From nobody Mon Jun 26 22:54:46 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Qqjpb1Vm3z4j1kJ for ; Mon, 26 Jun 2023 22:54:47 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4QqjpZ533Pz3PkB for ; Mon, 26 Jun 2023 22:54:46 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1687820086; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=axbwM64ZMb8tPQ/TUKOIejvygaQCiX4FgkjRazGmm3g=; b=fgngYIli8A7bhIsIJt+auiKwSvVtZgiivrAkqhaTdITe7Ju7bMq1uyOlwwnwuT66NA1BQy HQNznTmiZ2pqj3/XlP+RccxftvDlp025Cpms6t3SZcZErqWAkU7/gVguPC+ypACkgQ9FIb VkIrAj2vrtqqEcB/agTEE+tyDrVjvyIBwXnEfdoX5/YNwbjWfqVm0m49W6JVOU23TeFcPA qiGEnZibuk3kV1CnmhxMplGTVYrzOVlvIAtfiHi8TzIaU9tA9mVOTy9cxqVq/D5Q11f0qo 2VsmMAsmYT82+nUd53Ye4qWa3fFv73b/dA4J0oJnqQhpgG+LrrffoSAl7ESRwg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1687820086; a=rsa-sha256; cv=none; b=Yn1WDP7YGkHazCeJbwSKRd99H/EMwQQqhIrXuoAA/Ot23ZxZ9vn2PqBe/NQEigxUNhFneb Je6Jr2DdgFPpg6aKKR7vvJdhH59HLIs08Gh/3CJRe7uydTVLEFJZbIxjWvRwhN+H2Cad+J d4eE5JoPsVBJ22UMGOjyBMDcCL/WthM+uxVjCbsHq1fjJhC3YAOEifQUE151jn2b+ZYIkt 4q2VI08ZXLNHDxF/T77BKrAdMQMQ6jJZUK0A+5Ynq3flxFYjEvFjbFXbGzhyAf1/6VcSAX VtdIzgQpvfDtsG4u/DZ8oiTJzGwmJVB+QHBAHn4ql3iyjOO2pm3MnrPOkiMQsA== Received: from beefy18.nyi.freebsd.org (beefy18.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:21]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4QqjpZ47KkzT97 for ; Mon, 26 Jun 2023 22:54:46 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 1b3d by beefy18.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy18.nyi.freebsd.org); Mon, 26 Jun 2023 22:54:46 +0000 To: yuri@FreeBSD.org Subject: [package - main-amd64-default][science/antioch] Failed for antioch-0.4.0.156_14 in build Cc: pkg-fallout@FreeBSD.org Date: Mon, 26 Jun 2023 22:54:46 +0000 Message-Id: <649a1736.1b3d.6197125d@beefy18.nyi.freebsd.org> From: X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/p4785b313b958_se8efee297c/logs/antioch-0.4.0.156_14.log Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=p4785b313b958_se8efee297c Log: =>> Building science/antioch build started at Mon Jun 26 22:53:45 UTC 2023 port directory: /usr/ports/science/antioch package name: antioch-0.4.0.156_14 building for: FreeBSD main-amd64-default-job-04 14.0-CURRENT FreeBSD 14.0-CURRENT 1400091 amd64 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400089 Jail OSVERSION: 1400091 Job Id: 04 !!! Jail is newer than host. (Jail: 1400091, Host: 1400089) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400091 UNAME_v=FreeBSD 14.0-CURRENT 1400091 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --disable-static --enable-eigen --with-eigen-include=/usr/local/include/eigen3 --enable-opencl --with-metaphysicl=/usr/local --with-viennacl=/usr/local/include --with-gsl=/usr/local --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/antioch/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/antioch/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/antioch/work/.cache HOME=/wrkdirs/usr/ports/science/antioch/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/antioch/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/antioch/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh DEFAULT_AUTOCONF=2.71 CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/antioch/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/antioch/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/antioch/work/.cache HOME=/wrkdirs/usr/ports/science/antioch/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/antioch/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/antioch/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DEFAULT_AUTOCONF=2.71 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPRE FIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/antioch" EXAMPLESDIR="share/examples/antioch" DATADIR="share/antioch" WWWDIR="www/antioch" ETCDIR="etc/antioch" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/antioch DOCSDIR=/usr/local/share/doc/antioch EXAMPLESDIR=/usr/local/share/examples/antioch WWWDIR=/usr/local/www/antioch ETCDIR=/usr/local/etc/antioch --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400091 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License LGPL21 accepted by the user =========================================================================== =================================================== ===> antioch-0.4.0.156_14 