Eigen::MatrixBase<Eigen::Matrix<double, -1, 1, 0>>::squaredNorm' requested here
double n_c = (n_bar_r - n_sub.squaredNorm() / n_bar_r) / (r - 1.0);
^
/usr/include/c++/v1/__type_traits/result_of.h:24:34: note: 'result_of<Eigen::internal::scalar_abs2_op<double> (const double &)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
^
/usr/include/c++/v1/__config:808:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
# define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
^
/usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__((deprecated))
^
In file included from popu_genet.cpp:9:
In file included from ./gcta.h:26:
In file included from ./StatFunc.h:19:
In file included from /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Dense:1:
In file included from /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Core:367:
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_conj_product_op<double> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
typedef typename std::result_of<T>::type type1;
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_conj_product_op<double> (const double &, const double &)>' requested here
typedef typename result_of<
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double>, const Eigen::Matrix<double, -1, 1, 0>, const Eigen::Block<Eigen::Matrix<double, -1, -1, 0>, -1, 1, true>>>' requested here
template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_conj_product_op<double, double>, const Matrix<double, -1, 1, 0, -1, 1>, const Block<Matrix<double, -1, -1, 0, -1, -1>, -1, 1, true>>>' required here
: public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double>, const Eigen::Matrix<double, -1, 1, 0>, const Eigen::Block<Eigen::Matrix<double, -1, -1, 0>, -1, 1, true>, Eigen::Dense>' requested here
public CwiseBinaryOpImpl<
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/Dot.h:37:23: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double>, const Eigen::Matrix<double, -1, 1, 0>, const Eigen::Block<Eigen::Matrix<double, -1, -1, 0>, -1, 1, true>>' requested here
return a.template binaryExpr<conj_prod>(b).sum();
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/Dot.h:84:55: note: in instantiation of member function 'Eigen::internal::dot_nocheck<Eigen::Matrix<double, -1, 1, 0>, Eigen::Block<Eigen::Matrix<double, -1, -1, 0>, -1, 1, true>, false>::run' requested here
return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
^
popu_genet.cpp:239:24: note: in instantiation of function template specialization 'Eigen::MatrixBase<Eigen::Matrix<double, -1, 1, 0>>::dot<Eigen::Block<Eigen::Matrix<double, -1, -1, 0>, -1, 1, true>>' requested here
p_sub[j]=x.dot(S.col(j))*0.5/n_sub[j];
^
/usr/include/c++/v1/__type_traits/result_of.h:24:34: note: 'result_of<Eigen::internal::scalar_conj_product_op<double> (const double &, const double &)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
^
/usr/include/c++/v1/__config:808:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
# define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
^
/usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__((deprecated))
^
In file included from popu_genet.cpp:9:
In file included from ./gcta.h:26:
In file included from ./StatFunc.h:19:
In file included from /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Dense:1:
In file included from /wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/Core:367:
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_abs2_op<float> (const float &)>' is deprecated [-Wdeprecated-declarations]
typedef typename std::result_of<T>::type type1;
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_abs2_op<float> (const float &)>' requested here
typedef typename result_of<
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float>, const Eigen::Block<Eigen::Matrix<float, -1, -1, 0>, -1, 1, true>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, Eigen::Matrix<float, -1, 1, 0>>>>>' requested here
template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_abs2_op<float>, const CwiseBinaryOp<scalar_difference_op<float, float>, const Block<Matrix<float, -1, -1, 0, -1, -1>, -1, 1, true>, const CwiseNullaryOp<scalar_constant_op<float>, Matrix<float, -1, 1, 0, -1, 1>>>>>' required here
: public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float>, const Eigen::Block<Eigen::Matrix<float, -1, -1, 0>, -1, 1, true>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, Eigen::Matrix<float, -1, 1, 0>>>, Eigen::Dense>' requested here
class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
^
/wrkdirs/usr/ports/biology/gcta/work/eigen-3.3.9/Eigen/src/Core/Dot.h:98:31: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float>, const Eigen::Block<Eigen::Matrix<float, -1, -1, 0>, -1, 1, true>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, Eigen::Matrix<float, -1, 1, 0>>>>' requested here
return numext::real((*this).cwiseAbs2().sum());
^
popu_genet.cpp:308:99: note: in instantiation of member function 'Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<float>, const Eigen::Block<Eigen::Matrix<float, -1, -1, 0>, -1, 1, true>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, Eigen::Matrix<float, -1, 1, 0>>>>::squaredNorm' requested here
for (j = 0; j < m; j++) sd_SNP[j] = (X.col(j) - VectorXf::Constant(n, _mu[_include[j]])).squaredNorm() / (n - 1.0);
^
/usr/include/c++/v1/__type_traits/result_of.h:24:34: note: 'result_of<Eigen::internal::scalar_abs2_op<float> (const float &)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
^
/usr/include/c++/v1/__config:808:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
# define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
^
/usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__((deprecated))
^
2 warnings generated.
6 warnings generated.
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/gcta/work/gcta-1.26.0'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/gcta