[exp - 124amd64-default-build-as-user][math/flann] Failed for flann-1.9.2_3 in build
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Date: Tue, 10 Oct 2023 04:26:19 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/package19/data/124amd64-default-build-as-user/9ce8c29b90c7/logs/flann-1.9.2_3.log
Build URL: https://pkg-status.freebsd.org/package19/build.html?mastername=124amd64-default-build-as-user&build=9ce8c29b90c7
Log:
=>> Building math/flann
build started at Tue Oct 10 04:19:04 UTC 2023
port directory: /usr/ports/math/flann
package name: flann-1.9.2_3
building for: FreeBSD 124amd64-default-build-as-user-job-05 12.4-RELEASE-p6 FreeBSD 12.4-RELEASE-p6 amd64
maintained by: yuri@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> flann-1.9.2_3 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.7.pkg
[124amd64-default-build-as-user-job-05] Installing pkg-1.20.7...
[124amd64-default-build-as-user-job-05] Extracting pkg-1.20.7: .......... done
===> flann-1.9.2_3 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of flann-1.9.2_3
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by flann-1.9.2_3 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by flann-1.9.2_3 for building
=> SHA256 Checksum OK for tkircher-flann-1.9.2_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by flann-1.9.2_3 for building
===> Extracting for flann-1.9.2_3
=> SHA256 Checksum OK for tkircher-flann-1.9.2_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for flann-1.9.2_3
===> Applying FreeBSD patches for flann-1.9.2_3 from /usr/ports/math/flann/files
===========================================================================
=======================<phase: build-depends >============================
===> flann-1.9.2_3 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.26.1_3.pkg
[124amd64-default-build-as-user-job-05] Installing cmake-core-3.26.1_3...
[124amd64-default-build-as-user-job-05] `-- Installing expat-2.5.0...
[124amd64-default-build-as-user-job-05] `-- Extracting expat-2.5.0: .......... done
[124amd64-default-build-as-user-job-05] `-- Installing jsoncpp-1.9.5...
[124amd64-default-build-as-user-job-05] `-- Extracting jsoncpp-1.9.5: .......... done
[124amd64-default-build-as-user-job-05] `-- Installing libuv-1.46.0...
[124amd64-default-build-as-user-job-05] `-- Extracting libuv-1.46.0: .......... done
[124amd64-default-build-as-user-job-05] `-- Installing rhash-1.4.4...
[124amd64-default-build-as-user-job-05] | `-- Installing gettext-runtime-0.22_1...
[124amd64-default-build-as-user-job-05] | | `-- Installing indexinfo-0.3.1...
[124amd64-default-build-as-user-job-05] | | `-- Extracting indexinfo-0.3.1: .... done
[124amd64-default-build-as-user-job-05] | `-- Extracting gettext-runtime-0.22_1: .......... done
[124amd64-default-build-as-user-job-05] `-- Extracting rhash-1.4.4: .......... done
[124amd64-default-build-as-user-job-05] Extracting cmake-core-3.26.1_3: .......... done
===> flann-1.9.2_3 depends on file: /usr/local/bin/cmake - found
===> Returning to build of flann-1.9.2_3
===> flann-1.9.2_3 depends on executable: ninja - not found
===> Installing existing package /packages/All/ninja-1.11.1,2.pkg
[124amd64-default-build-as-user-job-05] Installing ninja-1.11.1,2...
[124amd64-default-build-as-user-job-05] `-- Installing python39-3.9.18...
[124amd64-default-build-as-user-job-05] | `-- Installing libffi-3.4.4...
[124amd64-default-build-as-user-job-05] | `-- Extracting libffi-3.4.4: .......... done
[124amd64-default-build-as-user-job-05] | `-- Installing mpdecimal-2.5.1...
[124amd64-default-build-as-user-job-05] | `-- Extracting mpdecimal-2.5.1: .......... done
[124amd64-default-build-as-user-job-05] | `-- Installing readline-8.2.1...
[124amd64-default-build-as-user-job-05] | `-- Extracting readline-8.2.1: .......... done
[124amd64-default-build-as-user-job-05] `-- Extracting python39-3.9.18: .......... done
[124amd64-default-build-as-user-job-05] Extracting ninja-1.11.1,2: ........ done
=====
Message from python39-3.9.18:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py39-gdbm databases/py-gdbm@py39
py39-sqlite3 databases/py-sqlite3@py39
py39-tkinter x11-toolkits/py-tkinter@py39
===> flann-1.9.2_3 depends on executable: ninja - found
===> Returning to build of flann-1.9.2_3
===> flann-1.9.2_3 depends on package: pkgconf>=1.3.0_1 - not found
===> Installing existing package /packages/All/pkgconf-2.0.3,1.pkg
[124amd64-default-build-as-user-job-05] Installing pkgconf-2.0.3,1...
