From nobody Fri Jun 30 18:17:52 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Qt3TD5W1qz4kSxw for ; Fri, 30 Jun 2023 18:17:52 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Qt3TD32hzz48lc for ; Fri, 30 Jun 2023 18:17:52 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1688149072; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=bZyMeOfAO0lpGRPP5S6DSFVBWoAz0zmgjh3/f2W5rdA=; b=lTv8p7wpBkpvChM7lHELvTK+YY5dGkKn+OLWwKoUYM6tC64y9tnQQSZ+DBq3tNklOBCopK Gr9mKoe1cSQI/eZKI2YagJkc45di5YhdJOoBrQCwhrY0nvKhKUvvipSlBdQihpihM/S3Gm OOBo4jJ1apFj+GeABTQQsNPIE/0K2lv9NpHp0XyPLtXCe2AMR9d8P3LnUmgCVYfU7VjQlZ emKgNoHMGVxcG3xZzUrGHcNQgeuKEeKiA8FLn/qizfDweFIqeCmveJqccgnfb+VShvRn0I VF3xy+fTp3/SSHX/ghFNnzrjLw1oDs1MY1Cp76mhoorHLcrByqIDqLEIPkxknA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1688149072; a=rsa-sha256; cv=none; b=xIVl2sq5I3nGj/fnooT//N3YTtsDAUjvbYp3+sYHFrQh88QJJ8YjjqhYZSkW5hdgqx7g4d KsKEBr7YACBt7oxg86MQeQ/Cf0+2F1yWM73humsDyeNV2fyQCbmrO5QdjjuiuomeA5yd+P cSVwS/r+ojbanuIjydbUPhV+VN9OBTDK5GjP8pYVgLfd7P7yhrIPBdCJmaBV8t3MI7myuZ iJsSzxLWM+4SYQqS65yjtt9BL9RtuHpQv/xc6wYgxw1OIZfkiMcIhB/pW/lT0n2yZsHGbU eTcpI/XqjedSLhoxKOwK/CCXyNiyEWpyJbIWL9Iru4SzGbgNnQkPYYnFBUABvA== Received: from ampere2.nyi.freebsd.org (ampere2.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:24]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4Qt3TD1pvJz188G for ; Fri, 30 Jun 2023 18:17:52 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 2332 by ampere2.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on ampere2.nyi.freebsd.org); Fri, 30 Jun 2023 18:17:52 +0000 To: yuri@FreeBSD.org Subject: [package - main-arm64-default][science/rdkit] Failed for rdkit-2023.03.2 in build Cc: pkg-fallout@FreeBSD.org Date: Fri, 30 Jun 2023 18:17:52 +0000 Message-Id: <649f1c50.2332.6ca673f3@ampere2.nyi.freebsd.org> From: X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere2/data/main-arm64-default/p7520ea4fbadd_sfd774e065c/logs/rdkit-2023.03.2.log Build URL: https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-arm64-default&build=p7520ea4fbadd_sfd774e065c Log: =>> Building science/rdkit build started at Fri Jun 30 18:05:23 UTC 2023 port directory: /usr/ports/science/rdkit package name: rdkit-2023.03.2 building for: FreeBSD main-arm64-default-job-05 14.0-CURRENT FreeBSD 14.0-CURRENT 1400092 arm64 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400089 Jail OSVERSION: 1400092 Job Id: 05 !!! Jail is newer than host. (Jail: 1400092, Host: 1400089) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400092 UNAME_v=FreeBSD 14.0-CURRENT 1400092 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/main-arm64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-arm64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-arm64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-arm64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for rdkit-2023.03.2: DOCS=on: Build and/or install documentation PGSQL=off: Build the PostgreSQL cartridge PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/rdkit/work/.cache HOME=/wrkdirs/usr/ports/science/rdkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/rdkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/rdkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/rdkit/work/.cache HOME=/wrkdirs/usr/ports/science/rdkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/rdkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/rdkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/rdkit/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="instal l -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- SHLIB_VER=2023.03.2 PORTDOCS="" DOCS="" NO_DOCS="@comment " PGSQL="@comment " NO_PGSQL="" PYTHON="" NO_PYTHON="@comment " LITTLE_ENDIAN="" CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/RDKit" EXAMPLESDIR="share/examples/rdkit" DATADIR="share/RDKit" WWWDIR="www/rdkit" ETCDIR="etc/rdkit" --End PLIST_SUB-- --SUB_LIST-- DOCS="" NO_DOCS="@comment " PGSQL="@comment " NO_PGSQL="" PYTHON="" NO_PYTHON="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/RDKit DOCSDIR=/usr/local/share/doc/RDKit EXAMPLESDIR=/usr/local/share/examples/rdkit WWWDIR=/usr/local/www/rdkit ETCDIR=/usr/local/etc/rdkit --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: aarch64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: aarch64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: aarch64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=aarch64 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400092 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License BSD3CLAUSE accepted by the user =========================================================================== =================================================== ===> rdkit-2023.03.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.19.1_3.pkg [main-arm64-default-job-05] Installing pkg-1.19.1_3... [main-arm64-default-job-05] Extracting pkg-1.19.1_3: .......... done ===> rdkit-2023.03.