From nobody Sun Jun 25 04:46:00 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Qpdhn1xfGz4hGgf for ; Sun, 25 Jun 2023 04:46:01 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Qpdhm4kJbz46fN for ; Sun, 25 Jun 2023 04:46:00 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1687668360; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=5/lLf4NFW3kJgaK+906VSkq4ATTuHYsFJodlWaxjJLM=; b=FSsgtaxl/MNAwJvXpOHiQFDL9wJN96kGbQchD1CdLJSH7Kugsf10/Iu0Us3eKHcIEdFE/R oL7KUW+SHpQfAsxgFOAtHhBKPwkgJW+fGfF4+rwI17kdtU1AvmnuoBOawqZ3DCrNJdXhrl +IifldGE4TxagMywl4sEF51c0NhcPYno6pDUEeTaPUoAPI1AwSH+BkOsZH/v3oEsVh9Kkv G6RKhqLO9r3NdZWc+PbL6nPlaeeTAfod53AVyNLni+JdHqXxtFK0MNdVTxfoz6zYEYUwvf ShLEn0VmAX612ZvhLxUxUeyt2GTSlxJ90e+0O4M38v/zyiw2gsLJjiDv5OGs7Q== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1687668360; a=rsa-sha256; cv=none; b=GgNf0u10EoWskDWnqg4jNd3JVHwLK0xppMkZEXAGrBgilj9AMFRqVBY/k2nV9k69Ym8Cnk n52Y1eQXDovdTT9J2N05V7tOn+gmOdwdDguZvHIvEZy7igMCabjTo7XY2FdvcE4acyHlSc qCbPhfUpWO/EMzSxc48vD14X++DSK+XLJ5nrZGF6mOGQG7q2ipD1tqAvpwuVs+Klqa66U2 lp7HP2l9T9JVV0xLO0Nx2Sl68IscMzldyqQ83HWx1YJmJFfACIC82dTRyXht23+ria3Xjk 63KyNozSI4BeLEn39bB9/cPx3dF4gtsHrZOcOfjc1BeV5XPv7150Wh+mCut1tw== Received: from beefy8.nyi.freebsd.org (beefy8.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:17]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4Qpdhm3pn3zF3B for ; Sun, 25 Jun 2023 04:46:00 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 67b4 by beefy8.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy8.nyi.freebsd.org); Sun, 25 Jun 2023 04:46:00 +0000 To: pkg-fallout@FreeBSD.org Subject: [package - main-armv6-default][biology/clustalw] Failed for clustalw-2.1_2 in build Date: Sun, 25 Jun 2023 04:46:00 +0000 Message-Id: <6497c688.67b4.6eff5cc2@beefy8.nyi.freebsd.org> From: X-ThisMailContainsUnwantedMimeParts: N List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy8/data/main-armv6-default/p1628143cd83e_s229d643c4d/logs/clustalw-2.1_2.log Build URL: https://pkg-status.freebsd.org/beefy8/build.html?mastername=main-armv6-default&build=p1628143cd83e_s229d643c4d Log: =>> Building biology/clustalw build started at Sun Jun 25 04:45:37 UTC 2023 port directory: /usr/ports/biology/clustalw package name: clustalw-2.1_2 building for: FreeBSD main-armv6-default-job-09 14.0-CURRENT FreeBSD 14.0-CURRENT 1400092 arm maintained by: jwb@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400088 Jail OSVERSION: 1400092 Job Id: 09 !!! Jail is newer than host. (Jail: 1400092, Host: 1400088) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1400092 UNAME_v=FreeBSD 14.0-CURRENT 1400092 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/main-armv6-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-armv6-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-armv6-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/clustalw/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/clustalw/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/clustalw/work/.cache HOME=/wrkdirs/usr/ports/biology/clustalw/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/clustalw/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/clustalw/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/clustalw/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/clustalw/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/clustalw/work/.cache HOME=/wrkdirs/usr/ports/biology/clustalw/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/clustalw/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/clustalw/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0 644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/clustalw" EXAMPLESDIR="share/examples/clustalw" DATADIR="share/clustalw" WWWDIR="www/clustalw" ETCDIR="etc/clustalw" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/clustalw DOCSDIR=/usr/local/share/doc/clustalw EXAMPLESDIR=/usr/local/share/examples/clustalw WWWDIR=/usr/local/www/clustalw ETCDIR=/usr/local/etc/clustalw --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: armv6-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: armv6-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_53255a77=yes CC_OUTPUT_9d218390_911cfe02=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes CC_OUTPUT_9d218390_af59ad06=yes CC_OUTPUT_9d218390_a15f3fcf=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: armv6-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv6 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400092 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License LGPL3 accepted by the user =========================================================================== =================================================== ===> clustalw-2.1_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.19.1_1.pkg [main-armv6-default-job-09] Installing pkg-1.19.1_1... [main-armv6-default-job-09] Extracting pkg-1.19.1_1: .......... done ===> clustalw-2.1_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of clustalw-2.1_2 =========================================================================== =================================================== =========================================================================== =================================================== ===> License LGPL3 accepted by the user ===> Fetching all distfiles required by clustalw-2.1_2 for building =========================================================================== =================================================== ===> License LGPL3 accepted by the user ===> Fetching all distfiles required by clustalw-2.1_2 for building => SHA256 Checksum OK for clustalw-2.1.