[124amd64-default-build-as-user-job-05] Extracting pkgconf-2.0.3,1: .......... done
===> flann-1.9.2_3 depends on package: pkgconf>=1.3.0_1 - found
===> Returning to build of flann-1.9.2_3
===========================================================================
=======================<phase: lib-depends >============================
===> flann-1.9.2_3 depends on shared library: libhdf5.so - not found
===> Installing existing package /packages/All/hdf5-1.12.2_2,1.pkg
[124amd64-default-build-as-user-job-05] Installing hdf5-1.12.2_2,1...
[124amd64-default-build-as-user-job-05] `-- Installing gcc12-12.2.0_6...
[124amd64-default-build-as-user-job-05] | `-- Installing binutils-2.40_4,1...
[124amd64-default-build-as-user-job-05] | | `-- Installing zstd-1.5.5...
[124amd64-default-build-as-user-job-05] | | `-- Installing liblz4-1.9.4,1...
[124amd64-default-build-as-user-job-05] | | `-- Extracting liblz4-1.9.4,1: .......... done
[124amd64-default-build-as-user-job-05] | | `-- Extracting zstd-1.5.5: .......... done
[124amd64-default-build-as-user-job-05] | `-- Extracting binutils-2.40_4,1: .......... done
[124amd64-default-build-as-user-job-05] | `-- Installing gmp-6.3.0...
[124amd64-default-build-as-user-job-05] | `-- Extracting gmp-6.3.0: .......... done
[124amd64-default-build-as-user-job-05] | `-- Installing mpc-1.3.1_1...
[124amd64-default-build-as-user-job-05] | | `-- Installing mpfr-4.2.1,1...
[124amd64-default-build-as-user-job-05] | | `-- Extracting mpfr-4.2.1,1: .......... done
[124amd64-default-build-as-user-job-05] | `-- Extracting mpc-1.3.1_1: ......... done
[124amd64-default-build-as-user-job-05] `-- Extracting gcc12-12.2.0_6: .......... done
[124amd64-default-build-as-user-job-05] `-- Installing libaec-1.0.6...
[124amd64-default-build-as-user-job-05] `-- Extracting libaec-1.0.6: .......... done
[124amd64-default-build-as-user-job-05] Extracting hdf5-1.12.2_2,1: .......... done
=====
Message from gcc12-12.2.0_6:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc12
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> flann-1.9.2_3 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so)
===> Returning to build of flann-1.9.2_3
===> flann-1.9.2_3 depends on shared library: liblz4.so - found (/usr/local/lib/liblz4.so)
===> flann-1.9.2_3 depends on shared library: libsz.so - found (/usr/local/lib/libsz.so)
===========================================================================
=======================<phase: configure >============================
===> Configuring for flann-1.9.2_3
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/math/flann/work/.build
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- The C compiler identification is Clang 13.0.0
-- The CXX compiler identification is Clang 13.0.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found HDF5: hdf5-shared (found version "1.12.2")
-- Found PkgConfig: /usr/local/bin/pkgconf (found version "2.0.3")
-- Checking for module 'liblz4'
-- Found liblz4, version 1.9.4
-- Install prefix: /usr/local
-- Build type: Release
-- Building C bindings: ON
-- Building examples: OFF
-- Building tests: OFF
-- Building documentation: OFF
-- Building python bindings: OFF
-- Building matlab bindings: OFF
-- Building CUDA library: OFF
-- Using OpenMP support: OFF
-- Using MPI support: OFF
-- Configuring done (9.4s)
-- Generating done (0.1s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_CXX_FLAGS_DEBUG
CMAKE_C_FLAGS_DEBUG
CMAKE_C_FLAGS_RELEASE
CMAKE_EXE_LINKER_FLAGS
CMAKE_MODULE_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
FETCHCONTENT_FULLY_DISCONNECTED
THREADS_HAVE_PTHREAD_ARG
-- Build files have been written to: /wrkdirs/usr/ports/math/flann/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for flann-1.9.2_3
[ 10% 3/10] /usr/bin/c++ -DFLANN_EXPORTS -D_FLANN_VERSION=1.9.2 -I/wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -Wall -Wno-unknown-pragmas -Wno-unused-function -MD -MT src/cpp/CMakeFiles/flann_cpp.dir/flann/flann_cpp.cpp.o -MF src/cpp/CMakeFiles/flann_cpp.dir/flann/flann_cpp.cpp.o.d -o src/cpp/CMakeFiles/flann_cpp.dir/flann/flann_cpp.cpp.o -c /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/flann_cpp.cpp
In file included from /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/flann_cpp.cpp:30:
In file included from /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/flann.hpp:45:
In file included from /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/algorithms/all_indices.h:43:
In file included from /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/algorithms/autotuned_index.h:36:
/wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/nn/index_testing.h:253:11: warning: variable 'p1' set but not used [-Wunused-but-set-variable]
float p1;
^
1 warning generated.