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of rdkit-2023.03.2 =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user => Comic_Neue.zip doesn't seem to exist in /portdistfiles/rdkit-2023.03.2. => Attempting to fetch https://fonts.google.com/download?family=Comic%20Neue&dummy=/Comic_Neue.zip fetch: https://fonts.google.com/download?family=Comic%20Neue&dummy=/Comic_Neue.zip: size unknown fetch: https://fonts.google.com/download?family=Comic%20Neue&dummy=/Comic_Neue.zip: size of remote file is not known Comic_Neue.zip 176 kB 2596 kBps 00s => rdkit-rdkit-Release_2023_03_2_GH0.tar.gz doesn't seem to exist in /portdistfiles/rdkit-2023.03.2. => Attempting to fetch https://codeload.github.com/rdkit/rdkit/tar.gz/Release_2023_03_2?dummy=/rdkit-rdkit-Release_2023_03_2_GH0.tar.gz fetch: https://codeload.github.com/rdkit/rdkit/tar.gz/Release_2023_03_2?dummy=/rdkit-rdkit-Release_2023_03_2_GH0.tar.gz: size unknown fetch: https://codeload.github.com/rdkit/rdkit/tar.gz/Release_2023_03_2?dummy=/rdkit-rdkit-Release_2023_03_2_GH0.tar.gz: size of remote file is not known rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 75 MB 10 MBps 08s => rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz doesn't seem to exist in /portdistfiles/rdkit-2023.03.2. => Attempting to fetch https://codeload.github.com/rareylab/RingDecomposerLib/tar.gz/v1.1.3_rdkit?dummy=/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz fetch: https://codeload.github.com/rareylab/RingDecomposerLib/tar.gz/v1.1.3_rdkit?dummy=/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz: size unknown fetch: https://codeload.github.com/rareylab/RingDecomposerLib/tar.gz/v1.1.3_rdkit?dummy=/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz: size of remote file is not known rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz 134 kB 5849 kBps 00s ===> Fetching all distfiles required by rdkit-2023.03.2 for building =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by rdkit-2023.03.2 for building => SHA256 Checksum OK for rdkit-2023.03.2/Comic_Neue.zip. => SHA256 Checksum OK for rdkit-2023.03.2/rdkit-rdkit-Release_2023_03_2_GH0.tar.gz. /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES) Code/GraphMol/FileParsers/CMakeLists.txt:21 (find_package) -- Found Boost: /usr/local/include (found suitable version "1.82.0", minimum required is "1.58.0") found components: system iostreams regex -- Found ZLIB: /usr/lib/libz.so (found version "1.2.13") /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/Data/Fonts/ComicNeue-Regular.ttf already there, skipping the download -- Found Freetype: /usr/local/lib/libfreetype.so (found version "2.12.1") CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES) /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES) Code/GraphMol/RGroupDecomposition/CMakeLists.txt:26 (find_package) -- Found Boost: /usr/local/include (found suitable version "1.82.0", minimum required is "1.58.0") found components: program_options -- Found RapidJSON source in /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/External -- Configuring done (3.8s) -- Generating done (0.8s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_COLOR_MAKEFILE CMAKE_VERBOSE_MAKEFILE FETCHCONTENT_FULLY_DISCONNECTED RDK_OPTIMIZE_NATIVE -- Build files have been written to: /wrkdirs/usr/ports/science/rdkit/work/.build =========================================================================== =================================================== ===> Building for rdkit-2023.03.2 [ 0% 2/617] cd /wrkdirs/usr/ports/science/rdkit/work/.build/External/INCHI-API && /usr/local/bin/cmake -E copy /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/External/INCHI-API/python/noinchi.py /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/rdkit/Chem/inchi.py [ 0% 3/617] /usr/bin/cc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF 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Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/Code/GraphMol/Canon.cpp Assertion failed: (VDecl->isLinkageValid()), function DeduceVariableDeclarationType, file /usr/local/poudriere/jails/main-arm64/usr/src/contrib/llvm-project/clang/lib/Sema/SemaDecl.cpp, line 12705. PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script. Stack dump: 0. Program arguments: /usr/bin/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -fstack-protect or-strong -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/Code/GraphMol/Canon.cpp 1. /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/Code/GraphMol/Canon.cpp:84:2: current parser token ';' 2. /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/Code/GraphMol/Canon.cpp:21:1: parsing namespace 'RDKit' 3. /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/Code/GraphMol/Canon.cpp:22:1: parsing namespace 'RDKit::Canon' #0 0x000000000547c7b4 (/usr/bin/c+++0x547c7b4) #1 0x000000000547ab24 (/usr/bin/c+++0x547ab24) #2 0x000000000542aff4 (/usr/bin/c+++0x542aff4) #3 0x000000008bbf3574 (/lib/libthr.so.3+0x2a574) c++: error: clang frontend command failed with exit code 134 (use -v to see invocation) FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: aarch64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin c++: note: diagnostic msg: ******************** PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT: Preprocessed source(s) and associated run script(s) are located at: c++: note: diagnostic msg: /tmp/Canon-276afe.cpp c++: note: diagnostic msg: /tmp/Canon-276afe.sh c++: note: diagnostic msg: ******************** [ 21% 130/617] /usr/bin/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -fstack-protector-stro ng -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/science/rdkit