From nobody Tue Oct 10 10:28:01 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4S4XD16FLzz4wXfj for ; Tue, 10 Oct 2023 10:28:01 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4S4XD12yn0z3VTF for ; Tue, 10 Oct 2023 10:28:01 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1696933681; a=rsa-sha256; cv=none; b=qHE2tiC6Ad9XDm77Np4QDzMS4KtKV39mQrlRpXMP7iSrR+DP/VlkHg/ymlf4FiFWgCbPVj DvRJJxbWDMwSEDZYQSlR66q66UXuq9HQZL9X2kgH6QzuX6vnXfwz9Gh8fITj5xa9TPdAoy oRcxu7sVkdIgVurLFFrLTtCkzX451JYA0fZZatD7M4Sc5ASy7nPLSaBn61hIFfz9fkHqqz KoehHJh46yCLm6OM8JZz7VDgnY4ixtholeh0j8VJVOylO8AAyM0QM6kde/Mq0cyHbBZ/2y 01+TW2GvcTgXfr1DebTJVi6cXAObnaKNnNCuq7Yaf+nwsTxQpaGWlWLYPqWOXQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1696933681; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=Q/AhPePQISGiDOKPZUFwyMV0EjY5cYGrHhtidilzxxg=; b=mv85rEfTgNDHZIxjZABpTY/9GVkf1/P8Cdo+qTMG8CTE2BcucXAhm7Yt5y4dBTST/c2bsB rwfDrNtuRqxzZ+h8G4K+yp5bdsZgEW/CTugohpPdEzsJDbnwW5ij4cOO6pKUud2l25OiV5 sYF9/vSPBuhUOBPA+qv9aGLksBhwPvcOyRNtrKWBDiGRC2emUI0dMm5iw6vK7UK3FRQdDl 0SOfj4p8Nqefke9XmZUZDoS55kRe1oTVknUUQpa+EhcFBJD008vLagwIBBMI0fLHRlPWeb /3T8pitoNjccgEQUUgYF6RQfdzRq29TslphCHjTZ8KLB2zBoQ2rY3kJ8A8B2BQ== Received: from beefy6.nyi.freebsd.org (beefy6.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:15]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4S4XD11x01zb5g for ; Tue, 10 Oct 2023 10:28:01 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 305c by beefy6.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy6.nyi.freebsd.org); Tue, 10 Oct 2023 10:28:01 +0000 To: yuri@FreeBSD.org Subject: [package - 124amd64-default][science/jdftx] Failed for jdftx-1.7.0_3 in build Cc: pkg-fallout@FreeBSD.org Date: Tue, 10 Oct 2023 10:28:01 +0000 Message-Id: <65252731.305c.212e629f@beefy6.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy6/data/124amd64-default/de9b672bc747/logs/jdftx-1.7.0_3.log Build URL: https://pkg-status.freebsd.org/beefy6/build.html?mastername=124amd64-default&build=de9b672bc747 Log: =>> Building science/jdftx build started at Tue Oct 10 10:15:15 UTC 2023 port directory: /usr/ports/science/jdftx package name: jdftx-1.7.0_3 building for: FreeBSD 124amd64-default-job-13 12.4-RELEASE-p6 FreeBSD 12.4-RELEASE-p6 amd64 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1500000 Jail OSVERSION: 1204000 Job Id: 13 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1204000 UNAME_v=FreeBSD 12.4-RELEASE-p6 UNAME_r=12.4-RELEASE-p6 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/124amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/124amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=124amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/124amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for jdftx-1.7.0_3: HDF5=off: HDF-5 data format support LIBXC=on: Use LibXC for additional exchange-correlation functionals MPI=on: MPI (Message Passing Interface) support OCTAVE=off: With Octave support (only for one script: dryRunToPDB) SCALAPACK=off: Enable ScaLAPACK support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/wrkdirs/usr/ports/science/jdftx/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/jdftx/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/jdftx/work/.cache HOME=/wrkdirs/usr/ports/science/jdftx/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/jdftx/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/jdftx/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/wrkdirs/usr/ports/science/jdftx/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/jdftx/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/jdftx/work/.cache HOME=/wrkdirs/usr/ports/science/jdftx/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/jdftx/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/jdftx/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/ob jdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=12.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/jdftx" EXAMPLESDIR="share/examples/jdftx" DATADIR="share/jdftx" WWWDIR="www/jdftx" ETCDIR="etc/jdftx" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/jdftx DOCSDIR=/usr/local/share/doc/jdftx EXAMPLESDIR=/usr/local/share/examples/jdftx WWWDIR=/usr/local/www/jdftx ETCDIR=/usr/local/etc/jdftx --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=3 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: x86_64-unknown-freebsd12.4 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: x86_64-unknown-freebsd12.4 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: x86_64-unknown-freebsd12.4 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=12.4-RELEASE-p6 OSREL=12.4 OSVERSION=1204000 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv3+ accepted by the user =========================================================================== =================================================== ===> jdftx-1.7.0_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.7.pkg [124amd64-default-job-13] Installing pkg-1.20.7... [124amd64-default-job-13] Extracting pkg-1.20.7: .......... done ===> jdftx-1.7.0_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of jdftx-1.7.0_3 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3+ accepted by the user ===> Fetching all distfiles required by jdftx-1.7.0_3 for building =========================================================================== =================================================== ===> License GPLv3+ accepted by the user ===> Fetching all distfiles required by jdftx-1.7.0_3 for building => SHA256 Checksum OK for shankar1729-jdftx-v1.7.0_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3+ accepted by the user ===> Fetching all distfiles required by jdftx-1.7.0_3 for building ===> Extracting for jdftx-1.7.0_3 => SHA256 Checksum OK for shankar1729-jdftx-v1.7.0_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for jdftx-1.7.0_3 ===> Applying FreeBSD patches for jdftx-1.7.0_3 from /usr/ports/science/jdftx/files =========================================================================== =================================================== ===> jdftx-1.7.0_3 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-5.2.15.pkg [124amd64-default-job-13] Installing bash-5.2.15... [124amd64-default-job-13] `-- Installing gettext-runtime-0.22_1... [124amd64-default-job-13] | `-- Installing indexinfo-0.3.1... [124amd64-default-job-13] | `-- Extracting indexinfo-0.3.1: .... done [124amd64-default-job-13] `-- Extracting gettext-runtime-0.22_1: .......... done [124amd64-default-job-13] `-- Installing readline-8.2.1... In file included from /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/core/ScalarField.h:31: In file included from /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/core/scalar.h:25: In file included from /usr/include/c++/v1/vector:275: In file included from /usr/include/c++/v1/__bit_reference:15: In file included from /usr/include/c++/v1/algorithm:653: In file included from /usr/include/c++/v1/functional:500: In file included from /usr/include/c++/v1/__functional/function.h:20: /usr/include/c++/v1/__memory/shared_ptr.h:315:9: warning: destructor called on non-final 'FunctionalLDA' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] __get_elem()->~_Tp(); ^ /usr/include/c++/v1/__memory/shared_ptr.h:290:14: note: in instantiation of member function 'std::__shared_ptr_emplace>::__on_zero_shared' requested here explicit __shared_ptr_emplace(_Alloc __a, _Args&& ...__args) ^ /usr/include/c++/v1/__memory/shared_ptr.h:1106:55: note: in instantiation of function template specialization 'std::__shared_ptr_emplace>::__shared_ptr_emplace' requested here ::new ((void*)_VSTD::addressof(*__guard.__get())) _ControlBlock(__a, _VSTD::forward<_Args>(__args)...); ^ /usr/include/c++/v1/__memory/shared_ptr.h:1115:19: note: in instantiation of function template specialization 'std::allocate_shared, LDA_Variant &, double &, void>' requested here return _VSTD::allocate_shared<_Tp>(allocator<_Tp>(), _VSTD::forward<_Args>(__args)...); ^ /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/electronic/ExCorr.cpp:365:28: note: in instantiation of function template specialization 'std::make_shared' requested here { internal.push_back(std::make_shared(variant, scaleFac)); ^ /usr/include/c++/v1/__memory/shared_ptr.h:315:24: note: qualify call to silence this warning __get_elem()->~_Tp(); ^ /usr/include/c++/v1/__memory/shared_ptr.h:315:9: warning: destructor called on non-final 'FunctionalGGA' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] __get_elem()->~_Tp(); ^ /usr/include/c++/v1/__memory/shared_ptr.h:290:14: note: in instantiation of member function 'std::__shared_ptr_emplace>::__on_zero_shared' requested here explicit __shared_ptr_emplace(_Alloc __a, _Args&& ...__args) ^ /usr/include/c++/v1/__memory/shared_ptr.h:1106:55: note: in instantiation of function template specialization 'std::__shared_ptr_emplace>::__shared_ptr_emplace' requested here ::new ((void*)_VSTD::addressof(*__guard.__get())) _ControlBlock(__a, _VSTD::forward<_Args>(__args)...); ^ /usr/include/c++/v1/__memory/shared_ptr.h:1115:19: note: in instantiation of function template specialization 'std::allocate_shared, GGA_Variant &, double &, void>' requested here return _VSTD::allocate_shared<_Tp>(allocator<_Tp>(), _VSTD::forward<_Args>(__args)...); ^ /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/electronic/ExCorr.cpp:368:28: note: in instantiation of function template specialization 'std::make_shared' requested here { internal.push_back(std::make_shared(variant, scaleFac)); ^ /usr/include/c++/v1/__memory/shared_ptr.h:315:24: note: qualify call to silence this warning __get_elem()->~_Tp(); ^ /usr/include/c++/v1/__memory/shared_ptr.h:315:9: warning: destructor called on non-final 'FunctionalMGGA' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] __get_elem()->~_Tp(); ^ /usr/include/c++/v1/__memory/shared_ptr.h:290:14: note: in instantiation of member function 'std::__shared_ptr_emplace>::__on_zero_shared' requested here explicit __shared_ptr_emplace(_Alloc __a, _Args&& ...