[package - main-i386-default][science/smoldyn] Failed for smoldyn-2.71 in build
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Date: Mon, 26 Jun 2023 08:53:41 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy17/data/main-i386-default/p4785b313b958_se8efee297c/logs/smoldyn-2.71.log
Build URL: https://pkg-status.freebsd.org/beefy17/build.html?mastername=main-i386-default&build=p4785b313b958_se8efee297c
Log:
=>> Building science/smoldyn
build started at Mon Jun 26 08:53:02 UTC 2023
port directory: /usr/ports/science/smoldyn
package name: smoldyn-2.71
building for: FreeBSD main-i386-default-job-12 14.0-CURRENT FreeBSD 14.0-CURRENT 1400091 i386
maintained by: yuri@FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400089
Jail OSVERSION: 1400091
Job Id: 12
!!! Jail is newer than host. (Jail: 1400091, Host: 1400089) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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---Begin OPTIONS List---
===> The following configuration options are available for smoldyn-2.71:
PYTHON=off: Python bindings or support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/smoldyn/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/smoldyn/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/smoldyn/work/.cache HOME=/wrkdirs/usr/ports/science/smoldyn/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/smoldyn/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/smoldyn/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
--End CONFIGURE_ENV--
--MAKE_ENV--
NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/science/smoldyn/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/smoldyn/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/smoldyn/work/.cache HOME=/wrkdirs/usr/ports/science/smoldyn/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/smoldyn/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/smoldyn/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/smoldyn/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include
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--End PLIST_SUB--
--SUB_LIST--
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=======================<phase: check-sanity >============================
===> License LGPL3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> smoldyn-2.71 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.1_1.pkg
[main-i386-default-job-12] Installing pkg-1.19.1_1...
[main-i386-default-job-12] Extracting pkg-1.19.1_1: .......... done
===> smoldyn-2.71 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of smoldyn-2.71
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License LGPL3 accepted by the user
===> Fetching all distfiles required by smoldyn-2.71 for building
===========================================================================
=======================<phase: checksum >============================
===> License LGPL3 accepted by the user
===> Fetching all distfiles required by smoldyn-2.71 for building
=> SHA256 Checksum OK for smoldyn-2.71.tgz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License LGPL3 accepted by the user
===> Fetching all distfiles required by smoldyn-2.71 for building
===> Extracting for smoldyn-2.71
=> SHA256 Checksum OK for smoldyn-2.71.tgz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for smoldyn-2.71
<snip>
[main-i386-default-job-12] `-- Installing jbigkit-2.1_1...
[main-i386-default-job-12] `-- Extracting jbigkit-2.1_1: .......... done
[main-i386-default-job-12] `-- Installing jpeg-turbo-2.1.5.1...
[main-i386-default-job-12] `-- Extracting jpeg-turbo-2.1.5.1: .......... done
[main-i386-default-job-12] `-- Installing libdeflate-1.18...
[main-i386-default-job-12] `-- Extracting libdeflate-1.18: .......... done
[main-i386-default-job-12] `-- Installing zstd-1.5.5...
[main-i386-default-job-12] | `-- Installing liblz4-1.9.4,1...
[main-i386-default-job-12] | `-- Extracting liblz4-1.9.4,1: .......... done
[main-i386-default-job-12] `-- Extracting zstd-1.5.5: .......... done
[main-i386-default-job-12] Extracting tiff-4.4.0_1: .......... done
===> smoldyn-2.71 depends on shared library: libtiff.so - found (/usr/local/lib/libtiff.so)
===> Returning to build of smoldyn-2.71
===> smoldyn-2.71 depends on shared library: libGL.so - not found
===> Installing existing package /packages/All/libglvnd-1.6.0.pkg
[main-i386-default-job-12] Installing libglvnd-1.6.0...
[main-i386-default-job-12] Extracting libglvnd-1.6.0: .......... done
===> smoldyn-2.71 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so)
===> Returning to build of smoldyn-2.71
===> smoldyn-2.71 depends on shared library: libGLU.so - not found
===> Installing existing package /packages/All/libGLU-9.0.2_2.pkg
[main-i386-default-job-12] Installing libGLU-9.0.2_2...
[main-i386-default-job-12] Extracting libGLU-9.0.2_2: ..... done
===> smoldyn-2.71 depends on shared library: libGLU.so - found (/usr/local/lib/libGLU.so)
===> Returning to build of smoldyn-2.71
===> smoldyn-2.71 depends on shared library: libglut.so - not found
===> Installing existing package /packages/All/freeglut-3.2.1.pkg
[main-i386-default-job-12] Installing freeglut-3.2.1...
[main-i386-default-job-12] `-- Installing libXrandr-1.5.2...
