[package - main-i386-default][math/sympol] Failed for sympol-0.1.9_8 in build

From: <pkg-fallout_at_FreeBSD.org>
Date: Mon, 26 Jun 2023 08:48:35 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/beefy17/data/main-i386-default/p4785b313b958_se8efee297c/logs/sympol-0.1.9_8.log
Build URL:      https://pkg-status.freebsd.org/beefy17/build.html?mastername=main-i386-default&build=p4785b313b958_se8efee297c
Log:

=>> Building math/sympol
build started at Mon Jun 26 08:48:24 UTC 2023
port directory: /usr/ports/math/sympol
package name: sympol-0.1.9_8
building for: FreeBSD main-i386-default-job-06 14.0-CURRENT FreeBSD 14.0-CURRENT 1400091 i386
maintained by: yuri@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400089
Jail OSVERSION: 1400091
Job Id: 06




!!! Jail is newer than host. (Jail: 1400091, Host: 1400089) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   sympol-0.1.9_8 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.19.1_1.pkg
[main-i386-default-job-06] Installing pkg-1.19.1_1...
[main-i386-default-job-06] Extracting pkg-1.19.1_1: .......... done
===>   sympol-0.1.9_8 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of sympol-0.1.9_8
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by sympol-0.1.9_8 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by sympol-0.1.9_8 for building
=> SHA256 Checksum OK for tremlin-SymPol-v0.1.9_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by sympol-0.1.9_8 for building
===>  Extracting for sympol-0.1.9_8
=> SHA256 Checksum OK for tremlin-SymPol-v0.1.9_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for sympol-0.1.9_8
===>  Applying FreeBSD patches for sympol-0.1.9_8 from /usr/ports/math/sympol/files
===========================================================================
=======================<phase: build-depends  >============================
<snip>
[main-i386-default-job-06] |   | `-- Extracting gmp-6.2.1: .......... done
[main-i386-default-job-06] |   | `-- Installing mpc-1.3.1_1...
[main-i386-default-job-06] |   |   `-- Installing mpfr-4.2.0_1,1...
[main-i386-default-job-06] |   |   `-- Extracting mpfr-4.2.0_1,1: .......... done
[main-i386-default-job-06] |   | `-- Extracting mpc-1.3.1_1: ......... done
[main-i386-default-job-06] |   `-- Extracting gcc12-12.2.0_6: .......... done
[main-i386-default-job-06] `-- Extracting blas-3.11.0_1: ........ done
[main-i386-default-job-06] `-- Installing lapack-3.11.0_1...
[main-i386-default-job-06] `-- Extracting lapack-3.11.0_1: .......... done
[main-i386-default-job-06] Extracting eigen-3.4.0_2: .......... done
=====
Message from gcc12-12.2.0_6:

--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc12

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===>   sympol-0.1.9_8 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found
===>   Returning to build of sympol-0.1.9_8
===========================================================================
=======================<phase: lib-depends    >============================
===>   sympol-0.1.9_8 depends on shared library: libboost_program_options.so - found (/usr/local/lib/libboost_program_options.so)
===>   sympol-0.1.9_8 depends on shared library: libcddgmp.so - not found
===>   Installing existing package /packages/All/cddlib-0.94m.pkg
[main-i386-default-job-06] Installing cddlib-0.94m...
[main-i386-default-job-06] Extracting cddlib-0.94m: .......... done
===>   sympol-0.1.9_8 depends on shared library: libcddgmp.so - found (/usr/local/lib/libcddgmp.so)
===>   Returning to build of sympol-0.1.9_8
===>   sympol-0.1.9_8 depends on shared library: libgmp.so - found (/usr/local/lib/libgmp.so)
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for sympol-0.1.9_8
===>  Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/math/sympol/work/.build
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 2.8.12 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- The C compiler identification is Clang 16.0.6
-- The CXX compiler identification is Clang 16.0.6
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found GMP: /usr/local/include  
-- Building SymPol version 0.1.9
-- Looking for sysconf
-- Looking for sysconf - found
-- Looking for getrusage
-- Looking for getrusage - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of uint
-- Check size of uint - done
-- Check size of ulong
-- Check size of ulong - failed
-- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "3.0") 
-- Found Bliss: /usr/local/lib/libbliss.a  
CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message):
  New Boost version may have incorrect or missing dependencies and imported
  targets
Call Stack (most recent call first):
  /usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES)
  sympol/CMakeLists.txt:38 (find_package)


running /usr/local/bin/cmake -E copy_directory /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/data /wrkdirs/usr/ports/math/sympol/work/.build/data  2>&1
-- Configuring done (1.4s)
-- Generating done (0.0s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_COLOR_MAKEFILE
    CMAKE_CXX_FLAGS_DEBUG
    CMAKE_C_FLAGS_DEBUG
    CMAKE_MODULE_LINKER_FLAGS
    CMAKE_VERBOSE_MAKEFILE
    FETCHCONTENT_FULLY_DISCONNECTED
    THREADS_HAVE_PTHREAD_ARG


