From nobody Mon Jun 26 15:09:45 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4QqWV13TZtz4k3LR for ; Mon, 26 Jun 2023 15:09:45 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4QqWV11XRNz4c0P for ; Mon, 26 Jun 2023 15:09:45 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1687792185; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=UKoRPJ07zoLdssdH0GVo1pK78pmsP5xfd1lNrWNZ3NY=; b=xWxwVqELmRkaGgH5TUWi6edRYQUq54I5AfA5xmLUk4zNPIlDzdNcA9lCzSNELfUGOjEZCl fFqknIYO+iDk6w3H9AsjnFVd8Zk2MwORQ9WidraaefisAosn4wirQ5EVZg0k3ud13j8kBk +GpRNoAHYrQ2dlhw56VpnUYobb+U8O62FMdifeiWmY22laQ8Ei8HuP5s9HcuvX7p1ixbUh vCLmXww9nMT8cRE+Hn3/SZbOwrvuH+KnzILWi3IVwXSmjmezfpRsjjyeJ8snx6mlA8SAJk L97FoDNFf7jRnEXb2QP1GHPjfOTJJSCybgq3HEVCE9A/tnkJ/w8c2IeoJXQiFg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1687792185; a=rsa-sha256; cv=none; b=hzclA0t15uM+rH0s6xe023iQx+gslX3uz5+P9f1M4zeEJin6V3lF3mpFuzeTqAa1lB5nTA Xmu/bgxZsxLL79iBrJEnB6M+f3JwZtw6RW8r2y/NXfbLs4hFU40V4Eg/7tqR2Wmujs/k8T mnBroEtEFCcrobBfWmNwMTYsoqGhV5T6VMxBfGKu7Yz6bfEbTzUeK96P8Qe0Ru+zZ6paVP ktAd9eBKCzK8Xmjv45KGr+CpphEeDjMxI1NI90AQ5vbnZbxIdyQooiCVYunmxuqBjKdsZc Co2er+AknCexls44UhhYGyMgeVX+CAaWUEiYCkxQtSGlfwh1nt8VR9dlPTDkTA== Received: from beefy18.nyi.freebsd.org (beefy18.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:21]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4QqWV10bcTzF18 for ; Mon, 26 Jun 2023 15:09:45 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 1179 by beefy18.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy18.nyi.freebsd.org); Mon, 26 Jun 2023 15:09:45 +0000 To: yuri@FreeBSD.org Subject: [package - main-amd64-default][science/py-hoomd-blue] Failed for py39-hoomd-blue-4.0.0 in build Cc: pkg-fallout@FreeBSD.org Date: Mon, 26 Jun 2023 15:09:45 +0000 Message-Id: <6499aa39.1179.6d143912@beefy18.nyi.freebsd.org> From: X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/p4785b313b958_se8efee297c/logs/py39-hoomd-blue-4.0.0.log Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=p4785b313b958_se8efee297c Log: =>> Building science/py-hoomd-blue build started at Mon Jun 26 15:04:56 UTC 2023 port directory: /usr/ports/science/py-hoomd-blue package name: py39-hoomd-blue-4.0.0 building for: FreeBSD main-amd64-default-job-01 14.0-CURRENT FreeBSD 14.0-CURRENT 1400091 amd64 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400089 Jail OSVERSION: 1400091 Job Id: 01 !!! Jail is newer than host. (Jail: 1400091, Host: 1400089) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400091 UNAME_v=FreeBSD 14.0-CURRENT 1400091 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for py39-hoomd-blue-4.0.0: TBB=on: Enable support for Threading Building Blocks (TBB) ====> MPI (Message Passing Interface) support: you have to select exactly one of them NOMPI=off: Build without parallel processing support MPICH=on: Parallel processing support via MPICH 3 OPENMPI=off: Parallel processing support via Open MPI ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-hoomd-blue/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-hoomd-blue/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-hoomd-blue/work/.cache HOME=/wrkdirs/usr/ports/science/py-hoomd-blue/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-hoomd-blue/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-hoomd-blue/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-hoomd-blue/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-hoomd-blue/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-hoomd-blue/work/.cache HOME=/wrkdirs/usr/ports/science/py-hoomd-blue/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-hoomd-blue/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-hoomd-blue/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/py-hoomd-blue/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lexecinfo -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- MPICH="" NO_MPICH="@comment " NOMPI="@comment " NO_NOMPI="" OPENMPI="@comment " NO_OPENMPI="" TBB="" NO_TBB="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/hoomd-blue" EXAMPLESDIR="share/examples/hoomd-blue" DATADIR="share/hoomd-blue" WWWDIR="www/hoomd-blue" ETCDIR="etc/hoomd-blue" --End PLIST_SUB-- --SUB_LIST-- MPICH="" NO_MPICH="@comment " NOMPI="@comment " NO_NOMPI="" OPENMPI="@comment " NO_OPENMPI="" TBB="" NO_TBB="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/hoomd-blue DOCSDIR=/usr/local/share/doc/hoomd-blue EXAMPLESDIR=/usr/local/share/examples/hoomd-blue WWWDIR=/usr/local/www/hoomd-blue ETCDIR=/usr/local/etc/hoomd-blue --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400091 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License BSD3CLAUSE accepted by the user =========================================================================== =================================================== ===> py39-hoomd-blue-4.0.