[package - 131arm64-default][math/py-mnnpy] Failed for py39-mnnpy-0.1.9.5 in build
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Date: Tue, 20 Jun 2023 18:05:29 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere3/data/131arm64-default/cc0f1969e598/logs/py39-mnnpy-0.1.9.5.log Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=131arm64-default&build=cc0f1969e598 Log: =>> Building math/py-mnnpy build started at Tue Jun 20 18:04:39 UTC 2023 port directory: /usr/ports/math/py-mnnpy package name: py39-mnnpy-0.1.9.5 building for: FreeBSD 131arm64-default-job-02 13.1-RELEASE-p7 FreeBSD 13.1-RELEASE-p7 arm64 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400089 Jail OSVERSION: 1301000 Job Id: 02 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1301000 UNAME_v=FreeBSD 13.1-RELEASE-p7 UNAME_r=13.1-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/131arm64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/131arm64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=131arm64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/131arm64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-mnnpy/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-mnnpy/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/math/py-mnnpy/work-py39/.cache HOME=/wrkdirs/usr/ports/math/py-mnnpy/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-mnnpy/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/py-mnnpy/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-mnnpy/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-mnnpy/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/math/py-mnnpy/work-py39/.cache HOME=/wrkdirs/usr/ports/math/py-mnnpy/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-mnnpy/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/py-mnnpy/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTA LL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=13.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/mnnpy" EXAMPLESDIR="share/examples/mnnpy" DATADIR="share/mnnpy" WWWDIR="www/mnnpy" ETCDIR="etc/mnnpy" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/mnnpy DOCSDIR=/usr/local/share/doc/mnnpy EXAMPLESDIR=/usr/local/share/examples/mnnpy WWWDIR=/usr/local/www/mnnpy ETCDIR=/usr/local/etc/mnnpy --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: aarch64-unknown-freebsd13.1 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: aarch64-unknown-freebsd13.1 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: aarch64-unknown-freebsd13.1 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=aarch64 OPSYS=FreeBSD _OSRELEASE=13.1-RELEASE-p7 OSREL=13.1 OSVERSION=1301000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> py39-mnnpy-0.1.9.5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.19.1_1.pkg [131arm64-default-job-02] Installing pkg-1.19.1_1... [131arm64-default-job-02] Extracting pkg-1.19.1_1: .......... done ===> py39-mnnpy-0.1.9.5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-mnnpy-0.1.9.5 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-mnnpy-0.1.9.5 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-mnnpy-0.1.9.5 for building => SHA256 Checksum OK for mnnpy-0.1.9.5.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-mnnpy-0.1.9.5 for building ===> Extracting for py39-mnnpy-0.1.9.5 => SHA256 Checksum OK for mnnpy-0.1.9.5.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for py39-mnnpy-0.1.9.5 =========================================================================== =======================<phase: build-depends >============================ ===> py39-mnnpy-0.1.9.5 depends on package: py39-anndata>0 - not found ===> Installing existing package /packages/All/py39-anndata-0.9.1_2.pkg [131arm64-default-job-02] Installing py39-anndata-0.9.1_2... 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[131arm64-default-job-02] | `-- Extracting blas-3.11.0_1: ........ done [131arm64-default-job-02] `-- Extracting py39-scipy-1.10.1_1: .......... done [131arm64-default-job-02] Extracting py39-anndata-0.9.1_2: .......... done ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===== Message from metis-5.1.0_9: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===== Message from py39-pandas-2.0.2,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. ===> py39-mnnpy-0.1.9.5 depends on package: py39-anndata>0 - found ===> Returning to build of py39-mnnpy-0.1.9.5 ===> py39-mnnpy-0.1.9.5 depends on package: py39-numba>0 - not found ===> Installing existing package /packages/All/py39-numba-0.56.2_4.pkg [131arm64-default-job-02] Installing py39-numba-0.56.2_4... [131arm64-default-job-02] `-- Installing onetbb-2021.9.0... [131arm64-default-job-02] | `-- Installing hwloc2-2.8.0... [131arm64-default-job-02] | | `-- Installing level-zero-1.12.0... 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[131arm64-default-job-02] | | `-- Extracting perl5-5.32.1_3: .......... done [131arm64-default-job-02] | `-- Extracting llvm11-11.0.1_7: .......... done [131arm64-default-job-02] `-- Extracting py39-llvmlite-0.39.1_1: .......... done [131arm64-default-job-02] Extracting py39-numba-0.56.2_4: .......... done ===== Message from level-zero-1.12.0: -- ===> NOTICE: The level-zero port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> py39-mnnpy-0.1.9.5 depends on package: py39-numba>0 - found ===> Returning to build of py39-mnnpy-0.1.9.5 ===> py39-mnnpy-0.1.9.5 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-mnnpy-0.1.9.5 depends on package: py39-pandas>0 - found ===> py39-mnnpy-0.1.9.5 depends on package: py39-scipy>0 - found ===> py39-mnnpy-0.1.9.5 depends on executable: cython-3.9 - found ===> py39-mnnpy-0.1.9.5 depends on package: py39-setuptools>=63.1.0 - found ===> py39-mnnpy-0.1.9.5 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for py39-mnnpy-0.1.9.5 /usr/local/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /wrkdirs/usr/ports/math/py-mnnpy/work-py39/mnnpy-0.1.9.5/mnnpy/_utils.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling mnnpy/_utils.pyx because it depends on /usr/local/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. [1/1] Cythonizing mnnpy/_utils.pyx /usr/local/lib/python3.9/site-packages/setuptools/config/setupcfg.py:463: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. warnings.warn(msg, warning_class) running config =========================================================================== =======================<phase: build >============================ ===> Building for py39-mnnpy-0.1.9.5 /usr/local/lib/python3.9/site-packages/setuptools/config/setupcfg.py:463: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. warnings.warn(msg, warning_class) running build running build_py file irlb.py (for module irlb) not found file mnn.py (for module mnn) not found file utils.py (for module utils) not found creating build creating build/lib.freebsd-13.1-RELEASE-p7-arm64-cpython-39 creating build/lib.freebsd-13.1-RELEASE-p7-arm64-cpython-39/mnnpy copying mnnpy/irlb.py -> build/lib.freebsd-13.1-RELEASE-p7-arm64-cpython-39/mnnpy copying mnnpy/__init__.py -> build/lib.freebsd-13.1-RELEASE-p7-arm64-cpython-39/mnnpy copying mnnpy/mnn.py -> build/lib.freebsd-13.1-RELEASE-p7-arm64-cpython-39/mnnpy copying mnnpy/settings.py -> build/lib.freebsd-13.1-RELEASE-p7-arm64-cpython-39/mnnpy copying mnnpy/utils.py -> build/lib.freebsd-13.1-RELEASE-p7-arm64-cpython-39/mnnpy file irlb.py (for module irlb) not found file mnn.py (for module mnn) not found file utils.py (for module utils) not found running build_ext building 'mnnpy._utils' extension creating build/temp.freebsd-13.1-RELEASE-p7-arm64-cpython-39 creating build/temp.freebsd-13.1-RELEASE-p7-arm64-cpython-39/mnnpy cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -Imnnpy -I/usr/local/include/python3.9 -c mnnpy/_utils.c -o build/temp.freebsd-13.1-RELEASE-p7-arm64-cpython-39/mnnpy/_utils.o -O2 -ffast-math -march=native -fopenmp cc: error: the clang compiler does not support '-march=native' error: command '/usr/bin/cc' failed with exit code 1 *** Error code 1 Stop. make: stopped in /usr/ports/math/py-mnnpy