[package - 124amd64-quarterly][science/code_saturne] Failed for code_saturne-8.0.0 in configure
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Date: Sun, 08 Oct 2023 14:48:23 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: thierry@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy2/data/124amd64-quarterly/2195304f98e0/logs/code_saturne-8.0.0.log
Build URL: https://pkg-status.freebsd.org/beefy2/build.html?mastername=124amd64-quarterly&build=2195304f98e0
Log:
=>> Building science/code_saturne
build started at Sun Oct 8 14:44:39 UTC 2023
port directory: /usr/ports/science/code_saturne
package name: code_saturne-8.0.0
building for: FreeBSD 124amd64-quarterly-job-10 12.4-RELEASE-p5 FreeBSD 12.4-RELEASE-p5 amd64
maintained by: thierry@FreeBSD.org
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===> The following configuration options are available for code_saturne-8.0.0:
DOCS=on: Build and/or install documentation
====> Support of METIS: you can only select none or one of them
METIS=on: Support of METIS
PARMETIS=off: Support of ParMETIS
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
thierry@FreeBSD.org
--End MAINTAINER--
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> code_saturne-8.0.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.7.pkg
[124amd64-quarterly-job-10] Installing pkg-1.20.7...
[124amd64-quarterly-job-10] Extracting pkg-1.20.7: .......... done
===> code_saturne-8.0.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of code_saturne-8.0.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
=> code_saturne-8.0.0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://www.code-saturne.org/releases/code_saturne-8.0.0.tar.gz
code_saturne-8.0.0.tar.gz 58 MB 11 MBps 05s
===> Fetching all distfiles required by code_saturne-8.0.0 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by code_saturne-8.0.0 for building
=> SHA256 Checksum OK for code_saturne-8.0.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by code_saturne-8.0.0 for building
===> Extracting for code_saturne-8.0.0
=> SHA256 Checksum OK for code_saturne-8.0.0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for code_saturne-8.0.0
===> Applying FreeBSD patches for code_saturne-8.0.0 from /usr/ports/science/code_saturne/files
===========================================================================
=======================<phase: build-depends >============================
===> code_saturne-8.0.0 depends on package: py39-mpi4py>0 - not found
===> Installing existing package /packages/All/py39-mpi4py-3.1.4_2.pkg
[124amd64-quarterly-job-10] Installing py39-mpi4py-3.1.4_2...
[124amd64-quarterly-job-10] `-- Installing openmpi-4.1.5_1...
[124amd64-quarterly-job-10] | `-- Installing gcc12-12.2.0_6...
[124amd64-quarterly-job-10] | | `-- Installing binutils-2.40_4,1...
[124amd64-quarterly-job-10] | | `-- Installing gettext-runtime-0.22_1...
<snip>
--
===> NOTICE:
The mpich port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> code_saturne-8.0.0 depends on shared library: libpetsc.so - found (/usr/local/lib/libpetsc.so)
===> Returning to build of code_saturne-8.0.0
===> code_saturne-8.0.0 depends on shared library: libHYPRE.so - not found
===> Installing existing package /packages/All/hypre-2.29.0_1.pkg
[124amd64-quarterly-job-10] Installing hypre-2.29.0_1...
[124amd64-quarterly-job-10] Extracting hypre-2.29.0_1: .......... done
===> code_saturne-8.0.0 depends on shared library: libHYPRE.so - found (/usr/local/lib/libHYPRE.so)
===> Returning to build of code_saturne-8.0.0
===> code_saturne-8.0.0 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so)
===> code_saturne-8.0.0 depends on shared library: libscotch.so - not found
===> Installing existing package /packages/All/scotch-6.0.4.a7_4.pkg
[124amd64-quarterly-job-10] Installing scotch-6.0.4.a7_4...
[124amd64-quarterly-job-10] Extracting scotch-6.0.4.a7_4: .......... done
===> code_saturne-8.0.0 depends on shared library: libscotch.so - found (/usr/local/lib/libscotch.so)
===> Returning to build of code_saturne-8.0.0
===> code_saturne-8.0.0 depends on shared library: libsmumps.so - not found
===> Installing existing package /packages/All/mumps-edf-5.1.2.a7_4.pkg
[124amd64-quarterly-job-10] Installing mumps-edf-5.1.2.a7_4...