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.19.1_1.pkg [main-amd64-default-job-04] Installing pkg-1.19.1_1... [main-amd64-default-job-04] Extracting pkg-1.19.1_1: .......... done ===> antioch-0.4.0.156_14 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of antioch-0.4.0.156_14 =========================================================================== =================================================== =========================================================================== =================================================== ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by antioch-0.4.0.156_14 for building =========================================================================== =================================================== ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by antioch-0.4.0.156_14 for building => SHA256 Checksum OK for libantioch-antioch-v0.4.0-156-g90ffa43_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by antioch-0.4.0.156_14 for building ===> Extracting for antioch-0.4.0.156_14 => SHA256 Checksum OK for libantioch-antioch-v0.4.0-156-g90ffa43_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for antioch-0.4.0.156_14 ===> Applying FreeBSD patches for antioch-0.4.0.156_14 from /usr/ports/science/antioch/files =========================================================================== =================================================== ===> antioch-0.4.0.156_14 depends on file: /usr/local/include/metaphysicl/metaphysicl_version.h - not found ===> Installing existing package /packages/All/MetaPhysicL-1.3.3_1.pkg [main-amd64-default-job-04] Installing MetaPhysicL-1.3.3_1... [main-amd64-default-job-04] Extracting MetaPhysicL-1.3.3_1: .......... done configure: Boost not available, not searching for the Boost chrono library configure: Boost not available, not searching for the Boost date_time library test: -ge: unexpected operator configure: Boost not available, not searching for the Boost filesystem library configure: Boost not available, not searching for the Boost system library test: -ge: unexpected operator test: -lt: unexpected operator configure: Boost not available, not searching for the Boost thread library checking whether we are using the Microsoft C++ compiler... (cached) no checking for CL/cl.h... (cached) yes checking for OpenCL/cl.h... (cached) no checking for windows.h... (cached) no checking for OpenCL library... (cached) -lOpenCL checking for vexcl/vexcl.hpp... no configure: optional VEXCL library not found checking whether c++ supports C++11 features by default... yes checking for viennacl/vector.hpp... yes checking whether we are using the Microsoft C++ compiler... (cached) no checking for CL/cl.h... (cached) yes checking for OpenCL/cl.h... (cached) no checking for windows.h... (cached) no checking for OpenCL library... (cached) -lOpenCL configure: Boost not available, not searching for boost/numeric/ublas/vector.hpp checking for /usr/local/include/eigen3/Eigen/Eigen... yes checking for Eigen/Dense... yes checking for eigen - version >= 3.1.2... yes <<< Configuring library with Eigen support >>> checking for metaphysicl/metaphysicl_version.h... yes checking for metaphysicl - version >= 0.0.0... yes checking for -lmetaphysicl linkage... yes checking for grvy.h... no configure: optional GRVY library not found checking for gsl-config... /usr/local/bin/gsl-config checking for gsl - version >= 1.10... yes checking for gsl/gsl_math.h... yes checking for -lgsl linkage... checking for gsl_sf_gamma in -lgsl... yes checking for cppunit-config... no checking for Cppunit - version >= 1.10.0... no checking whether c++ supports C++11 features by default... (cached) yes checking whether c++ supports C++11 -> decltype(this->f())... no configure: No compiler supporting trailing decltype(this->f()) was found checking for C++11 static_assert support... yes checking for git... no checking for doxygen... no configure: WARNING: doxygen not found - will not generate any doxygen documentation checking for perl... /usr/local/bin/perl find: /wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/{src,test}: No such file or directory checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating doxygen/txt_common/about_vpath.page config.status: creating test/kinetics_unit_air_5sp.sh config.status: creating test/kinetics_unit_thrust_air_5sp.sh config.status: creating test/kinetics_vec_unit_air_5sp.sh config.status: creating test/kinetics_regression_air_5sp.sh config.status: creating test/kinetics_regression_vec_air_5sp.sh config.status: creating test/photochemical_rate_unit.sh config.status: creating test/parsing_xml.sh config.status: creating test/fail_parsing_xml_1.sh config.status: creating test/fail_parsing_xml_2.sh config.status: creating test/parsing_chemkin.sh config.status: creating test/kinetics_reactive_scheme_unit.sh config.status: creating test/nasa_evaluator_unit.sh config.status: creating test/ascii_parser_unit.sh config.status: creating test/kinetics_partial_order_unit.sh config.status: creating src/utilities/include/antioch/antioch_version.h config.status: creating antioch.pc config.status: creating doxygen/Makefile config.status: creating doxygen/antioch.dox config.status: creating Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating examples/Makefile config.status: creating antioch_config.h.tmp config.status: executing antioch_config.h commands config.status: creating antioch_config.h - prefix ANTIOCH for antioch_config.h.tmp defines config.status: executing depfiles commands config.status: executing libtool commands ----------------------------------- SUMMARY ----------------------------------- Package version............... : antioch-0.5.0 C++ compiler.................. : c++ C++ compiler flags............ : -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall Install dir................... : /usr/local Build user.................... : root Build host.................... : main-amd64-default-job-04 Configure date................ : 2023-06-26 22:54 Build architecture............ : amd64-portbld-freebsd14.0 Revision id................... : external Testing Options: Number of tuples............ : 2 CPPUnit..................... : no Optional Libraries: Eigen....................... : yes MetaPhysicL................. : yes METAPHYSICL_CPPFLAGS...... : -I/usr/local/include -I/usr/local/src METAPHYSICL_LDFLAGS....... : -L/usr/local/lib -Wl,-rpath,/usr/local/lib METAPHYSICL_LIBS.......... : -lmetaphysicl VexCL....................... : no ViennaCL.................... : yes VIENNACL_CPPFLAGS......... : -I/usr/local/include -pthread -D_THREAD_SAFE -pthread VIENNACL_LDFLAGS.......... : VIENNACL_LIBS............. : -lOpenCL -lm GRVY........................ : no GSL......................... : yes GSL_CPPFLAGS.............. : -I/usr/local/include GSL_LDFLAGS............... : -L/usr/local/lib -Wl,-rpath,/usr/local/lib GSL_LIBS.................. : -lgsl -lgslcblas ------------------------------------------------------------------------------- Configure complete, now type 'make' and then 'make install'. =========================================================================== =================================================== ===> Building for antioch-0.4.0.156_14 gmake[1]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' Makefile:1249: warning: ignoring prerequisites on suffix rule definition Usage: update_license.pl [OPTION] LICENSE-FILE SOURCE-FILES... OPTIONS: -S dir use dir as location of source-files -c2f_comment convert c++ comments in license header to F90 style -c2sh_comment convert c++ comments in license header to shell script style echo 'updated source license headers' >.license.stamp gmake all-recursive gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' Makefile:1249: warning: ignoring prerequisites on suffix rule definition Making all in src gmake[3]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/src' depbase=`echo apps/version.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT apps/version.o -MD -MP -MF $depbase.Tpo -c -o apps/version.o apps/version.C &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo core/src/chemical_mixture.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT core/src/chemical_mixture.lo -MD -MP -MF $depbase.Tpo -c -o core/src/chemical_mixture.lo core/src/chemical_mixture.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT core/src/chemical_mixture.lo -MD -MP -MF core/src/.deps/chemical_mixture.Tpo -c core/src/chemical_mixture.C -fPIC -DPIC -o core/src/.libs/chemical_mixture.o depbase=`echo parsing/src/ascii_parser.