[package - main-i386-default][biology/kmcp] Failed for kmcp-0.9.1_3 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Fri, 24 Mar 2023 08:27:52 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/beefy17/data/main-i386-default/p7589f82bff48_s700acdc7b5/logs/kmcp-0.9.1_3.log
Build URL:      https://pkg-status.freebsd.org/beefy17/build.html?mastername=main-i386-default&build=p7589f82bff48_s700acdc7b5
Log:

=>> Building biology/kmcp
build started at Fri Mar 24 08:27:12 UTC 2023
port directory: /usr/ports/biology/kmcp
package name: kmcp-0.9.1_3
building for: FreeBSD main-i386-default-job-02 14.0-CURRENT FreeBSD 14.0-CURRENT 1400083 i386
maintained by: yuri@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400073
Jail OSVERSION: 1400083
Job Id: 02




!!! Jail is newer than host. (Jail: 1400083, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/sh
UNAME_p=i386
UNAME_m=i386
OSVERSION=1400083
UNAME_v=FreeBSD 14.0-CURRENT 1400083
UNAME_r=14.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-23-ga7f8d188
MASTERMNT=/usr/local/poudriere/data/.m/main-i386-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=main-i386-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/main-i386-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/kmcp/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/kmcp/work  XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/kmcp/work/.cache  HOME=/wrkdirs/usr/ports/biology/kmcp/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/kmcp/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/kmcp/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/kmcp/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/kmcp/work  XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/kmcp/work/.cache  HOME=/wrkdirs/usr/ports/biology/kmcp/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/kmcp/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/kmcp/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD
 _INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/kmcp"  EXAMPLESDIR="share/examples/kmcp"  DATADIR="share/kmcp"  WWWDIR="www/kmcp"  ETCDIR="etc/kmcp"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/kmcp DOCSDIR=/usr/local/share/doc/kmcp EXAMPLESDIR=/usr/local/share/examples/kmcp  WWWDIR=/usr/local/www/kmcp ETCDIR=/usr/local/etc/kmcp
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6) Target: i386-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6) Target: i386-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_53255a77=yes
CC_OUTPUT_921dbbb2_911cfe02=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
CC_OUTPUT_921dbbb2_af59ad06=yes
CC_OUTPUT_921dbbb2_a15f3fcf=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 15.0.7 (https://github.com/llvm/llvm-project.git llvmorg-15.0.7-0-g8dfdcc7b7bf6) Target: i386-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=i386
OPSYS=FreeBSD
_OSRELEASE=14.0-CURRENT
OSREL=14.0
OSVERSION=1400083
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  524288
stack size              (kbytes, -s)  65536
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   kmcp-0.9.1_3 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.19.1_1.pkg
[main-i386-default-job-02] Installing pkg-1.19.1_1...
[main-i386-default-job-02] Extracting pkg-1.19.1_1: .......... done
===>   kmcp-0.9.1_3 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of kmcp-0.9.1_3
===========================================================================
=======================<phase: fetch-depends  >============================
===>   kmcp-0.9.1_3 depends on file: /usr/local/bin/go120 - not found
===>   Installing existing package /packages/All/go120-1.20.2.pkg
[main-i386-default-job-02] Installing go120-1.20.2...
[main-i386-default-job-02] Extracting go120-1.20.2: .......... done
===>   kmcp-0.9.1_3 depends on file: /usr/local/bin/go120 - found
===>   Returning to build of kmcp-0.9.1_3
===>   kmcp-0.9.1_3 depends on package: ca_root_nss>0 - not found
===>   Installing existing package /packages/All/ca_root_nss-3.88.1.pkg
[main-i386-default-job-02] Installing ca_root_nss-3.88.1...
[main-i386-default-job-02] Extracting ca_root_nss-3.88.1: .......... done
=====
Message from ca_root_nss-3.88.1:

--
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.