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.19.1_1.pkg [main-amd64-default-job-01] Installing pkg-1.19.1_1... [main-amd64-default-job-01] Extracting pkg-1.19.1_1: .......... done ===> py39-hoomd-blue-4.0.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-hoomd-blue-4.0.0 =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-hoomd-blue-4.0.0 for building =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-hoomd-blue-4.0.0 for building => SHA256 Checksum OK for glotzerlab-hoomd-blue-v4.0.0_GH0.tar.gz. => SHA256 Checksum OK for glotzerlab-upp11-0c1fb8d_GH0.tar.gz. => SHA256 Checksum OK for glotzerlab-nano-signal-slot-34223a4_GH0.tar.gz. => SHA256 Checksum OK for glotzerlab-quickhull-a706b5b_GH0.tar.gz. => SHA256 Checksum OK for glotzerlab-random123-a2c4f04_GH0.tar.gz. => SHA256 Checksum OK for glotzerlab-HIP-d211f99_GH0.tar.gz. => SHA256 Checksum OK for glotzerlab-hipCUB-c70e193_GH0.tar.gz. => SHA256 Checksum OK for mphowardlab-neighbor-ba0f068_GH0.tar.gz. => SHA256 Checksum OK for mphowardlab-hipper-b6da049_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user =========================================================================== =================================================== ===> py39-hoomd-blue-4.0.0 depends on shared library: libtbb.so - not found ===> Installing existing package /packages/All/onetbb-2021.9.0.pkg [main-amd64-default-job-01] Installing onetbb-2021.9.0... [main-amd64-default-job-01] `-- Installing hwloc2-2.8.0... [main-amd64-default-job-01] | `-- Installing level-zero-1.12.0... [main-amd64-default-job-01] | `-- Extracting level-zero-1.12.0: .......... done [main-amd64-default-job-01] | `-- Installing libpciaccess-0.17... [main-amd64-default-job-01] | `-- Extracting libpciaccess-0.17: ........ done [main-amd64-default-job-01] | `-- Installing libxml2-2.10.4... [main-amd64-default-job-01] | `-- Extracting libxml2-2.10.4: .......... done [main-amd64-default-job-01] `-- Extracting hwloc2-2.8.0: .......... done [main-amd64-default-job-01] Extracting onetbb-2021.9.0: .......... done ===== Message from level-zero-1.12.0: -- ===> NOTICE: The level-zero port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> py39-hoomd-blue-4.0.0 depends on shared library: libtbb.so - found (/usr/local/lib/libtbb.so) ===> Returning to build of py39-hoomd-blue-4.0.0 ===> py39-hoomd-blue-4.0.0 depends on shared library: libmpich.so - not found ===> Installing existing package /packages/All/mpich-3.4.3_2.pkg [main-amd64-default-job-01] Installing mpich-3.4.3_2... [main-amd64-default-job-01] `-- Installing bash-5.2.15... [main-amd64-default-job-01] `-- Extracting bash-5.2.15: .......... done [main-amd64-default-job-01] `-- Installing json-c-0.16... [main-amd64-default-job-01] `-- Extracting json-c-0.16: .......... done [main-amd64-default-job-01] `-- Installing libepoll-shim-0.0.20230411... [main-amd64-default-job-01] `-- Extracting libepoll-shim-0.0.20230411: .......... done [main-amd64-default-job-01] `-- Installing libfabric-1.15.1_1... [main-amd64-default-job-01] `-- Extracting libfabric-1.15.1_1: .......... done [main-amd64-default-job-01] `-- Installing perl5-5.32.1_3... [main-amd64-default-job-01] `-- Extracting perl5-5.32.1_3: .......... done [main-amd64-default-job-01] `-- Installing slurm-wlm-20.02.7_3... [main-amd64-default-job-01] | `-- Installing hdf5-1.12.2_2,1... [main-amd64-default-job-01] | | `-- Installing libaec-1.0.6... [main-amd64-default-job-01] | | `-- Extracting libaec-1.0.6: .......... done [main-amd64-default-job-01] | `-- Extracting hdf5-1.12.2_2,1: .......... done [main-amd64-default-job-01] | `-- Installing libsysinfo-0.0.3_2... [main-amd64-default-job-01] | `-- Extracting libsysinfo-0.0.3_2: ......... done [main-amd64-default-job-01] | `-- Installing lua54-5.4.6... [main-amd64-default-job-01] | | `-- Installing libedit-3.1.20221030,1... [main-amd64-default-job-01] | | `-- Extracting libedit-3.1.20221030,1: .......... done [main-amd64-default-job-01] | `-- Extracting lua54-5.4.6: .......... done [main-amd64-default-job-01] | `-- Installing munge-0.5.15... [main-amd64-default-job-01] | | `-- Installing libgcrypt-1.9.4_1... [main-amd64-default-job-01] | | `-- Installing libgpg-error-1.47... [main-amd64-default-job-01] | | `-- Extracting libgpg-error-1.47: .......... done [main-amd64-default-job-01] | | `-- Extracting libgcrypt-1.9.4_1: .......... done [main-amd64-default-job-01] | `-- Extracting munge-0.5.15: ......... done ===> Creating groups. Creating group 'slurm' with gid '468'. ===> Creating users Creating user 'slurm' with