From nobody Sun Oct 01 08:32:09 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Ryy4V2ysXz4wTsJ for ; Sun, 1 Oct 2023 08:32:10 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Ryy4V1P1gz3TYH for ; Sun, 1 Oct 2023 08:32:10 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1696149130; a=rsa-sha256; cv=none; b=huiY/Wss6vZjar6gPXs8LAQfQom0xdMzYpmwjs/ilA2t5+mSm8x1pULxjP2DV7mQJOVaYJ W+odBBaf0YVAPkft1CRarhXsZw+PPN3SXbBp3ZBZmP5usevfKV3maguLiXG67t3Dsg886s 6PraA1ld3hPuyhjT8bSX6D0LZTcgPBl20S42UBzekVk8GoRRofaJreJOSYPfkX8a3Aozz8 OIyYZ7Y3rzkxyxjOqNIV5nAymVr1uLAPAw5VLVhT4/slxVyC75Sj3tQzcbnete/IfKXvc9 xcJ+oDn2L4sKOsfCnMbh5fbUsoz9q83/cD2bm10JjAWnVAvTKHPgZgAQM7/nsw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1696149130; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=N1GZVJGA5opnSaXxTsgJHVFk8eRkWF4dPPLOE4Y+2bM=; b=Utfh6sZJuw7se5mADq7nwUr1PKiI7wnMB0gq5opfFXTQDqm08WNRl8Qb08/7n/j63D/div CUzBY2HFVF0Y41aZ3BcWg/ysXdNwYsMIsOHsH8HP8d+1KcKiSernZfKDgA4I0nn+jk0qZ1 k6Yqt/i2ReBI112wV/Ad+/W6n3KH1qk5+OzOorosUXmKKw6PsS9PQZ9LzZzyxSlKfHl1WD 69IgMUWiKU04scgo2PSii5n4KFBXn+TUfZyFvIyMzwlZdODkhYfZrQVPoLBjLJLFOV79cD Am5rI9jAst0djr651IoE1Jg0nXvdTpJpEg/nDZIy5ITE6D+c7cVDifNQSM/Khg== Received: from ampere3.nyi.freebsd.org (ampere3.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:26]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4Ryy4V040Dz7sD for ; Sun, 1 Oct 2023 08:32:09 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 3195 by ampere3.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on ampere3.nyi.freebsd.org); Sun, 01 Oct 2023 08:32:09 +0000 To: yuri@FreeBSD.org Subject: [package - 132arm64-default][biology/seqwish] Failed for seqwish-0.7.9 in build Cc: pkg-fallout@FreeBSD.org Date: Sun, 01 Oct 2023 08:32:09 +0000 Message-Id: <65192e89.3195.30e44c27@ampere3.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere3/data/132arm64-default/e4b8bfc7570d/logs/seqwish-0.7.9.log Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=132arm64-default&build=e4b8bfc7570d Log: =>> Building biology/seqwish build started at Sun Oct 1 08:29:59 UTC 2023 port directory: /usr/ports/biology/seqwish package name: seqwish-0.7.9 building for: FreeBSD 132arm64-default-job-03 13.2-RELEASE-p3 FreeBSD 13.2-RELEASE-p3 arm64 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1500000 Jail OSVERSION: 1302001 Job Id: 03 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p3 UNAME_r=13.2-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/132arm64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/132arm64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=132arm64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/132arm64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for seqwish-0.7.9: OPENMP=on: Parallel processing support via OpenMP ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_ INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seqwish" EXAMPLESDIR="share/examples/seqwish" DATADIR="share/seqwish" WWWDIR="www/seqwish" ETCDIR="etc/seqwish" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seqwish DOCSDIR=/usr/local/share/doc/seqwish EXAMPLESDIR=/usr/local/share/examples/seqwish WWWDIR=/usr/local/www/seqwish ETCDIR=/usr/local/etc/seqwish --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=3 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: aarch64-unknown-freebsd13.2 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: aarch64-unknown-freebsd13.2 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: aarch64-unknown-freebsd13.2 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=aarch64 OPSYS=FreeBSD _OSRELEASE=13.2-RELEASE-p3 OSREL=13.2 OSVERSION=1302001 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License MIT accepted by the user =========================================================================== =================================================== ===> seqwish-0.7.9 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.7.pkg [132arm64-default-job-03] Installing pkg-1.20.7... [132arm64-default-job-03] Extracting pkg-1.20.7: .......... done ===> seqwish-0.7.9 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of seqwish-0.7.9 =========================================================================== =================================================== =========================================================================== =================================================== ===> License MIT accepted by the user ===> Fetching all distfiles required by seqwish-0.7.9 for building =========================================================================== =================================================== ===> License MIT accepted by the user ===> Fetching all distfiles required by seqwish-0.7.9 for building => SHA256 Checksum OK for seqwish-v0.7.9.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License MIT accepted by the user ===> Fetching all distfiles required by seqwish-0.7.9 for building ===> Extracting for seqwish-0.7.9 => SHA256 Checksum OK for seqwish-v0.7.9.