[main-i386-default-job-12] | `-- Installing libXrender-0.9.10_2...
[main-i386-default-job-12] | `-- Extracting libXrender-0.9.10_2: .......... done
[main-i386-default-job-12] `-- Extracting libXrandr-1.5.2: .......... done
[main-i386-default-job-12] `-- Installing libXxf86vm-1.1.4_3...
[main-i386-default-job-12] `-- Extracting libXxf86vm-1.1.4_3: .......... done
[main-i386-default-job-12] Extracting freeglut-3.2.1: .......... done
=====
Message from freeglut-3.2.1:
--
Joystick support is untested and it is unknown if it works.
Do not hesitate to contact x11@FreeBSD.org if this causes issues.
===> smoldyn-2.71 depends on shared library: libglut.so - found (/usr/local/lib/libglut.so)
===> Returning to build of smoldyn-2.71
===========================================================================
=======================<phase: configure >============================
===> Configuring for smoldyn-2.71
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/smoldyn/work/.build
-- The CXX compiler identification is Clang 16.0.6
-- The C compiler identification is Clang 16.0.6
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Smoldyn version is set to: ''
-- Compiling for Smoldyn: ON
-- Compiling for Libsmoldyn: ON
-- Option to compile Smoldyn for VCell: OFF
-- Option to cross-compile for Windows using MinGW: OFF
-- Option to include NextSubvolume: ON
-- Option to include VTK: OFF
-- Option to compile with static libraries: OFF
-- Option to include OpenGL support: ON
-- Option to include LibTiff: ON
-- Option to include Zlib: OFF
-- Option to incude Python module: false
-- Option to run Libsmoldyn examples: OFF
-- Option to build documentation: OFF
-- Performing Test C_FLAG_EXISTS
-- Performing Test C_FLAG_EXISTS - Success
-- Performing Test CXX_FLAG_EXISTS
-- Performing Test CXX_FLAG_EXISTS - Success
-- [COMPILER] Adding -Wno-unused-parameter
-- Build type: Release
-- Compiling on a Linux computer
-- CMAKE_CXX_FLAGS variable: '-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include'
-- BioNetGen path: '/usr/local/bin/BioNetGen/BNG2.pl'
-- Found OpenGL: /usr/local/lib/libOpenGL.so
-- OpenGL found: '/usr/local/include', '/usr/local/lib/libGL.so;/usr/local/lib/libGLU.so'
-- Found GLUT: /usr/local/lib/libglut.so
-- Glut found: '/usr/local/include', '/usr/local/lib/libglut.so;/usr/local/lib/libXmu.so;/usr/local/lib/libXi.so'
-- Found TIFF: /usr/local/lib/libtiff.so (found version "4.4.0")
-- Found Libtiff: '/usr/local/include', '/usr/local/lib/libtiff.so'
-- Boost headers found: '/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/boost_include'
-- Configuring done (0.8s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
BOOST_PYTHON_SUFFIX
CMAKE_COLOR_MAKEFILE
CMAKE_MODULE_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
FETCHCONTENT_FULLY_DISCONNECTED
Python_ADDITIONAL_VERSIONS
THREADS_HAVE_PTHREAD_ARG
-- Build files have been written to: /wrkdirs/usr/ports/science/smoldyn/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for smoldyn-2.71
[ 1% 2/58] /usr/bin/cc -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/libSteve -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn -I/wrkdirs/usr/ports/science/smoldyn/work/.build -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -c /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn/smolboxes.c
[ 3% 3/58] /usr/bin/cc -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/libSteve -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn -I/wrkdirs/usr/ports/science/smoldyn/work/.build -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -c /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn/smolbng.c
[ 5% 4/58] /usr/bin/cc -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/libSteve -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn -I/wrkdirs/usr/ports/science/smoldyn/work/.build -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -c /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn/smolcomparts.c
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[ 46% 28/58] /usr/bin/c++ -Dsmoldyn_shared_EXPORTS -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/libSteve -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn -I/wrkdirs/usr/ports/science/smoldyn/work/.build -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -c /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn/smolsim.cpp
[ 48% 29/58] /usr/bin/cc -Dsmoldyn_shared_EXPORTS -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/libSteve -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn -I/wrkdirs/usr/ports/science/smoldyn/work/.build -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -c /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn/smolwall.c
[ 50% 30/58] /usr/bin/c++ -Dsmoldyn_shared_EXPORTS -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/libSteve -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn -I/wrkdirs/usr/ports/science/smoldyn/work/.build -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -c /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn/libsmoldyn.cpp
[ 51% 31/58] /usr/bin/cc -Dsmoldyn_shared_EXPORTS -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/libSteve -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn -I/wrkdirs/usr/ports/science/smoldyn/work/.build -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -c /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn/smolsurface.c
[ 53% 32/58] /usr/bin/c++ -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/libSteve -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn -I/wrkdirs/usr/ports/science/smoldyn/work/.build -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -MF CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o.d -o CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -c /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn/smoldyn.cpp
[ 55% 33/58] /usr/bin/c++ -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/libSteve -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn -I/wrkdirs/usr/ports/science/smoldyn/work/.build -isystem /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/boost_include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o -MF source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o.d -o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o -c /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/StructuredGrid.cpp
