[package - 131releng-armv7-quarterly][biology/py-pysam] Failed for py39-pysam-0.20.0 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Tue, 14 Mar 2023 09:27:12 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/ampere1/data/131releng-armv7-quarterly/6384b7208c71/logs/py39-pysam-0.20.0.log
Build URL:      https://pkg-status.freebsd.org/ampere1/build.html?mastername=131releng-armv7-quarterly&build=6384b7208c71
Log:

=>> Building biology/py-pysam
build started at Tue Mar 14 09:25:37 UTC 2023
port directory: /usr/ports/biology/py-pysam
package name: py39-pysam-0.20.0
building for: FreeBSD 131releng-armv7-quarterly-job-05 13.1-RELEASE-p7 FreeBSD 13.1-RELEASE-p7 1301000 arm
maintained by: yuri@FreeBSD.org
Makefile ident: 
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Host OSVERSION: 1400073
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Job Id: 05

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=======================<phase: check-sanity   >============================
===>  License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py39-pysam-0.20.0 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.19.0.pkg
[131releng-armv7-quarterly-job-05] Installing pkg-1.19.0...
[131releng-armv7-quarterly-job-05] Extracting pkg-1.19.0: .......... done
===>   py39-pysam-0.20.0 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py39-pysam-0.20.0
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by py39-pysam-0.20.0 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by py39-pysam-0.20.0 for building
=> SHA256 Checksum OK for pysam-0.20.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by py39-pysam-0.20.0 for building
===>  Extracting for py39-pysam-0.20.0
=> SHA256 Checksum OK for pysam-0.20.0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py39-pysam-0.20.0
===>  Applying FreeBSD patches for py39-pysam-0.20.0 from /usr/ports/biology/py-pysam/files
===========================================================================
=======================<phase: build-depends  >============================
===>   py39-pysam-0.20.0 depends on package: gmake>=4.3 - not found
===>   Installing existing package /packages/All/gmake-4.3_2.pkg
[131releng-armv7-quarterly-job-05] Installing gmake-4.3_2...
[131releng-armv7-quarterly-job-05] `-- Installing gettext-runtime-0.21.1...
[131releng-armv7-quarterly-job-05] |   `-- Installing indexinfo-0.3.1...
[131releng-armv7-quarterly-job-05] |   `-- Extracting indexinfo-0.3.1: .... done
[131releng-armv7-quarterly-job-05] `-- Extracting gettext-runtime-0.21.1: .......... done
[131releng-armv7-quarterly-job-05] Extracting gmake-4.3_2: .......... done
===>   py39-pysam-0.20.0 depends on package: gmake>=4.3 - found
===>   Returning to build of py39-pysam-0.20.0
===>   py39-pysam-0.20.0 depends on executable: cython-3.9 - not found
===>   Installing existing package /packages/All/py39-cython-0.29.32.pkg
[131releng-armv7-quarterly-job-05] Installing py39-cython-0.29.32...
[131releng-armv7-quarterly-job-05] `-- Installing py39-setuptools-63.1.0...
[131releng-armv7-quarterly-job-05] |   `-- Installing python39-3.9.16...