This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

<snip>
internal/cpu
internal/abi
internal/coverage/rtcov
internal/goexperiment
internal/bytealg
internal/goos
runtime/internal/atomic
runtime/internal/math
runtime/internal/sys
internal/race
sync/atomic
runtime
unicode
unicode/utf8
math/bits
encoding
math
internal/itoa
unicode/utf16
crypto/internal/alias
crypto/internal/boring/sig
github.com/klauspost/compress
github.com/ulikunitz/xz/internal/hash
container/list
vendor/golang.org/x/crypto/cryptobyte/asn1
internal/nettrace
vendor/golang.org/x/crypto/internal/alias
github.com/shenwei356/pand
# github.com/shenwei356/pand
vendor/github.com/shenwei356/pand/dispatch.go:19:20: undefined: andInplaceFuncs
vendor/github.com/shenwei356/pand/dispatch.go:29:20: undefined: andFuncs
github.com/shenwei356/util/math
github.com/rivo/uniseg
github.com/VividCortex/ewma
github.com/vbauerster/mpb/v5/internal
internal/reflectlite
sync
internal/testlog
internal/godebug
math/rand
crypto/subtle
internal/singleflight
internal/intern
errors
runtime/cgo
io
bytes
strings
bufio
sort
strconv
container/heap
internal/oserror
syscall
reflect
internal/syscall/unix
time
internal/poll
internal/safefilepath
internal/syscall/execenv
path
io/fs
os
encoding/binary
encoding/base64
internal/fmtsort
regexp/syntax
fmt
regexp
encoding/json
math/big
golang.org/x/sys/unix
github.com/dustin/go-humanize
github.com/edsrzf/mmap-go
path/filepath
compress/flate
github.com/iafan/cwalk
hash
hash/crc32
github.com/mattn/go-isatty
github.com/mattn/go-colorable
context
github.com/klauspost/compress/flate
os/exec
github.com/mitchellh/go-homedir
github.com/pkg/errors
github.com/shenwei356/util/byteutil
github.com/shenwei356/bio/seq
crypto
crypto/cipher
crypto/internal/boring
crypto/internal/randutil
github.com/klauspost/pgzip
crypto/rand
encoding/hex
github.com/klauspost/compress/fse
github.com/klauspost/compress/internal/snapref
github.com/klauspost/compress/zstd/internal/xxhash
github.com/klauspost/compress/huff0
log
runtime/debug
crypto/sha256
github.com/ulikunitz/xz/internal/xlog
github.com/klauspost/compress/zstd
github.com/ulikunitz/xz/lzma
hash/crc64
github.com/ulikunitz/xz
compress/gzip
crypto/aes
crypto/des
crypto/internal/edwards25519/field
crypto/internal/nistec/fiat
crypto/internal/bigmod
crypto/internal/boring/bbig
crypto/sha512
encoding/asn1
vendor/golang.org/x/crypto/cryptobyte
crypto/internal/edwards25519
crypto/internal/nistec
crypto/ed25519
crypto/hmac
crypto/md5
crypto/rc4
crypto/rsa
crypto/ecdh
crypto/elliptic
crypto/sha1
crypto/dsa
crypto/x509/pkix
crypto/ecdsa
encoding/pem
vendor/golang.org/x/net/dns/dnsmessage
vendor/golang.org/x/net/route
net/netip
net/url
net
vendor/golang.org/x/crypto/chacha20
vendor/golang.org/x/crypto/internal/poly1305
vendor/golang.org/x/crypto/chacha20poly1305
vendor/golang.org/x/crypto/hkdf
vendor/golang.org/x/text/transform
vendor/golang.org/x/text/unicode/bidi
vendor/golang.org/x/text/secure/bidirule
vendor/golang.org/x/text/unicode/norm
vendor/golang.org/x/net/idna
vendor/golang.org/x/net/http2/hpack
mime
mime/quotedprintable
net/http/internal
net/http/internal/ascii
os/user
github.com/shenwei356/kmers
github.com/will-rowe/nthash
github.com/zeebo/wyhash
crypto/x509
net/textproto
vendor/golang.org/x/net/http/httpguts
vendor/golang.org/x/net/http/httpproxy
mime/multipart
github.com/shenwei356/bio/sketches
github.com/twotwotwo/sorts
github.com/twotwotwo/sorts/sortutil
crypto/tls
log/syslog
github.com/shenwei356/go-logging
github.com/shenwei356/kmcp/kmcp/cmd/index
golang.org/x/sys/cpu
github.com/shenwei356/pospop
github.com/shenwei356/unik/v5
github.com/shenwei356/util/bytesize
github.com/shenwei356/natsort
github.com/shenwei356/util/stringutil
encoding/csv
flag
github.com/spf13/pflag
net/http/httptrace
net/http
text/template/parse
text/template
github.com/spf13/cobra
github.com/shenwei356/util/pathutil
github.com/shenwei356/util/stats
github.com/mattn/go-runewidth
github.com/tatsushid/go-prettytable
github.com/acarl005/stripansi
github.com/vbauerster/mpb/v5/cwriter
github.com/vbauerster/mpb/v5/decor
io/ioutil
github.com/vbauerster/mpb/v5
github.com/zeebo/xxh3
gopkg.in/yaml.v2
github.com/shenwei356/xopen
github.com/shenwei356/bio/taxdump
github.com/shenwei356/bio/seqio/fastx
github.com/shenwei356/breader
github.com/shenwei356/util/cliutil
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/kmcp