uid '468'. [main-amd64-default-job-01] `-- Extracting slurm-wlm-20.02.7_3: .......... done [main-amd64-default-job-01] Extracting mpich-3.4.3_2: .......... done ===== Message from slurm-wlm-20.02.7_3: -- ===> NOTICE: The slurm-wlm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===== Message from mpich-3.4.3_2: -- ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> py39-hoomd-blue-4.0.0 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) ===> Returning to build of py39-hoomd-blue-4.0.0 =========================================================================== =================================================== ===> Configuring for py39-hoomd-blue-4.0.0 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/py-hoomd-blue/work/.build -- The C compiler identification is Clang 16.0.6 -- The CXX compiler identification is Clang 16.0.6 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring HOOMD 4.0.0 -- Found MPI_C: /usr/local/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/local/lib/libmpicxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found cereal: /usr/local/lib/cmake/cereal -- Found PythonInterp: /usr/local/bin/python3.9 (found suitable version "3.9.17", minimum required is "3") -- Found PythonLibs: /usr/local/lib/libpython3.9.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Performing Test HAS_FLTO_THIN -- Performing Test HAS_FLTO_THIN - Success -- Found pybind11: /usr/local/include (found version "2.10.4") -- Found pybind11: /usr/local/share/cmake/pybind11 /usr/local/include (version 2.10.4) -- Installing hoomd python module to: /usr/local/lib/python3.9/site-packages/hoomd -- Found eigen: /usr/local/share/eigen3/cmake /usr/local/include/eigen3 (version 3.4.0) -- Found TBB: /usr/local/lib/cmake/TBB /usr/local/lib/libtbb.so.12.9 /usr/local/include -- Found plugin: example_plugins/pair_plugin -- Found plugin: example_plugins/updater_plugin -- Configuring done (2.2s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: BOOST_PYTHON_SUFFIX CMAKE_COLOR_MAKEFILE CMAKE_MODULE_LINKER_FLAGS CMAKE_VERBOSE_MAKEFILE FETCHCONTENT_FULLY_DISCONNECTED THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /wrkdirs/usr/ports/science/py-hoomd-blue/work/.build =========================================================================== =================================================== ===> Building for py39-hoomd-blue-4.0.0 [ 0% 2/472] /usr/bin/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hoomd_EXPORTS -I/wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.0.0 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-DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hoomd_EXPORTS -I/wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.0.0 -I/wrkdirs/usr/ports/science/py-hoomd-blue/work/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -fsized-deallocation -MD -MT hoomd/CMakeFiles/_hoomd.dir/ParticleData.cc.o -MF hoomd/CMakeFiles/_hoomd.dir/ParticleData.cc.o.d -o hoomd/CMakeFiles/_hoomd.dir/ParticleData.cc.o -c /wrkdirs/usr/ports/science/py-hoomd-blue/work/h oomd-blue-4.0.0/hoomd/ParticleData.cc FAILED: hoomd/CMakeFiles/_hoomd.dir/ParticleData.cc.o /usr/bin/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hoomd_EXPORTS -I/wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.0.0 -I/wrkdirs/usr/ports/science/py-hoomd-blue/work/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -fsized-deallocation -MD -MT hoomd/CMakeFiles/_hoomd.dir/ParticleData.cc.o -MF hoomd/CMakeFiles/_hoomd.dir/ParticleData.cc.o.d -o hoomd/CMakeFiles/_hoomd.dir/ParticleData.cc.o -c /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.0. 0/hoomd/ParticleData.cc /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.0.0/hoomd/ParticleData.cc:2893:32: error: no template named 'unary_function' in namespace 'std'; did you mean '__unary_function'? struct comm_flag_select : std::unary_function ~~~~~^~~~~~~~~~~~~~ __unary_function /usr/include/c++/v1/__functional/unary_function.h:46:1: note: '__unary_function' declared here using __unary_function = __unary_function_keep_layout_base<_Arg, _Result>; ^ 1 error generated. [ 6% 31/472] /usr/bin/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hoomd_EXPORTS -I/wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.0.0 -I/wrkdirs/usr/ports/science/py-hoomd-blue/work/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -fsized-deallocation -MD -MT hoomd/CMakeFiles/_hoomd.dir/ParticleGroup.cc.o -MF hoomd/CMakeFiles/_hoomd.dir/ParticleGroup.cc.o.d -o hoomd/CMakeFiles/_hoomd.dir/ParticleGroup.cc.o -c /wrkdirs/usr/ports/science/py-hoomd-blue/wor k/hoomd-blue-4.0.0/hoomd/ParticleGroup.cc ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/science/py-hoomd-blue