<snip>
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o textutils.o textutils.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o thread_pool.o thread_pool.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o vcf.o vcf.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o vcfutils.o vcfutils.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o cram/cram_codecs.o cram/cram_codecs.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o cram/cram_decode.o cram/cram_decode.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o cram/cram_encode.o cram/cram_encode.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o cram/cram_external.o cram/cram_external.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o cram/cram_index.o cram/cram_index.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o cram/cram_io.o cram/cram_io.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o cram/cram_stats.o cram/cram_stats.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o cram/mFILE.o cram/mFILE.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o cram/open_trace_file.o cram/open_trace_file.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o cram/pooled_alloc.o cram/pooled_alloc.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o cram/string_alloc.o cram/string_alloc.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c
cc -Wall -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  -fvisibility=hidden  -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement  -c -o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr_neon.c
htscodecs/htscodecs/rANS_static32x16pr_neon.c:199:31: warning: implicit declaration of function 'vtrn1q_u32' is invalid in C99 [-Wimplicit-function-declaration]
            uint32x4_t A1_1 = vtrn1q_u32(A_1, B_1);
                              ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:199:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
            uint32x4_t A1_1 = vtrn1q_u32(A_1, B_1);
                       ^      ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:200:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
            uint32x4_t C1_1 = vtrn1q_u32(C_1, D_1);
                       ^      ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:201:31: warning: implicit declaration of function 'vtrn2q_u32' is invalid in C99 [-Wimplicit-function-declaration]
            uint32x4_t A2_1 = vtrn2q_u32(A_1, B_1);
                              ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:201:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
            uint32x4_t A2_1 = vtrn2q_u32(A_1, B_1);
                       ^      ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:202:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
            uint32x4_t C2_1 = vtrn2q_u32(C_1, D_1);
                       ^      ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:206:39: warning: implicit declaration of function 'vtrn1q_u64' is invalid in C99 [-Wimplicit-function-declaration]
            uint32x4_t Xmaxv1=u32_u64(vtrn1q_u64(u64_u32(A1_1),u64_u32(C1_1)));
                                      ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:206:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
            uint32x4_t Xmaxv1=u32_u64(vtrn1q_u64(u64_u32(A1_1),u64_u32(C1_1)));
                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:204:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
                                         ^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
                                                 ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:207:39: warning: implicit declaration of function 'vtrn2q_u64' is invalid in C99 [-Wimplicit-function-declaration]
            uint32x4_t Biasv1=u32_u64(vtrn2q_u64(u64_u32(A1_1),u64_u32(C1_1)));
                                      ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:207:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
            uint32x4_t Biasv1=u32_u64(vtrn2q_u64(u64_u32(A1_1),u64_u32(C1_1)));
                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:204:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
                                         ^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
                                                 ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:208:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
            uint32x4_t RFv1  =u32_u64(vtrn1q_u64(u64_u32(A2_1),u64_u32(C2_1)));
                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:204:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
                                         ^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
                                                 ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:209:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
            uint32x4_t FSv1  =u32_u64(vtrn2q_u64(u64_u32(A2_1),u64_u32(C2_1)));
                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:204:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
                                         ^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
                                                 ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:216:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
            uint32x4_t A1_2 = vtrn1q_u32(A_2, B_2);
                       ^      ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:217:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
            uint32x4_t C1_2 = vtrn1q_u32(C_2, D_2);
                       ^      ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:218:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
            uint32x4_t A2_2 = vtrn2q_u32(A_2, B_2);
                       ^      ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:219:24: error: initializing 'uint32x4_t' (vector of 4 'uint32_t' values) with an expression of incompatible type 'int'
            uint32x4_t C2_2 = vtrn2q_u32(C_2, D_2);
                       ^      ~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:221:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
            uint32x4_t Xmaxv2=u32_u64(vtrn1q_u64(u64_u32(A1_2),u64_u32(C1_2)));