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/ascii_parser.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/ascii_parser.lo parsing/src/ascii_parser.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/ascii_parser.lo -MD -MP -MF parsing/src/.deps/ascii_parser.Tpo -c parsing/src/ascii_parser.C -fPIC -DPIC -o parsing/src/.libs/ascii_parser.o depbase=`echo parsing/src/blottner_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/blottner_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/blottner_parsing.lo parsing/src/blottner_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/blottner_parsing.lo -MD -MP -MF parsing/src/.deps/blottner_parsing.Tpo -c parsing/src/blottner_parsing.C -fPIC -DPIC -o parsing/src/.libs/blottner_parsing.o depbase=`echo parsing/src/cea_mixture_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/cea_mixture_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/cea_mixture_parsing.lo parsing/src/cea_mixture_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/cea_mixture_parsing.lo -MD -MP -MF parsing/src/.deps/cea_mixture_parsing.Tpo -c parsing/src/cea_mixture_parsing.C -fPIC -DPIC -o parsing/src/.libs/cea_mixture_parsing.o depbase=`echo parsing/src/cea_mixture_ascii_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/cea_mixture_ascii_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/cea_mixture_ascii_parsing.lo parsing/src/cea_mixture_ascii_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/cea_mixture_ascii_parsing.lo -MD -MP -MF parsing/src/.deps/cea_mixture_ascii_parsing.Tpo -c parsing/src/cea_mixture_ascii_parsing.C -fPIC -DPIC -o parsing/src/.libs/cea_mixture_ascii_parsing.o depbase=`echo parsing/src/chemkin_parser.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/chemkin_parser.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/chemkin_parser.lo parsing/src/chemkin_parser.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/chemkin_parser.lo -MD -MP -MF parsing/src/.deps/chemkin_parser.Tpo -c parsing/src/chemkin_parser.C -fPIC -DPIC -o parsing/src/.libs/chemkin_parser.o parsing/src/chemkin_parser.C:776:100: error: no member named 'ptr_fun' in namespace 'std' out[i].erase(out[i].begin(), std::find_if(out[i].begin(), out[i].end(), std::not1(std::ptr_fun(std::isspace)))); ~~~~~^ parsing/src/chemkin_parser.C:776:111: error: expected '(' for function-style cast or type construction out[i].erase(out[i].begin(), std::find_if(out[i].begin(), out[i].end(), std::not1(std::ptr_fun(std::isspace)))); ~~~^ parsing/src/chemkin_parser.C:776:116: error: expected '(' for function-style cast or type construction out[i].erase(out[i].begin(), std::find_if(out[i].begin(), out[i].end(), std::not1(std::ptr_fun(std::isspace)))); ~~~^ parsing/src/chemkin_parser.C:778:86: error: no member named 'ptr_fun' in namespace 'std' out[i].erase(std::find_if(out[i].rbegin(), out[i].rend(), std::not1(std::ptr_fun(std::isspace))).base(), out[i].end()); ~~~~~^ parsing/src/chemkin_parser.C:778:97: error: expected '(' for function-style cast or type construction out[i].erase(std::find_if(out[i].rbegin(), out[i].rend(), std::not1(std::ptr_fun(std::isspace))).base(), out[i].end()); ~~~^ parsing/src/chemkin_parser.C:778:102: error: expected '(' for function-style cast or type construction out[i].erase(std::find_if(out[i].rbegin(), out[i].rend(), std::not1(std::ptr_fun(std::isspace))).base(), out[i].end()); ~~~^ depbase=`echo parsing/src/nasa_mixture_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/nasa_mixture_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/nasa_mixture_parsing.lo parsing/src/nasa_mixture_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/nasa_mixture_parsing.lo -MD -MP -MF parsing/src/.deps/nasa_mixture_parsing.Tpo -c parsing/src/nasa_mixture_parsing.C -fPIC -DPIC -o parsing/src/.libs/nasa_mixture_parsing.o 6 errors generated. gmake[3]: *** [Makefile:981: parsing/src/chemkin_parser.lo] Error 1 gmake[3]: *** Waiting for unfinished jobs.... gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/src' gmake[2]: *** [Makefile:726: all-recursive] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' gmake[1]: *** [Makefile:608: all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/science/antioch