[124amd64-quarterly-job-10] Extracting mumps-edf-5.1.2.a7_4: .......... done
===> code_saturne-8.0.0 depends on shared library: libsmumps.so - found (/usr/local/lib/libsmumps.so)
===> Returning to build of code_saturne-8.0.0
===> code_saturne-8.0.0 depends on shared library: libcblas.so - not found
===> Installing existing package /packages/All/cblas-3.11.0_1.pkg
[124amd64-quarterly-job-10] Installing cblas-3.11.0_1...
[124amd64-quarterly-job-10] Extracting cblas-3.11.0_1: .......... done
===> code_saturne-8.0.0 depends on shared library: libcblas.so - found (/usr/local/lib/libcblas.so)
===> Returning to build of code_saturne-8.0.0
===> code_saturne-8.0.0 depends on shared library: libmedC.so - not found
===> Installing existing package /packages/All/fr-med-4.0.0_3.pkg
[124amd64-quarterly-job-10] Installing fr-med-4.0.0_3...
[124amd64-quarterly-job-10] `-- Installing hdf5-110-1.10.10...
[124amd64-quarterly-job-10] `-- Extracting hdf5-110-1.10.10: .......... done
[124amd64-quarterly-job-10] Extracting fr-med-4.0.0_3: .......... done
===> code_saturne-8.0.0 depends on shared library: libmedC.so - found (/usr/local/lib/libmedC.so)
===> Returning to build of code_saturne-8.0.0
===> code_saturne-8.0.0 depends on shared library: libmetis.so - found (/usr/local/lib/libmetis.so)
===> code_saturne-8.0.0 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so)
===> code_saturne-8.0.0 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so)
===> code_saturne-8.0.0 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so)
===> code_saturne-8.0.0 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so)
===> code_saturne-8.0.0 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so)
===========================================================================
=======================<phase: configure >============================
===> Configuring for code_saturne-8.0.0
/usr/bin/sed -i.bak -e 's|/usr/bin/env python|/usr/local/bin/python3.9|' /wrkdirs/usr/ports/science/code_saturne/work/code_saturne-8.0.0/Makefile.am
/usr/bin/sed -i.bak -e 's|make -s|gmake -s|' /wrkdirs/usr/ports/science/code_saturne/work/code_saturne-8.0.0/m4/cs_petsc.m4
configure: loading site script /usr/ports/Templates/config.site
checking build system type... amd64-portbld-freebsd12.4
checking host system type... amd64-portbld-freebsd12.4
checking target system type... amd64-portbld-freebsd12.4
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... (cached) /bin/mkdir -p
checking for gawk... (cached) /usr/bin/awk
checking whether gmake sets $(MAKE)... yes
checking whether gmake supports nested variables... yes
checking how to create a pax tar archive... gnutar
checking whether to enable maintainer-specific portions of Makefiles... no
checking whether gmake supports nested variables... (cached) yes
configure: WARNING: no supported environment module commmand detected
checking for gcc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether cc accepts -g... yes
checking for cc option to enable C11 features... none needed
checking whether cc understands -c and -o together... yes
checking whether gmake supports the include directive... yes (GNU style)
checking dependency style of cc... gcc3
checking whether the compiler supports GNU C++... yes
checking whether c++ accepts -g... yes
checking for c++ option to enable C++11 features... none needed
checking dependency style of c++... gcc3
checking whether the compiler supports GNU Fortran... yes
checking whether gfortran12 accepts -g... yes
checking whether ln -s works... yes
checking for ranlib... /usr/local/bin/ranlib
checking for a sed that does not truncate output... (cached) /usr/local/bin/gsed
checking the archiver (/usr/local/bin/ar) interface... ar
configure: sourcing config/cs_auto_flags.sh (test for known compilers)
compiler 'cc' is clang
compiler 'c++' is clang
compiler 'gfortran12' is GNU gfortran-12.2.0
configure: WARNING: Not sure how to build shared lib for freebsd12.4; assuming Linux-like
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for stdio.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for strings.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for unistd.h... (cached) yes
checking for size_t... (cached) yes
checking for pid_t... (cached) yes
checking for _Bool... (cached) yes
checking for stdbool.h that conforms to C99... (cached) yes
checking for long long... (cached) yes