[ 56% 34/58] /usr/bin/c++ -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/libSteve -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn -I/wrkdirs/usr/ports/science/smoldyn/work/.build -isystem /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/boost_include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o -MF source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o.d -o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o -c /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/Species.cpp
[ 58% 35/58] /usr/bin/c++ -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/libSteve -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn -I/wrkdirs/usr/ports/science/smoldyn/work/.build -isystem /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/boost_include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o -MF source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o.d -o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o -c /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/ReactionEquation.cpp
[ 60% 36/58] /usr/bin/c++ -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/libSteve -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn -I/wrkdirs/usr/ports/science/smoldyn/work/.build -isystem /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/boost_include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -MF source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o.d -o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -c /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/NextSubvolumeMethod.cpp
FAILED: source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o
/usr/bin/c++ -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/libSteve -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn -I/wrkdirs/usr/ports/science/smoldyn/work/.build -isystem /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/boost_include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -MF source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o.d -o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -c /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/NextSubvolumeMethod.cpp
In file included from /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/NextSubvolumeMethod.cpp:8:
In file included from /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/NextSubvolumeMethod.h:35:
In file included from /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/boost_include/boost/heap/fibonacci_heap.hpp:21:
/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/boost_include/boost/heap/detail/tree_iterator.hpp:27:17: error: no template named 'unary_function' in namespace 'std'; did you mean '__unary_function'?
public std::unary_function<type,type>
~~~~~^
/usr/include/c++/v1/__functional/unary_function.h:46:1: note: '__unary_function' declared here
using __unary_function = __unary_function_keep_layout_base<_Arg, _Result>;
^
In file included from /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/NextSubvolumeMethod.cpp:8:
In file included from /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/NextSubvolumeMethod.h:35:
In file included from /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/boost_include/boost/heap/fibonacci_heap.hpp:21:
/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/boost_include/boost/heap/detail/tree_iterator.hpp:38:17: error: no template named 'unary_function' in namespace 'std'; did you mean '__unary_function'?
public std::unary_function<type,type>
~~~~~^
/usr/include/c++/v1/__functional/unary_function.h:46:1: note: '__unary_function' declared here
using __unary_function = __unary_function_keep_layout_base<_Arg, _Result>;
^
/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/NextSubvolumeMethod.cpp:162:7: warning: variable 'beta' set but not used [-Wunused-but-set-variable]
int beta = 0;
^
1 warning and 2 errors generated.
[ 62% 36/58] /usr/bin/c++ -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/libSteve -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn -I/wrkdirs/usr/ports/science/smoldyn/work/.build -isystem /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/boost_include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o -MF source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o.d -o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o -c /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/Kairos.cpp
FAILED: source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o
/usr/bin/c++ -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/libSteve -I/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/Smoldyn -I/wrkdirs/usr/ports/science/smoldyn/work/.build -isystem /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/boost_include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o -MF source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o.d -o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o -c /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/Kairos.cpp
In file included from /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/Kairos.cpp:26:
In file included from /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/Kairos.h:29:
In file included from /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/NextSubvolumeMethod.h:35:
In file included from /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/boost_include/boost/heap/fibonacci_heap.hpp:21:
/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/boost_include/boost/heap/detail/tree_iterator.hpp:27:17: error: no template named 'unary_function' in namespace 'std'; did you mean '__unary_function'?
public std::unary_function<type,type>
~~~~~^
/usr/include/c++/v1/__functional/unary_function.h:46:1: note: '__unary_function' declared here
using __unary_function = __unary_function_keep_layout_base<_Arg, _Result>;
^
In file included from /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/Kairos.cpp:26:
In file included from /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/Kairos.h:29:
In file included from /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/NextSubvolumeMethod.h:35:
In file included from /wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/boost_include/boost/heap/fibonacci_heap.hpp:21:
/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.71/source/NextSubVolume/boost_include/boost/heap/detail/tree_iterator.hpp:38:17: error: no template named 'unary_function' in namespace 'std'; did you mean '__unary_function'?
public std::unary_function<type,type>
~~~~~^
/usr/include/c++/v1/__functional/unary_function.h:46:1: note: '__unary_function' declared here
using __unary_function = __unary_function_keep_layout_base<_Arg, _Result>;
^
2 errors generated.
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/smoldyn