-- Build files have been written to: /wrkdirs/usr/ports/math/sympol/work/.build
===========================================================================
=======================<phase: build          >============================
===>  Building for sympol-0.1.9_8
[  3% 2/27] /usr/bin/c++ -DGMP -DGMPRATIONAL -DLRS_QUIET -Dsympol_EXPORTS -I/wrkdirs/usr/ports/math/sympol/work/.build -I/usr/local/include/eigen3 -I/usr/local/include/bliss -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/boost -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/permlib -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/lrslib-042c -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/cddlib-094f -I/wrkdirs/usr/ports/math/sympol/work/.build/sympol -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include  -DNDEBUG -O3 -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -fPIC   -Wall -Woverloaded-virtual -MD -MT sympol/CMakeFiles/sympol.dir/configuration.cpp.o -MF sympol/CMakeFiles/sympol.dir/configuration.cpp.o.d -o sympol/CMakeFi
les/sympol.dir/configuration.cpp.o -c /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.cpp
FAILED: sympol/CMakeFiles/sympol.dir/configuration.cpp.o 
/usr/bin/c++ -DGMP -DGMPRATIONAL -DLRS_QUIET -Dsympol_EXPORTS -I/wrkdirs/usr/ports/math/sympol/work/.build -I/usr/local/include/eigen3 -I/usr/local/include/bliss -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/boost -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/permlib -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/lrslib-042c -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/cddlib-094f -I/wrkdirs/usr/ports/math/sympol/work/.build/sympol -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include  -DNDEBUG -O3 -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -fPIC   -Wall -Woverloaded-virtual -MD -MT sympol/CMakeFiles/sympol.dir/configuration.cpp.o -MF sympol/CMakeFiles/sympol.dir/configuration.cpp.o.d -o sympol/CMakeFiles/sympol.d
ir/configuration.cpp.o -c /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.cpp
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.cpp:23:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.h:27:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/common.h:36:
In file included from /usr/local/include/permlib/transversal/schreier_tree_transversal.h:36:
In file included from /usr/local/include/permlib/transversal/transversal.h:36:
/usr/local/include/permlib/sorter/base_sorter.h:42:35: error: no template named 'binary_function' in namespace 'std'; did you mean '__binary_function'?
class OrderedSorter : public std::binary_function<unsigned long, unsigned long, bool> {
                             ~~~~~^
/usr/include/c++/v1/__functional/binary_function.h:49:1: note: '__binary_function' declared here
using __binary_function = __binary_function_keep_layout_base<_Arg1, _Arg2, _Result>;
^
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.cpp:23:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.h:27:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/common.h:37:
In file included from /usr/local/include/permlib/bsgs.h:50:
/usr/local/include/permlib/predicate/pointwise_stabilizer_predicate.h:42:50: error: no template named 'unary_function' in namespace 'std'; did you mean '__unary_function'?
class PointwiseStabilizerPredicate : public std::unary_function<typename PERM::ptr, bool> {
                                            ~~~~~^
/usr/include/c++/v1/__functional/unary_function.h:46:1: note: '__unary_function' declared here
using __unary_function = __unary_function_keep_layout_base<_Arg, _Result>;
^
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.cpp:23:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.h:27:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/common.h:37:
In file included from /usr/local/include/permlib/bsgs.h:51:
/usr/local/include/permlib/predicate/stabilizes_point_predicate.h:42:46: error: no template named 'unary_function' in namespace 'std'; did you mean '__unary_function'?
class StabilizesPointPredicate : public std::unary_function<unsigned long, bool> {
                                        ~~~~~^
/usr/include/c++/v1/__functional/unary_function.h:46:1: note: '__unary_function' declared here
using __unary_function = __unary_function_keep_layout_base<_Arg, _Result>;
^
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.cpp:23:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/configuration.h:27:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/common.h:37:
/usr/local/include/permlib/bsgs.h:457:47: error: no template named 'binary_function' in namespace 'std'; did you mean '__binary_function'?
class StrongGeneratingSetSorter : public std::binary_function<typename PERM::ptr, typename PERM::ptr, bool> {
                                         ~~~~~^
/usr/include/c++/v1/__functional/binary_function.h:49:1: note: '__binary_function' declared here
using __binary_function = __binary_function_keep_layout_base<_Arg1, _Arg2, _Result>;