                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:204:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
                                         ^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
                                                 ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:222:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
            uint32x4_t Biasv2=u32_u64(vtrn2q_u64(u64_u32(A1_2),u64_u32(C1_2)));
                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:204:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
                                         ^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
                                                 ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:223:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
            uint32x4_t RFv2  =u32_u64(vtrn1q_u64(u64_u32(A2_2),u64_u32(C2_2)));
                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:204:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
                                         ^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
                                                 ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:224:31: error: passing 'int' to parameter of incompatible type 'uint64x2_t' (vector of 2 'uint64_t' values)
            uint32x4_t FSv2  =u32_u64(vtrn2q_u64(u64_u32(A2_2),u64_u32(C2_2)));
                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:204:42: note: expanded from macro 'u32_u64'
#define u32_u64(x) vreinterpretq_u32_u64((x))
                                         ^~~
/usr/lib/clang/13.0.0/include/arm_neon.h:32841:50: note: passing argument to parameter '__p0' here
__ai uint32x4_t vreinterpretq_u32_u64(uint64x2_t __p0) {
                                                 ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:231:31: warning: implicit declaration of function 'vaddvq_u32' is invalid in C99 [-Wimplicit-function-declaration]
            uint32_t imask1 = vaddvq_u32(vandq_u32(Cv1, bit));
                              ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:236:21: warning: implicit declaration of function 'vqtbl1_u8' is invalid in C99 [-Wimplicit-function-declaration]
            norm1 = vqtbl1_u8(vreinterpretq_u8_u32(Rv1),vtab[imask1]);
                    ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:236:19: error: assigning to 'uint8x8_t' (vector of 8 'uint8_t' values) from incompatible type 'int'
            norm1 = vqtbl1_u8(vreinterpretq_u8_u32(Rv1),vtab[imask1]);
                  ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:237:19: error: assigning to 'uint8x8_t' (vector of 8 'uint8_t' values) from incompatible type 'int'
            norm2 = vqtbl1_u8(vreinterpretq_u8_u32(Rv2),vtab[imask2]);
                  ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
htscodecs/htscodecs/rANS_static32x16pr_neon.c:263:31: warning: implicit declaration of function 'vmull_high_u32' is invalid in C99 [-Wimplicit-function-declaration]
            uint64x2_t qvh1 = vmull_high_u32(Rv1, RFv1);
                              ^
htscodecs/htscodecs/rANS_static32x16pr_neon.c:263:24: error: initializing 'uint64x2_t' (vector of 2 'uint64_t' values) with an expression of incompatible type 'int'
            uint64x2_t qvh1 = vmull_high_u32(Rv1, RFv1);
                       ^      ~~~~~~~~~~~~~~~~~~~~~~~~~
fatal error: too many errors emitted, stopping now [-ferror-limit=]
7 warnings and 20 errors generated.
make[1]: *** [Makefile:173: htscodecs/htscodecs/rANS_static32x16pr_neon.o] Error 1
make[1]: Leaving directory '/wrkdirs/usr/ports/biology/py-pysam/work-py39/pysam-0.20.0/htslib'
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "setup.py", line 631, in <module>
    dist = setup(**metadata)
  File "/usr/local/lib/python3.9/site-packages/setuptools/__init__.py", line 87, in setup
    return distutils.core.setup(**attrs)
  File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 177, in setup
    return run_commands(dist)
  File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 193, in run_commands
    dist.run_commands()
  File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 968, in run_commands
    self.run_command(cmd)
  File "/usr/local/lib/python3.9/site-packages/setuptools/dist.py", line 1217, in run_command
    super().run_command(command)
  File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 987, in run_command
    cmd_obj.run()
  File "setup.py", line 258, in run
    build.run(self)
  File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/command/build.py", line 131, in run
    self.run_command(cmd_name)
  File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 317, in run_command
    self.distribution.run_command(command)
  File "/usr/local/lib/python3.9/site-packages/setuptools/dist.py", line 1217, in run_command
    super().run_command(command)
  File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 987, in run_command
    cmd_obj.run()
  File "/usr/local/lib/python3.9/site-packages/Cython/Distutils/old_build_ext.py", line 186, in run
    _build_ext.build_ext.run(self)
  File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 339, in run
    self.build_extensions()
  File "/usr/local/lib/python3.9/site-packages/Cython/Distutils/old_build_ext.py", line 195, in build_extensions
    _build_ext.build_ext.build_extensions(self)
  File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 459, in build_extensions
    self._build_extensions_serial()
  File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 485, in _build_extensions_serial
    self.build_extension(ext)
  File "/wrkdirs/usr/ports/biology/py-pysam/work-py39/pysam-0.20.0/cy_build.py", line 88, in build_extension
    ext._prebuild_func(ext, self.force)
  File "setup.py", line 516, in prebuild_libchtslib
    run_make(["ALL_CPPFLAGS=-I. " + args + " $(CPPFLAGS)", "lib-static"])
  File "setup.py", line 75, in run_make
    subprocess.check_call([os.environ.get("MAKE", "make")] + targets)
  File "/usr/local/lib/python3.9/subprocess.py", line 373, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['make', 'ALL_CPPFLAGS=-I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement $(CPPFLAGS)', 'lib-static']' returned non-zero exit status 2.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/py-pysam