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for seqwish-0.7.9 ===> Applying FreeBSD patches for seqwish-0.7.9 from /usr/ports/biology/seqwish/files =========================================================================== =================================================== ===> seqwish-0.7.9 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.26.1_3.pkg [132arm64-default-job-03] Installing cmake-core-3.26.1_3... [132arm64-default-job-03] `-- Installing expat-2.5.0... [132arm64-default-job-03] `-- Extracting expat-2.5.0: .......... done [132arm64-default-job-03] `-- Installing jsoncpp-1.9.5... [132arm64-default-job-03] `-- Extracting jsoncpp-1.9.5: .......... done [132arm64-default-job-03] `-- Installing libuv-1.46.0... [132arm64-default-job-03] `-- Extracting libuv-1.46.0: .......... done [132arm64-default-job-03] `-- Installing rhash-1.4.4... [132arm64-default-job-03] | `-- Installing gettext-runtime-0.22_1... [132arm64-default-job-03] | | `-- Installing indexinfo-0.3.1... [ 79%] No install step for 'mio' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-install --- CMakeFiles/mio-complete --- [ 79%] Completed 'mio' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/mio-complete --- CMakeFiles/sdsl-lite.dir/all --- -- Looking for string.h - found -- Looking for strings.h --- CMakeFiles/mio.dir/all --- /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-done [ 79%] Built target mio --- CMakeFiles/sdsl-lite.dir/all --- -- Looking for strings.h - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Performing Test HAVE_INLINE -- Performing Test HAVE_INLINE - Success -- Performing Test HAVE___INLINE -- Performing Test HAVE___INLINE - Success -- Performing Test HAVE___INLINE__ -- Performing Test HAVE___INLINE__ - Success -- Performing Test HAVE___DECLSPEC_DLLEXPORT_ -- Performing Test HAVE___DECLSPEC_DLLEXPORT_ - Failed -- Performing Test HAVE___DECLSPEC_DLLIMPORT_ -- Performing Test HAVE___DECLSPEC_DLLIMPORT_ - Failed -- Check size of uint8_t -- Check size of uint8_t - done -- Check size of int32_t -- Check size of int32_t - done -- Looking for PRId32 -- Looking for PRId32 - found -- Check size of int64_t -- Check size of int64_t - done -- Looking for PRId64 -- Looking for PRId64 - found CMake Warning (dev) at external/googletest/googletest/CMakeLists.txt:47 (project): Policy CMP0048 is not set: project() command manages VERSION variables. Run "cmake --help-policy CMP0048" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The following variable(s) would be set to empty: PROJECT_VERSION PROJECT_VERSION_MAJOR PROJECT_VERSION_MINOR PROJECT_VERSION_PATCH This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at external/googletest/googletest/CMakeLists.txt:48 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include cstdio -- Looking for C++ include cstdio - found -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (16.3s) -- Generating done (0.4s) -- Build files have been written to: /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build cd /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-configure --- sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-build --- [ 80%] Performing build step for 'sdsl-lite' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build && /usr/bin/make [ 0%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/divsufsort.o [ 0%] Building CXX object external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o [ 0%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/divsufsort.o [ 0%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/sssort.o [ 10%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/sssort.o [ 10%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/trsort.o [ 20%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/trsort.o [ 20%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/utils.o [ 20%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/utils.o [ 20%] Linking C static library libdivsufsort64.a [ 20%] Linking C static library libdivsufsort.a [ 20%] Built target divsufsort64 [ 20%] Built target divsufsort [ 20%] Building CXX object lib/CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o [ 20%] Building CXX object lib/CMakeFiles/sdsl.dir/bits.cpp.o [ 20%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o [ 30%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o [ 30%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o [ 30%] Building CXX object lib/CMakeFiles/sdsl.dir/config.cpp.o [ 30%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_config.cpp.o [ 40%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_isa.cpp.o [ 40%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp.cpp.o [ 40%] Linking CXX static library libgtest.a [ 40%] Built target gtest [ 40%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/sdsl-lite/lib/construct_lcp.cpp:6: /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/construct_lcp.hpp:130:53: warning: instantiation of variable 'sdsl::key_text_trait<'\b'>::KEY_TEXT' required here, but no definition is available [-Wundefined-var-template] const char* KEY_TEXT = key_text_trait::KEY_TEXT; ^ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/sdsl-lite/lib/construct_lcp.cpp:209:25: note: in instantiation of function template specialization 'sdsl::construct_lcp_PHI<(unsigned char)'\b'>' requested here construct_lcp_PHI<8>(config); ^ /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/config.hpp:51:24: note: forward declaration of template entity is here static const char* KEY_TEXT; ^ /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/construct_lcp.hpp:130:53: note: add an explicit instantiation declaration to suppress this warning if 'sdsl::key_text_trait<'\b'>::KEY_TEXT' is explicitly instantiated in another translation unit const char* KEY_TEXT = key_text_trait::KEY_TEXT; ^ [ 40%] Building CXX object external/googletest/googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o [ 40%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa.cpp.o [ 50%] Linking CXX static library libgtest_main.a [ 50%] Built target gtest_main [ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa_se.cpp.o 1 warning generated. [ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o [ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/io.cpp.o [ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o [ 70%] Building CXX object lib/CMakeFiles/sdsl.dir/louds_tree.cpp.o [ 70%] Building CXX object lib/CMakeFiles/sdsl.dir/memory_management.cpp.o [ 70%] Building CXX object lib/CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o [ 70%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_filebuf.cpp.o [ 80%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_fs.cpp.o [ 80%] Building CXX object lib/CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o [ 80%] Building CXX object lib/CMakeFiles/sdsl.dir/sd_vector.cpp.o [ 80%] Building CXX object lib/CMakeFiles/sdsl.dir/sfstream.cpp.o [ 90%] Building CXX object lib/CMakeFiles/sdsl.dir/structure_tree.cpp.o [ 90%] Building CXX object lib/CMakeFiles/sdsl.dir/uint128_t.cpp.o [ 90%] Building CXX object lib/CMakeFiles/sdsl.dir/uint256_t.cpp.o [ 90%] Building CXX object lib/CMakeFiles/sdsl.dir/util.cpp.o [100%] Building CXX object lib/CMakeFiles/sdsl.dir/wt_helper.cpp.o [100%] Linking CXX static library libsdsl.a [100%] Built target sdsl cd /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-build --- sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-install --- [ 81%] No install step for 'sdsl-lite' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-install --- CMakeFiles/sdsl-lite-complete --- [ 82%] Completed 'sdsl-lite' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/sdsl-lite-complete /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-done [ 82%] Built target sdsl-lite --- CMakeFiles/seqwish.dir/all --- /usr/bin/make -f CMakeFiles/seqwish.dir/build.make CMakeFiles/seqwish.dir/depend --- CMakeFiles/seqwish.dir/depend --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/seqwish.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/seqwish.dir/build.make CMakeFiles/seqwish.dir/build --- CMakeFiles/seqwish.dir/src/utils.cpp.o 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CMakeFiles/seqwish.dir/src/main.cpp.o /usr/bin/c++ -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/external/libdivsufsort/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/args -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/gzip_reader -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/ips4o -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/iitii/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/BBHash -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomicbitvector/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomic_queue/include/atomic_queue -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map -I/wrkdirs/usr/ports/biol ogy/seqwish/work/seqwish-v0.7.9/deps/paryfor -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/deps/mio/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp -Ofast -march=native -DNDEBUG -std=gnu++14 -pthread -MD -MT CMakeFiles/seqwish.dir/src/main.cpp.o -MF CMakeFiles/seqwish.dir/src/main.cpp.o.d -o CMakeFiles/seqwish.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/main.cpp c++: error: the clang compiler does not support '-march=native' *** [CMakeFiles/seqwish.dir/src/main.cpp.o] Error code 1 make[3]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build 3 errors make[3]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build *** [CMakeFiles/seqwish.dir/all] Error code 2 make[2]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build 1 error make[2]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build *** [all] Error code 2 make[1]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build 1 error make[1]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/seqwish