__args) ^ /usr/include/c++/v1/__memory/shared_ptr.h:1106:55: note: in instantiation of function template specialization 'std::__shared_ptr_emplace>::__shared_ptr_emplace' requested here ::new ((void*)_VSTD::addressof(*__guard.__get())) _ControlBlock(__a, _VSTD::forward<_Args>(__args)...); ^ /usr/include/c++/v1/__memory/shared_ptr.h:1115:19: note: in instantiation of function template specialization 'std::allocate_shared, mGGA_Variant &, double &, void>' requested here return _VSTD::allocate_shared<_Tp>(allocator<_Tp>(), _VSTD::forward<_Args>(__args)...); ^ /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/electronic/ExCorr.cpp:371:28: note: in instantiation of function template specialization 'std::make_shared' requested here { internal.push_back(std::make_shared(variant, scaleFac)); ^ /usr/include/c++/v1/__memory/shared_ptr.h:315:24: note: qualify call to silence this warning __get_elem()->~_Tp(); ^ 3 warnings generated. [ 49%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/ExCorr_OrbitalDep_GLLBsc.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/wrkdirs/usr/ports/science/jdftx/work/.build -I/wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=c++0x -MD -MT CMakeFiles/jdftxlib.dir/electronic/ExCorr_OrbitalDep_GLLBsc.cpp.o -MF CMakeFiles/jdftxlib.dir/electronic/ExCorr_OrbitalDep_GLLBsc.cpp.o.d -o CMakeFiles/jdftxlib.dir/electronic/ExCorr_OrbitalDep_GLLBsc.cpp.o -c /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/electronic/ExCorr_OrbitalDep_GLLBsc.cpp [ 50%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/ExactExchange.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/wrkdirs/usr/ports/science/jdftx/work/.build -I/wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=c++0x -MD -MT CMakeFiles/jdftxlib.dir/electronic/ExactExchange.cpp.o -MF CMakeFiles/jdftxlib.dir/electronic/ExactExchange.cpp.o.d -o CMakeFiles/jdftxlib.dir/electronic/ExactExchange.cpp.o -c /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/electronic/ExactExchange.cpp [ 51%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/IonInfo.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/wrkdirs/usr/ports/science/jdftx/work/.build -I/wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=c++0x -MD -MT CMakeFiles/jdftxlib.dir/electronic/IonInfo.cpp.o -MF CMakeFiles/jdftxlib.dir/electronic/IonInfo.cpp.o.d -o CMakeFiles/jdftxlib.dir/electronic/IonInfo.cpp.o -c /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/electronic/IonInfo.cpp [ 51%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/IonicDynamics.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/wrkdirs/usr/ports/science/jdftx/work/.build -I/wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=c++0x -MD -MT CMakeFiles/jdftxlib.dir/electronic/IonicDynamics.cpp.o -MF CMakeFiles/jdftxlib.dir/electronic/IonicDynamics.cpp.o.d -o CMakeFiles/jdftxlib.dir/electronic/IonicDynamics.cpp.o -c /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/electronic/IonicDynamics.cpp [ 52%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/IonicMinimizer.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/wrkdirs/usr/ports/science/jdftx/work/.build -I/wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=c++0x -MD -MT CMakeFiles/jdftxlib.dir/electronic/IonicMinimizer.cpp.o -MF CMakeFiles/jdftxlib.dir/electronic/IonicMinimizer.cpp.o.d -o CMakeFiles/jdftxlib.dir/electronic/IonicMinimizer.cpp.o -c /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/electronic/IonicMinimizer.cpp /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/electronic/IonicMinimizer.cpp:168:17: warning: loop variable 'sp' creates a copy from type 'const std::shared_ptr' [-Wrange-loop-construct] for(const auto sp: e.iInfo.species) ^ /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/electronic/IonicMinimizer.cpp:168:6: note: use reference type 'const std::shared_ptr &' to prevent copying for(const auto sp: e.iInfo.species) ^~~~~~~~~~~~~~ & 1 warning generated. [ 52%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/LatticeMinimizer.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/wrkdirs/usr/ports/science/jdftx/work/.build -I/wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=c++0x -MD -MT CMakeFiles/jdftxlib.dir/electronic/LatticeMinimizer.cpp.o -MF CMakeFiles/jdftxlib.dir/electronic/LatticeMinimizer.cpp.o.d -o CMakeFiles/jdftxlib.dir/electronic/LatticeMinimizer.cpp.o -c /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/electronic/LatticeMinimizer.cpp [ 54%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/Polarizability.