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License LGPL3 accepted by the user ===> Fetching all distfiles required by clustalw-2.1_2 for building ===> Extracting for clustalw-2.1_2 => SHA256 Checksum OK for clustalw-2.1.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for clustalw-2.1_2 ===> Applying FreeBSD patches for clustalw-2.1_2 from /usr/ports/biology/clustalw/files =========================================================================== =================================================== =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for clustalw-2.1_2 configure: loading site script /usr/ports/Templates/config.site checking build system type... armv6-portbld-freebsd14.0 checking host system type... armv6-portbld-freebsd14.0 checking target system type... armv6-portbld-freebsd14.0 building for freebsd14.0 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make sets $(MAKE)... (cached) yes checking for gcc... /nxb-bin/usr/bin/cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /nxb-bin/usr/bin/cc accepts -g... yes checking for /nxb-bin/usr/bin/cc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of /nxb-bin/usr/bin/cc... gcc3 checking whether we are using the GNU C++ compiler... yes checking whether /nxb-bin/usr/bin/c++ accepts -g... yes checking dependency style of /nxb-bin/usr/bin/c++... gcc3 checking for ranlib... ranlib checking how to run the C++ preprocessor... /nxb-bin/usr/bin/c++ -E checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for stdbool.h that conforms to C99... (cached) yes checking for _Bool... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes configure: creating ./config.status config.status: creating Makefile config.status: creating m4/Makefile config.status: creating src/Makefile config.status: creating src/clustalw_version.h config.status: creating src/config.h config.status: executing depfiles commands =========================================================================== =================================================== ===> Building for clustalw-2.1_2 Making all in m4 Making all in src /nxb-bin/usr/bin/make all-recursive /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT FullPairwiseAlign.o -MD -MP -MF .deps/FullPairwiseAlign.Tpo -c -o FullPairwiseAlign.o `test -f './pairwise/FullPairwiseAlign.cpp' || echo './'`./pairwise/FullPairwiseAlign.cpp In file included from ./pairwise/FullPairwiseAlign.cpp:9: In file included from ./pairwise/FullPairwiseAlign.h:9: In file included from ./pairwise/PairwiseAlignBase.h:10: In file included from ./pairwise/../alignment/Alignment.h:42: In file included from ./pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8: ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ 2 warnings generated. mv -f .deps/FullPairwiseAlign.Tpo .deps/FullPairwiseAlign.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT FastPairwiseAlign.o -MD -MP -MF .deps/FastPairwiseAlign.Tpo -c -o FastPairwiseAlign.o `test -f './pairwise/FastPairwiseAlign.cpp' || echo './'`./pairwise/FastPairwiseAlign.cpp In file included from ./pairwise/FastPairwiseAlign.cpp:10: In file included from ./pairwise/FastPairwiseAlign.h:9: In file included from ./pairwise/PairwiseAlignBase.h:10: In file included from ./pairwise/../alignment/Alignment.h:42: In file included from ./pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8: ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ 2 warnings generated. mv -f .deps/FastPairwiseAlign.Tpo .deps/FastPairwiseAlign.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT MSFFileParser.o -MD -MP -MF .deps/MSFFileParser.Tpo -c -o MSFFileParser.o `test -f './fileInput/MSFFileParser.cpp' || echo './'`./fileInput/MSFFileParser.cpp mv -f .deps/MSFFileParser.Tpo .deps/MSFFileParser.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT FileReader.o -MD -MP -MF .deps/FileReader.Tpo -c -o FileReader.o `test -f './fileInput/FileReader.cpp' || echo './'`./fileInput/FileReader.cpp In file included from ./fileInput/FileReader.cpp:29: In file included from ./fileInput/FileReader.h:12: In file included from ./fileInput/../alignment/Alignment.h:42: In file included from ./fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8: ./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ In file included from ./fileInput/FileReader.cpp:29: ./fileInput/FileReader.h:42:38: error: no template named 'auto_ptr' void checkInfile(int* nseqs, auto_ptr& fileParser); ^ ./fileInput/FileReader.cpp:155:5: error: no template named 'auto_ptr' auto_ptr fileParser; // Means we dont need to delete it! ^ ./fileInput/FileReader.cpp:426:42: error: no template named 'auto_ptr' void FileReader::checkInfile(int *nseqs, auto_ptr& fileParser) ^ 2 warnings and 3 errors generated. *** Error code 1 Stop. make[4]: stopped in /wrkdirs/usr/ports/biology/clustalw/work/clustalw-2.1/src *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/biology/clustalw/work/clustalw-2.1/src *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/clustalw/work/clustalw-2.1/src *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/clustalw/work/clustalw-2.1 *** Error code 1 Stop. make: stopped in /usr/ports/biology/clustalw