[ 20% 4/10] /usr/bin/c++ -DFLANN_STATIC -DFLANN_USE_CUDA -D_FLANN_VERSION=1.9.2 -I/wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -Wall -Wno-unknown-pragmas -Wno-unused-function -fPIC -MD -MT src/cpp/CMakeFiles/flann_cpp_s.dir/flann/flann_cpp.cpp.o -MF src/cpp/CMakeFiles/flann_cpp_s.dir/flann/flann_cpp.cpp.o.d -o src/cpp/CMakeFiles/flann_cpp_s.dir/flann/flann_cpp.cpp.o -c /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/flann_cpp.cpp
In file included from /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/flann_cpp.cpp:30:
In file included from /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/flann.hpp:45:
In file included from /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/algorithms/all_indices.h:43:
In file included from /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/algorithms/autotuned_index.h:36:
/wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/nn/index_testing.h:253:11: warning: variable 'p1' set but not used [-Wunused-but-set-variable]
float p1;
^
1 warning generated.
[ 30% 5/10] : && /usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fstack-protector-strong -L/usr/local/lib -shared -Wl,-soname,libflann_cpp.so.1.9 -o lib/libflann_cpp.so.1.9.2 src/cpp/CMakeFiles/flann_cpp.dir/flann/flann_cpp.cpp.o -Wl,-rpath,/usr/local/lib: /usr/local/lib/liblz4.so && :
[ 40% 6/10] /usr/local/bin/cmake -E cmake_symlink_library lib/libflann_cpp.so.1.9.2 lib/libflann_cpp.so.1.9 lib/libflann_cpp.so && :
[ 50% 7/10] : && /usr/local/bin/cmake -E rm -f lib/libflann_cpp_s.a && /usr/bin/llvm-ar qc lib/libflann_cpp_s.a src/cpp/CMakeFiles/flann_cpp_s.dir/flann/flann_cpp.cpp.o && /usr/bin/llvm-ranlib lib/libflann_cpp_s.a && :
[ 60% 7/10] /usr/bin/c++ -DFLANN_STATIC -D_FLANN_VERSION=1.9.2 -I/wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -Wall -Wno-unknown-pragmas -Wno-unused-function -fPIC -MD -MT src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o -MF src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o.d -o src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o -c /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/flann.cpp
FAILED: src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o
/usr/bin/c++ -DFLANN_STATIC -D_FLANN_VERSION=1.9.2 -I/wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -Wall -Wno-unknown-pragmas -Wno-unused-function -fPIC -MD -MT src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o -MF src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o.d -o src/cpp/CMakeFiles/flann_s.dir/flann/flann.cpp.o -c /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/flann.cpp
In file included from /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/flann.cpp:31:
In file included from /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/flann.h:603:
In file included from /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/flann.hpp:45:
In file included from /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/algorithms/all_indices.h:43:
In file included from /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/algorithms/autotuned_index.h:36:
/wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/nn/index_testing.h:253:11: warning: variable 'p1' set but not used [-Wunused-but-set-variable]
float p1;
^
[ 70% 7/10] /usr/bin/c++ -DFLANN_EXPORTS -D_FLANN_VERSION=1.9.2 -I/wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -Wall -Wno-unknown-pragmas -Wno-unused-function -MD -MT src/cpp/CMakeFiles/flann.dir/flann/flann.cpp.o -MF src/cpp/CMakeFiles/flann.dir/flann/flann.cpp.o.d -o src/cpp/CMakeFiles/flann.dir/flann/flann.cpp.o -c /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/flann.cpp
FAILED: src/cpp/CMakeFiles/flann.dir/flann/flann.cpp.o
/usr/bin/c++ -DFLANN_EXPORTS -D_FLANN_VERSION=1.9.2 -I/wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -Wall -Wno-unknown-pragmas -Wno-unused-function -MD -MT src/cpp/CMakeFiles/flann.dir/flann/flann.cpp.o -MF src/cpp/CMakeFiles/flann.dir/flann/flann.cpp.o.d -o src/cpp/CMakeFiles/flann.dir/flann/flann.cpp.o -c /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/flann.cpp
In file included from /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/flann.cpp:31:
In file included from /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/flann.h:603:
In file included from /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/flann.hpp:45:
In file included from /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/algorithms/all_indices.h:43:
In file included from /wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/algorithms/autotuned_index.h:36:
/wrkdirs/usr/ports/math/flann/work/flann-1.9.2/src/cpp/flann/nn/index_testing.h:253:11: warning: variable 'p1' set but not used [-Wunused-but-set-variable]
float p1;
^
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/math/flann