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/wrkdirs/usr/ports/science/jdftx/work/.build -I/wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=c++0x -MD -MT CMakeFiles/jdftxlib.dir/electronic/Polarizability.cpp.o -MF CMakeFiles/jdftxlib.dir/electronic/Polarizability.cpp.o.d -o CMakeFiles/jdftxlib.dir/electronic/Polarizability.cpp.o -c /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/electronic/Polarizability.cpp [ 54%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/RadialSchrodinger.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/wrkdirs/usr/ports/science/jdftx/work/.build -I/wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=c++0x -MD -MT CMakeFiles/jdftxlib.dir/electronic/RadialSchrodinger.cpp.o -MF CMakeFiles/jdftxlib.dir/electronic/RadialSchrodinger.cpp.o.d -o CMakeFiles/jdftxlib.dir/electronic/RadialSchrodinger.cpp.o -c /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/electronic/RadialSchrodinger.cpp [ 55%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/SCF.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/wrkdirs/usr/ports/science/jdftx/work/.build -I/wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include 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/usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=c++0x -MD -MT CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_energy.cpp.o -MF CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_energy.cpp.o.d -o CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_energy.cpp.o -c /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/electronic/SpeciesInfo_energy.cpp [ 60%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_internal.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/wrkdirs/usr/ports/science/jdftx/work/.build -I/wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -O2 -pipe -fstack-protector-strong 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-I/wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=c++0x -MD -MT CMakeFiles/jdftxlib.dir/fluid/LinearPCM.cpp.o -MF CMakeFiles/jdftxlib.dir/fluid/LinearPCM.cpp.o.d -o CMakeFiles/jdftxlib.dir/fluid/LinearPCM.cpp.o -c /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/fluid/LinearPCM.cpp [ 78%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/MixedFMT.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/wrkdirs/usr/ports/science/jdftx/work/.build -I/wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -O2 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/wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/fluid/SO3quad.cpp [ 83%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/SaLSA.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/wrkdirs/usr/ports/science/jdftx/work/.build -I/wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=c++0x -MD -MT CMakeFiles/jdftxlib.dir/fluid/SaLSA.cpp.o -MF CMakeFiles/jdftxlib.dir/fluid/SaLSA.cpp.o.d -o CMakeFiles/jdftxlib.dir/fluid/SaLSA.cpp.o -c /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/fluid/SaLSA.cpp /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/fluid/SaLSA.cpp:344:22: warning: variable 'chiPol' set but not used [-Wunused-but-set-variable] double chiRot = 0., chiPol = 0.; ^ 1 warning generated. [ 84%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/TranslationOperator.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/wrkdirs/usr/ports/science/jdftx/work/.build -I/wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=c++0x -MD -MT CMakeFiles/jdftxlib.dir/fluid/TranslationOperator.cpp.o -MF CMakeFiles/jdftxlib.dir/fluid/TranslationOperator.cpp.o.d -o CMakeFiles/jdftxlib.dir/fluid/TranslationOperator.cpp.o -c /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/fluid/TranslationOperator.cpp In file included from /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/fluid/TranslationOperator.cpp:20: In file included from /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/fluid/TranslationOperator.h:28: In file included from /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/core/ScalarField.h:33: In file included from /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/core/ManagedMemory.h:25: /wrkdirs/usr/ports/science/jdftx/work/jdftx-1.7.0/jdftx/core/BlasExtra.h:30:10: fatal error: 'gsl/gsl_cblas.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated. *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/science/jdftx/work/.build *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/science/jdftx/work/.build *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/science/jdftx/work/.build *** Error code 1 Stop. make: stopped in /usr/ports/science/jdftx