^
4 errors generated.
[  7% 2/27] /usr/bin/c++ -DGMP -DGMPRATIONAL -DLRS_QUIET -Dsympol_EXPORTS -I/wrkdirs/usr/ports/math/sympol/work/.build -I/usr/local/include/eigen3 -I/usr/local/include/bliss -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/boost -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/permlib -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/lrslib-042c -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/cddlib-094f -I/wrkdirs/usr/ports/math/sympol/work/.build/sympol -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include  -DNDEBUG -O3 -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -fPIC   -Wall -Woverloaded-virtual -MD -MT sympol/CMakeFiles/sympol.dir/polyhedronio.cpp.o -MF sympol/CMakeFiles/sympol.dir/polyhedronio.cpp.o.d -o sympol/CMakeFile
s/sympol.dir/polyhedronio.cpp.o -c /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedronio.cpp
FAILED: sympol/CMakeFiles/sympol.dir/polyhedronio.cpp.o 
/usr/bin/c++ -DGMP -DGMPRATIONAL -DLRS_QUIET -Dsympol_EXPORTS -I/wrkdirs/usr/ports/math/sympol/work/.build -I/usr/local/include/eigen3 -I/usr/local/include/bliss -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/boost -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/permlib -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/lrslib-042c -I/wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/../external/cddlib-094f -I/wrkdirs/usr/ports/math/sympol/work/.build/sympol -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include  -DNDEBUG -O3 -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -fPIC   -Wall -Woverloaded-virtual -MD -MT sympol/CMakeFiles/sympol.dir/polyhedronio.cpp.o -MF sympol/CMakeFiles/sympol.dir/polyhedronio.cpp.o.d -o sympol/CMakeFiles/sympol.dir
/polyhedronio.cpp.o -c /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedronio.cpp
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedronio.cpp:24:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedron.h:27:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/common.h:36:
In file included from /usr/local/include/permlib/transversal/schreier_tree_transversal.h:36:
In file included from /usr/local/include/permlib/transversal/transversal.h:36:
/usr/local/include/permlib/sorter/base_sorter.h:42:35: error: no template named 'binary_function' in namespace 'std'; did you mean '__binary_function'?
class OrderedSorter : public std::binary_function<unsigned long, unsigned long, bool> {
                             ~~~~~^
/usr/include/c++/v1/__functional/binary_function.h:49:1: note: '__binary_function' declared here
using __binary_function = __binary_function_keep_layout_base<_Arg1, _Arg2, _Result>;
^
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedronio.cpp:24:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedron.h:27:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/common.h:37:
In file included from /usr/local/include/permlib/bsgs.h:50:
/usr/local/include/permlib/predicate/pointwise_stabilizer_predicate.h:42:50: error: no template named 'unary_function' in namespace 'std'; did you mean '__unary_function'?
class PointwiseStabilizerPredicate : public std::unary_function<typename PERM::ptr, bool> {
                                            ~~~~~^
/usr/include/c++/v1/__functional/unary_function.h:46:1: note: '__unary_function' declared here
using __unary_function = __unary_function_keep_layout_base<_Arg, _Result>;
^
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedronio.cpp:24:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedron.h:27:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/common.h:37:
In file included from /usr/local/include/permlib/bsgs.h:51:
/usr/local/include/permlib/predicate/stabilizes_point_predicate.h:42:46: error: no template named 'unary_function' in namespace 'std'; did you mean '__unary_function'?
class StabilizesPointPredicate : public std::unary_function<unsigned long, bool> {
                                        ~~~~~^
/usr/include/c++/v1/__functional/unary_function.h:46:1: note: '__unary_function' declared here
using __unary_function = __unary_function_keep_layout_base<_Arg, _Result>;
^
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedronio.cpp:24:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/polyhedron.h:27:
In file included from /wrkdirs/usr/ports/math/sympol/work/SymPol-0.1.9/sympol/common.h:37:
/usr/local/include/permlib/bsgs.h:457:47: error: no template named 'binary_function' in namespace 'std'; did you mean '__binary_function'?
class StrongGeneratingSetSorter : public std::binary_function<typename PERM::ptr, typename PERM::ptr, bool> {
                                         ~~~~~^
/usr/include/c++/v1/__functional/binary_function.h:49:1: note: '__binary_function' declared here
using __binary_function = __binary_function_keep_layout_base<_Arg1, _Arg2, _Result>;
^
4 errors generated.
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1

Stop.
make: stopped in /usr/ports/math/sympol