checking for unsigned long long... (cached) yes
checking for int32_t... (cached) yes
checking for int64_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking for ptrdiff_t... (cached) yes
checking size of void *... 8
checking size of short... 2
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of float... 4
checking size of double... 8
checking how to get verbose linking output from gfortran12... -v
checking for Fortran libraries of gfortran12... -L/usr/local/lib -L/usr/local/lib/gcc12 -L/usr/local/bin -L/usr/local/lib/gcc12/gcc/x86_64-portbld-freebsd12.4/12.2.0 -L/usr/local/lib/gcc12/gcc/x86_64-portbld-freebsd12.4/12.2.0/../../../../../x86_64-portbld-freebsd12.4/lib -L/usr/local/lib/gcc12/gcc/x86_64-portbld-freebsd12.4/12.2.0/../../.. -lgfortran -lm -lssp_nonshared -lquadmath
checking for OpenMP (C)... yes
checking for OpenMP (Fortran)... no
checking whether /usr/local/bin/python3.9 version is >= "3.4"... yes
checking for /usr/local/bin/python3.9 version... 3.9
checking for /usr/local/bin/python3.9 platform... freebsd12
checking for GNU default /usr/local/bin/python3.9 prefix... ${prefix}
checking for GNU default /usr/local/bin/python3.9 exec_prefix... ${exec_prefix}
checking for /usr/local/bin/python3.9 script directory (pythondir)... ${PYTHON_PREFIX}/lib/python3.9/site-packages
checking for /usr/local/bin/python3.9 extension module directory (pyexecdir)... ${PYTHON_EXEC_PREFIX}/lib/python3.9/site-packages
checking for dlopen... dlopen
checking for legacy C BLAS... yes
checking how to run the C preprocessor... cpp
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for MPI (MPI compiler wrapper test)... no
checking for mpi.h... yes
checking for MPICH-3 or MPICH2... yes
checking for MPI I/O... yes
checking for MPI in place... yes
checking for MPI nonblocking barrier... yes
checking for ptscotch.h... yes
checking for PT-SCOTCH... yes
checking for hdf5.h... yes
checking for H5Fopen in -lhdf5-shared... no
checking for H5Fopen in -lhdf5-static... no
checking for H5Fopen in -lhdf5... yes
CGNS >= 3.1.0 headers found
checking for cg_coord_partial_write in -lcgns... yes
MED >= 3.0 headers found
configure: WARNING: no MED file MPI support
CCMIO headers not found
checking for freesteam/steam.h... no
checking for CoolProp library)... no
checking for Zlib... yes
checking size of z_off_t... 8
configure: WARNING: no MEDCoupling file support
configure: MUMPS_CPP=-I/usr/local/include
configure: MUMPS_LD=-L/usr/local/lib
configure: MUMPS_LIBS=-ldmumps -lsmumps -lmumps_common -lmpiseq -llapack -lgfortran -lm
configure: MUMPSRUNPATH=-R/usr/local/lib
ld-elf.so.1: Shared object "libreadline.so.8" not found, required by "bash"
gmake[1]: *** [/wrkdirs/usr/ports/science/code_saturne/work/code_saturne-8.0.0/build-aux/petsc-variables.makefile:4: getincludedirs] Error 1
ld-elf.so.1: Shared object "libreadline.so.8" not found, required by "bash"
gmake[1]: *** [/wrkdirs/usr/ports/science/code_saturne/work/code_saturne-8.0.0/build-aux/petsc-variables.makefile:7: getlinklibs] Error 1
checking for PETSc library... configure: WARNING: no PETSc support
no
checking for HYPRE... yes
checking for pdflatex... /usr/local/bin/pdflatex
checking for bibtex... /usr/local/bin/bibtex
checking for makeindex... /usr/local/bin/makeindex
checking for doxygen... /usr/local/bin/doxygen
checking for dot... /usr/local/bin/dot
checking for sphinx-build... /wrkdirs/usr/ports/science/code_saturne/work/.bin/sphinx-build
checking for PyQt5 version >= 5.0... ld-elf.so.1: Shared object "libpython3.9.so.1.0" not found, required by "python3.9"
no
checking for PyQt4 version >= 4.5... ld-elf.so.1: Shared object "libpython3.9.so.1.0" not found, required by "python3.9"
no
configure: error: in `/wrkdirs/usr/ports/science/code_saturne/work/code_saturne-8.0.0':
configure: error: cannot find PyQt5 support (>= 5.0) or PyQt4 support (>= 4.5), Graphical User Interface cannot be installed
See `config.log' for more details
===> Script "configure" failed unexpectedly.
Please report the problem to thierry@FreeBSD.org [maintainer] and attach the
"/wrkdirs/usr/ports/science/code_saturne/work/code_saturne-8.0.0/config.log"
including the output of the failure of your make command. Also, it might be
a good idea to provide an overview of all packages installed on your system
(e.g. a /usr/local/sbin/pkg-static info -g -Ea).
*** Error code 1
Stop.
make: stopped in /usr/ports/science/code_saturne